Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03467 and RBAM_021440

See Amino acid alignment / Visit BSNT_03467 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:42
# Commandline: needle
#    -asequence dna-align/BSNT_03467___sipS.1.9828.seq
#    -bsequence dna-align/RBAM_021440___sipS.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03467___sipS-RBAM_021440___sipS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03467___sipS-RBAM_021440___sipS.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03467___sipS
# 2: RBAM_021440___sipS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 576
# Identity:     425/576 (73.8%)
# Similarity:   425/576 (73.8%)
# Gaps:          39/576 ( 6.8%)
# Score: 1582.0
# 
#
#=======================================

BSNT_03467___      1 TTGAAATCAGAAAATGTTTCGAAGAAAAAA----TCAA----------TA     36
                     |||||||||||||        |||||||||    |.||          ||
RBAM_021440__      1 TTGAAATCAGAAA--------AAGAAAAAACTTCTAAAAAAAGCGCCGTA     42

BSNT_03467___     37 TTAGAATGGGTTAAAGCAATTGTGATTGCTGTCGTTCTTGCTTTGCTCAT     86
                     .|.||.||||..|||||.|||.|.||.|||||||||||.||..|||||||
RBAM_021440__     43 CTTGATTGGGCGAAAGCCATTATCATCGCTGTCGTTCTGGCACTGCTCAT     92

BSNT_03467___     87 CCGCAACTTTATTTTTGCGCCGTATGTCGTTGACGGTGAATCCATGGAAC    136
                     |||.||||||.|.|||||.||.|||.|||||||.||...|||.|||||.|
RBAM_021440__     93 CCGAAACTTTTTATTTGCCCCTTATCTCGTTGATGGAAGATCAATGGATC    142

BSNT_03467___    137 CTACACTTCACGATCGTGAAAGGGTCTTTGTCAATATGACAGTCAAATAC    186
                     |.||.||.||.||.||.||.||..||||||||||||||||.|||||||||
RBAM_021440__    143 CGACGCTGCATGACCGCGAGAGAATCTTTGTCAATATGACGGTCAAATAC    192

BSNT_03467___    187 ATCGGCGAGTTTGATAGAGGAGACATTGTCGTGTTAAACGGAGATGATGT    236
                     ||..||||.||..|..|.||..|.||.|||||..|.||||||||..|.|.
RBAM_021440__    193 ATAAGCGACTTCAAACGCGGCCAGATCGTCGTTCTGAACGGAGAAAACGA    242

BSNT_03467___    237 TCACTATGTCAAACGTATTATCGGCCTTCCCGGCGATACGGTTGAGATGA    286
                     .|||||||||||.||.||||||||.|||||||||||.|||||..|.||||
RBAM_021440__    243 GCACTATGTCAAGCGGATTATCGGACTTCCCGGCGACACGGTACAAATGA    292

BSNT_03467___    287 AAAATGACCAGCTCTATATCAACGGGAAAAAGGTGGACGAACCTTATTTG    336
                     ||||.||||||||.||.||||||||.|||||.|||..||||||.|||||.
RBAM_021440__    293 AAAACGACCAGCTGTACATCAACGGCAAAAAAGTGTCCGAACCGTATTTA    342

BSNT_03467___    337 GCGGCTAATAAAAAGAGAGCGAAACAGGACGGTAAACCTTTGACC-----    381
                     |||||.|||||..|.|..|||||.||.|||||     ||.|||||     
RBAM_021440__    343 GCGGCAAATAAGCACAAGGCGAAGCAAGACGG-----CTATGACCGGCTG    387

BSNT_03467___    382 ---GATGATTTCGGCCCGGTTAAAGTGCCTGATAACAAGTATTTTGTGAT    428
                        ||.||.|||||||||||.||.|||||.||..||||.|||||.||.||
RBAM_021440__    388 ACAGAAGACTTCGGCCCGGTGAAGGTGCCGGACGACAAATATTTCGTCAT    437

BSNT_03467___    429 GGGTGACAATCGTCGGA-ATTCCATGGACAGCCGTAACGGACTTGGCCTC    477
                     ||||||.||.|| |.|| |.||.|||||||||||.|||||.||.||.||.
RBAM_021440__    438 GGGTGATAACCG-CAGAGAATCTATGGACAGCCGCAACGGCCTCGGTCTT    486

BSNT_03467___    478 TTCACGAAAAAACAAATTGCGGGTACGTCAAAGTTTGTTTTCTACCCGTT    527
                     ||.||||||||||||||.|||||.||.|||||.||.||.||||.||||||
RBAM_021440__    487 TTTACGAAAAAACAAATAGCGGGCACATCAAAATTCGTCTTCTTCCCGTT    536

BSNT_03467___    528 TAACGAAATGCGCAAAAC-AAATTAG    552
                     |||.|||||.|||||.|| ||||.| 
RBAM_021440__    537 TAATGAAATTCGCAAGACGAAATAA-    561


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