Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03466 and RBAM_021430

See Amino acid alignment / Visit BSNT_03466 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:42
# Commandline: needle
#    -asequence dna-align/BSNT_03466___ypuD.1.9828.seq
#    -bsequence dna-align/RBAM_021430___ypuD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03466___ypuD-RBAM_021430___ypuD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03466___ypuD-RBAM_021430___ypuD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03466___ypuD
# 2: RBAM_021430___ypuD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 348
# Identity:     263/348 (75.6%)
# Similarity:   263/348 (75.6%)
# Gaps:           6/348 ( 1.7%)
# Score: 958.0
# 
#
#=======================================

BSNT_03466___      1 ATGGGAAGAATAAAAACCAAGATTA-CCATTCTGTTAGTGCTTTTGCTTT     49
                     |||||||||||.|||| |||.|..| |||||.|..|.||.||..||||.|
RBAM_021430__      1 ATGGGAAGAATTAAAA-CAAAAGCAGCCATTTTACTTGTACTACTGCTGT     49

BSNT_03466___     50 TACTTGCAGGCGGTTATATGTACATAAATGATGTTGAGCTGAAGGATGTT     99
                     ||.|.||.||||||||||||..||||||.|||.||||.|||||.||.||.
RBAM_021430__     50 TATTAGCGGGCGGTTATATGGTCATAAACGATATTGAACTGAAAGACGTG     99

BSNT_03466___    100 CCGACAGCAATTGGACAAACCTTGTCCTCGGAAGAAGAGGAATACACCAT    149
                     |||||.|||||.|||||||||.|||||..||||.||||.|||||.||..|
RBAM_021430__    100 CCGACTGCAATCGGACAAACCCTGTCCCAGGAAAAAGAAGAATATACAGT    149

BSNT_03466___    150 CCAGGAATATAAAGTGACGAAAATTGACGGCTCAGAGTATCATGGAGTA-    198
                     |.|...|||||||.|.||||||||.||.||..|.|||||.||.|  ||| 
RBAM_021430__    150 CAAAACATATAAAATTACGAAAATCGAAGGAACTGAGTACCACG--GTAC    197

BSNT_03466___    199 -GCAGAAAACGGAACGAAAATCATCTTTAACGGAAAAAAATTAAATCAGG    247
                      |||||||||||.||.|||||.||.||||||||..|.||..|.||.||||
RBAM_021430__    198 GGCAGAAAACGGCACAAAAATTATTTTTAACGGCGACAAGCTGAAGCAGG    247

BSNT_03466___    248 ATTTATCTGATATAAAAGAAGGTGACAAGATTAAGGCATACTTCAGCAAA    297
                     ||.|.||.|||.|.|||.|.||.||.||||||||.||.||.|||||||||
RBAM_021430__    248 ATCTCTCCGATGTGAAAAAGGGAGATAAGATTAAAGCGTATTTCAGCAAA    297

BSNT_03466___    298 TCAAAGCGGATCGACGGATTAATCAAGGTTGCAAAAGTGAATGATTAA    345
                     |||||.|||||.|||||.|||.|.|||||.|..||||||||.||.|||
RBAM_021430__    298 TCAAACCGGATTGACGGCTTATTGAAGGTCGTCAAAGTGAACGAATAA    345


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