Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03464 and RBAM_021420
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:42
# Commandline: needle
# -asequence dna-align/BSNT_03464___ribD.1.9828.seq
# -bsequence dna-align/RBAM_021420___ribD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03464___ribD-RBAM_021420___ribD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03464___ribD-RBAM_021420___ribD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03464___ribD
# 2: RBAM_021420___ribD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1135
# Identity: 843/1135 (74.3%)
# Similarity: 843/1135 (74.3%)
# Gaps: 68/1135 ( 6.0%)
# Score: 3106.5
#
#
#=======================================
BSNT_03464___ 1 ATGGAAGAGTATTATATGAAGCTGGCCTTAGATCTTGC--GAAGCAGGGC 48
||||||||.|||||||||||...|||..||||.||||| ||.|| ||.
RBAM_021420__ 1 ATGGAAGAATATTATATGAATACGGCAATAGAACTTGCCAGACGC--GGT 48
BSNT_03464___ 49 GAAGGACAGACCGAATCCAATCCGCTCGTCGGCGCTGTTGTCGTAAAGGA 98
|||||||||||..|.||||||||.||.|||||||||||.|||||.||..|
RBAM_021420__ 49 GAAGGACAGACACAGTCCAATCCTCTTGTCGGCGCTGTCGTCGTCAAAAA 98
BSNT_03464___ 99 CGGACAAATTGTCGGAATGGGCGCCCATTTAAAATATGGTGAAGCTCATG 148
||||||.||.||||||||||||||||||||..||||.||.|||||.||||
RBAM_021420__ 99 CGGACAGATCGTCGGAATGGGCGCCCATTTGCAATACGGAGAAGCGCATG 148
BSNT_03464___ 149 CAGAAGTTCATGCCATCCATATGGCTGG-AGCACATGCAGAGGGTGCCGA 197
|.||.|||||.||.||.||||||||.|| || |||.|||.|.||.|||||
RBAM_021420__ 149 CCGAGGTTCACGCGATTCATATGGCCGGCAG-ACACGCAAAAGGCGCCGA 197
BSNT_03464___ 198 CATTTACGTTACACTCGAACCGTGCAGCCATTACGGAAAAACACCGCCAT 247
..|.||.||.||.||.||.||.||||||||||||||||||||||||||||
RBAM_021420__ 198 TTTGTATGTGACGCTGGAGCCTTGCAGCCATTACGGAAAAACACCGCCAT 247
BSNT_03464___ 248 GTGCAGAATTGATTATCAACTCTGGCATCAAAAGAGTGTTCGTGGCGATG 297
|.||.|||.||||.||.||.||.||.||.|||||.|||||..|.||..||
RBAM_021420__ 248 GCGCCGAACTGATAATAAAGTCGGGGATAAAAAGGGTGTTTATCGCTGTG 297
BSNT_03464___ 298 AGAGATCCTAATCCGCTTGTGGCTGGAAGAGGGATCAGCATGATCAAAGA 347
|.||||||.|||||||||||.||.||||.|||.|||.|.|||.|..|||.
RBAM_021420__ 298 AAAGATCCGAATCCGCTTGTAGCCGGAAAAGGCATCGGAATGCTGGAAGC 347
BSNT_03464___ 348 AGCCGGCATTGAGGTAAGGGAA-----GGCATC-CTGGCAGACCAGGC-G 390
|||.|||||.| |||.||| |.|.|| |.||||| ||||| |
RBAM_021420__ 348 AGCGGGCATCG----AAGTGAAAACCGGACTTCTCAGGCAG--CAGGCAG 391
BSNT_03464___ 391 GAGAGCCTGAATGAAAAATTTCTGCACTTTATGAGGACAGGCCTTCCGTA 440
.|||| ||||||.|||..|||||.|||||.|||.||||.||.||||||||
RBAM_021420__ 392 AAGAG-CTGAATAAAATGTTTCTTCACTTCATGCGGACCGGACTTCCGTA 440
BSNT_03464___ 441 CGTCACGCTAAAAGCGGCTGCCAGCCTTGACGGCAAGATAGCTACCAGCA 490
.|||||..|.||||||||.||.|||||||||||.||.|.|||.||....|
RBAM_021420__ 441 TGTCACCTTGAAAGCGGCCGCGAGCCTTGACGGGAAAACAGCGACTGAAA 490
BSNT_03464___ 491 CGGGTGACAGCAAATGGATCACGTCAGAGGCTGCAAGACAGGATGCTCAG 540
|.|||||||||||||||||.||.||||||||.|||||.|..|||||.|||
RBAM_021420__ 491 CCGGTGACAGCAAATGGATTACATCAGAGGCAGCAAGGCTTGATGCCCAG 540
BSNT_03464___ 541 CAATACAGGAAAACACACCAAAGCATTTTAGTCGGAGTTGGCACAGTGAA 590
||||||||||||.|.||.|||||||||.|.|||||||..||||||||.||
RBAM_021420__ 541 CAATACAGGAAATCGCATCAAAGCATTCTTGTCGGAGCAGGCACAGTCAA 590
BSNT_03464___ 591 AGCCGACAATCCGAGCTTAACCTGCAGACTGCCGAATGTAACAAAACAGC 640
||||||.|||||||||.|.||||||||.||.||..|||.....||.||||
RBAM_021420__ 591 AGCCGATAATCCGAGCCTGACCTGCAGGCTTCCTGATGCGGTGAAGCAGC 640
BSNT_03464___ 641 CGGTTCGGGTCATACTTGATACCGTACTCTCGATTCCTGAGGACGCTAAA 690
||||..|.||.||.||.|||||....||..|.|||||||| .|||..|||
RBAM_021420__ 641 CGGTCAGAGTGATTCTCGATACAAAGCTGACCATTCCTGA-AACGGCAAA 689
BSNT_03464___ 691 GTGATTTGCGATCAAATA-------GCGCCGACATGGATTTTTACGACGG 733
||.|.|||...| ||||||||||||||.||||||.|..
RBAM_021420__ 690 ------TGTGCTCACTGACGGCGCTGCGCCGACATGGATATTTACGGCCA 733
BSNT_03464___ 734 CACGCGCAGACGAGGAAAAGAAAAAACGGCTTTCAGCTTTCGGAGTGAAC 783
.|.|.|||||||.|.||||||||.|.|||||..|.||..|||||.|.||.
RBAM_021420__ 734 AAGGTGCAGACGTGCAAAAGAAAGACCGGCTGACCGCACTCGGAATAAAA 783
BSNT_03464___ 784 ATATTTACACTTGAAACCGAGCGCATTCAAATTCCCGATGTTTTGAAGAT 833
.|..||.|.||.|||||.||.||||||||..|.||.||.||..|.|..||
RBAM_021420__ 784 GTTATTCCGCTGGAAACAGACCGCATTCACGTCCCTGAGGTGCTCAGTAT 833
BSNT_03464___ 834 CCTAGCGGAAGAAGGTATCATGTCGGTGTATGTGGAAGGCGGTTCAGCTG 883
.||.||.|||.|.||.||.|||||.||.|||||||||||.||..||.|.|
RBAM_021420__ 834 TCTCGCTGAAAACGGCATAATGTCCGTTTATGTGGAAGGAGGAGCATCCG 883
BSNT_03464___ 884 TTCACGGAAGCTTTGTCAAAGAAGGCTGTTTTCAAGA-AATCATCTTCTA 932
|.||||||||.||||||||.||||.||||||.||||| ..|||| |||||
RBAM_021420__ 884 TACACGGAAGTTTTGTCAAGGAAGACTGTTTCCAAGAGCTTCAT-TTCTA 932
BSNT_03464___ 933 TTTTGCCCCTAAACTAATCGGAGGAACGCATGCTCCCAGCTTAATCTCCG 982
|||.|||||||||.|||||||||||||||.||||||||||||.|||||||
RBAM_021420__ 933 TTTCGCCCCTAAATTAATCGGAGGAACGCTTGCTCCCAGCTTGATCTCCG 982
BSNT_03464___ 983 GTGAAGGTTTTCAATCAATGAAAGATGTCCCCTTATTACAATTCACTGAT 1032
||||||||||||||||||||||||||||||||...|||||||||||..|.
RBAM_021420__ 983 GTGAAGGTTTTCAATCAATGAAAGATGTCCCCCATTTACAATTCACACAA 1032
BSNT_03464___ 1033 ATAACCCAAATC-GGCCGTGATATCAAACTGACGGCAAAACC-------- 1073
||.||||||||| ||||| |||||.|||||||||||.|.|||
RBAM_021420__ 1033 ATCACCCAAATCGGGCCG-GATATAAAACTGACGGCCATACCTAAAGATG 1081
BSNT_03464___ 1074 -----------GAC-------AAAGGAATAG---- 1086
||| |.||||||.|
RBAM_021420__ 1082 GAAAGGATGGTGACGATGTTTACAGGAATCGTTGA 1116
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