Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03455 and RBAM_021350

See Amino acid alignment / Visit BSNT_03455 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:41
# Commandline: needle
#    -asequence dna-align/BSNT_03455___ypuH.1.9828.seq
#    -bsequence dna-align/RBAM_021350___scpB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03455___ypuH-RBAM_021350___scpB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03455___ypuH-RBAM_021350___scpB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03455___ypuH
# 2: RBAM_021350___scpB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 595
# Identity:     471/595 (79.2%)
# Similarity:   471/595 (79.2%)
# Gaps:           2/595 ( 0.3%)
# Score: 1847.0
# 
#
#=======================================

BSNT_03455___      1 ATGGGGCTTGATATCGTGAATTGGAAAGCTATTGTGGAAGCCCTTCTTTA     50
                     ||||.||||||||||||||||||||||||.||||||||||||||.||.||
RBAM_021350__      1 ATGGCGCTTGATATCGTGAATTGGAAAGCGATTGTGGAAGCCCTGCTGTA     50

BSNT_03455___     51 TGCGGCAGGCGATGAAGGGCTTACAAAAAAGCAGCTGTTAACAGTGCTTG    100
                     ||||||.||.|||||||||||.||.||||||||..||.|.||.|||||||
RBAM_021350__     51 TGCGGCGGGTGATGAAGGGCTGACCAAAAAGCAATTGGTGACGGTGCTTG    100

BSNT_03455___    101 AAATCGAAGAGCCTGAACTGAACACGATCATGGCGGATGTGGCGGACGAA    150
                     ||||.|||||..|.||||||..|...|||||||..||.|||||.|...|.
RBAM_021350__    101 AAATAGAAGAAGCGGAACTGGCCGGAATCATGGAAGAAGTGGCCGCTCAG    150

BSNT_03455___    151 TACCGCGAAGA-TACACGAGGGATTGAACTTATTGAGTATGCAGATACGT    199
                     |||...||||| .||| ||||.||.||.||||..||.|||||.|||||||
RBAM_021350__    151 TACAAGGAAGACGACA-GAGGCATCGAGCTTACCGAATATGCGGATACGT    199

BSNT_03455___    200 ACATGCTCTCTACCAAAAAAGACTTTGCGCCTTACTTGAAAAAACTGATT    249
                     |.|||||....||.||||||||.||.|.||||||.|||||||||||.||.
RBAM_021350__    200 ATATGCTTGGAACGAAAAAAGAATTCGTGCCTTATTTGAAAAAACTAATC    249

BSNT_03455___    250 GAAGTGCCGTCAAAGGGCCTTTCTCAAGCATCTTTAGAAGTACTGGCCAT    299
                     ||||||||||||||.||.||.||.||.||.|||||.|||||.|||||.||
RBAM_021350__    250 GAAGTGCCGTCAAAAGGGCTGTCACAGGCTTCTTTGGAAGTGCTGGCGAT    299

BSNT_03455___    300 TGTTTCATACAAACAGCCAATTACGAGAGCAGAAATTGAAGAAATCAGAG    349
                     .|||||.|||||.|||||.||.||..|.||.|||||||||||.|||.|.|
RBAM_021350__    300 CGTTTCGTACAAGCAGCCGATCACACGGGCGGAAATTGAAGATATCCGGG    349

BSNT_03455___    350 GAGTAAAATCAGAGCGGATTTTACACAGTCTTGTCGCGAAGGCGCTATTG    399
                     |.||.||.||.|||||||||.|.|||||.||.||..|.||.|||||..||
RBAM_021350__    350 GTGTGAAGTCTGAGCGGATTCTGCACAGCCTCGTGTCAAAAGCGCTGCTG    399

BSNT_03455___    400 TGTGAAGTAGGGCGTGCCGATGGTCCGGGGCGGGCCATTTTATACGGTAC    449
                     |||||.||.||.||.|||||.|||||.||.|||||.|||||||||||.||
RBAM_021350__    400 TGTGAGGTGGGCCGCGCCGACGGTCCCGGCCGGGCGATTTTATACGGCAC    449

BSNT_03455___    450 TACGCCGACTTTTCTTGAACAATTCGGTCTGAAAACGCTGGACGAGCTTC    499
                     .||.|||...|||||||||||||||||..|.|||||..||||.|||||.|
RBAM_021350__    450 GACACCGGTATTTCTTGAACAATTCGGCTTAAAAACATTGGAGGAGCTCC    499

BSNT_03455___    500 CGCCGCTGCCTGAAAATGCGGAAGAAGACGTTCTTCAAGAAGAAGCAGAT    549
                     |||||||.||||||||||||||.|||||||||||.||.||.|||||.|||
RBAM_021350__    500 CGCCGCTTCCTGAAAATGCGGAGGAAGACGTTCTCCAGGAGGAAGCCGAT    549

BSNT_03455___    550 TTATTTTTTGAAAACTTTAACCAAACCTTCGAAGATATAAAATAG    594
                     |||||.|||||||||||.||||||||.||.||.|||||.|||||.
RBAM_021350__    550 TTATTCTTTGAAAACTTCAACCAAACTTTTGAGGATATTAAATAA    594


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