Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03453 and RBAM_021340

See Amino acid alignment / Visit BSNT_03453 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:41
# Commandline: needle
#    -asequence dna-align/BSNT_03453___ypuI.1.9828.seq
#    -bsequence dna-align/RBAM_021340___ypuI.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03453___ypuI-RBAM_021340___ypuI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03453___ypuI-RBAM_021340___ypuI.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03453___ypuI
# 2: RBAM_021340___ypuI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 572
# Identity:     375/572 (65.6%)
# Similarity:   375/572 (65.6%)
# Gaps:          73/572 (12.8%)
# Score: 1173.5
# 
#
#=======================================

BSNT_03453___      1 ATGAAAGAAGCAAAATGTGAGAGACAAAG-ACATGAGGGGAAGATACCAA     49
                         |.||.|||||       .|||.|.| |||.|||.|||||    .||
RBAM_021340__      1 ----ATGACGCAAA-------TGACGACGTACAAGAGAGGAAG----GAA     35

BSNT_03453___     50 AC-----GAAATGGGACATTCGATTGTGCGAGCGCAGACTCAAAAAACAG     94
                     ||     |||||||||.|||||||||||.|.||.||.|||.||.||||.|
RBAM_021340__     36 ACGGACGGAAATGGGAAATTCGATTGTGAGGGCCCATACTGAAGAAACTG     85

BSNT_03453___     95 GCGAATTCTTATCAATGGTTGTCAATACCGTGAACGAT----------TA    134
                     |.|||||.|||.|...|||||||          |||||          ||
RBAM_021340__     86 GTGAATTTTTAGCCGAGGTTGTC----------ACGATGGTCAGCAGCTA    125

BSNT_03453___    135 CCTAAATCAAACGAC---GCTTGAGTCCTTACAGGCTGAATTGCCTATTG    181
                     ..|||||||.||.||   ||..|||   .|.|.||||.||         |
RBAM_021340__    126 TTTAAATCATACAACTTTGCCGGAG---ATGCGGGCTCAA---------G    163

BSNT_03453___    182 AAAA--------AGG-ATACTGCTGTGATGTGCTGAGCACTCTGAGAAGA    222
                     .|.|        ||| |||||||.|.||.|||||.||....|||||.||.
RBAM_021340__    164 GAGAGGCGGATGAGGCATACTGCCGCGACGTGCTCAGTGTGCTGAGGAGG    213

BSNT_03453___    223 ATGGCAGTATTTTGTGAAGGAGGCGCA-GAAGCGTGCCGCCGTCTCCTGA    271
                     |||.|.||.|||||.||||| .||.|| |||||.|||.|.||.||..|.|
RBAM_021340__    214 ATGACCGTTTTTTGCGAAGG-CGCCCAGGAAGCCTGCAGGCGGCTTTTAA    262

BSNT_03453___    272 TGCAGGAGCCTTTTCAGGAAGCCAGAGCGGAAAAAACACTTTATAATGTG    321
                     ||||||||||.|||||.||.||.||||||||||||||.||.|||||.||.
RBAM_021340__    263 TGCAGGAGCCGTTTCATGAGGCGAGAGCGGAAAAAACGCTGTATAAAGTA    312

BSNT_03453___    322 TATCACCAATGCATTGAAGAGTTCTTTATGCCGAAAAAAGACACGTGGTG    371
                     |||||.||.|||.|.||||||||.||.|||||||||||.||.||.||||.
RBAM_021340__    313 TATCATCAGTGCGTGGAAGAGTTTTTCATGCCGAAAAAGGATACATGGTA    362

BSNT_03453___    372 TGAAAATAGCCGGGCGTCTTATACCGGGGTCAGCGCAATTGAGTTTTATC    421
                     .|||||.|||||.||..|||||||.||....|||||.|||||.||.||.|
RBAM_021340__    363 CGAAAACAGCCGCGCCGCTTATACAGGCCAAAGCGCGATTGAATTCTACC    412

BSNT_03453___    422 ATGC-TGTTCCTGCGTCGCT--TGAGCAATTATTATTGCCGTTGAGCGCG    468
                     | || .||.||.|..|||||  .|||| .||.|..|| .||.|.|||...
RBAM_021340__    413 A-GCAAGTGCCGGACTCGCTGCGGAGC-CTTCTGCTT-TCGCTCAGCAGT    459

BSNT_03453___    469 GCCTTTCTGAAGATGAGGGAAGAGCTGGCTCATTACGAAGCGTCCGGATC    518
                     |..||||||...|||.|||||||..||||.||.||.|||||.||.||.||
RBAM_021340__    460 GAATTTCTGCGCATGCGGGAAGAATTGGCGCAATATGAAGCATCAGGCTC    509

BSNT_03453___    519 AAGCATGGCGCCAATCAGATAA    540
                     ||..|||||..||.||||||||
RBAM_021340__    510 AAATATGGCATCAGTCAGATAA    531


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