Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03453 and RBAM_021340
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:41
# Commandline: needle
# -asequence dna-align/BSNT_03453___ypuI.1.9828.seq
# -bsequence dna-align/RBAM_021340___ypuI.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03453___ypuI-RBAM_021340___ypuI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03453___ypuI-RBAM_021340___ypuI.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03453___ypuI
# 2: RBAM_021340___ypuI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 572
# Identity: 375/572 (65.6%)
# Similarity: 375/572 (65.6%)
# Gaps: 73/572 (12.8%)
# Score: 1173.5
#
#
#=======================================
BSNT_03453___ 1 ATGAAAGAAGCAAAATGTGAGAGACAAAG-ACATGAGGGGAAGATACCAA 49
|.||.||||| .|||.|.| |||.|||.||||| .||
RBAM_021340__ 1 ----ATGACGCAAA-------TGACGACGTACAAGAGAGGAAG----GAA 35
BSNT_03453___ 50 AC-----GAAATGGGACATTCGATTGTGCGAGCGCAGACTCAAAAAACAG 94
|| |||||||||.|||||||||||.|.||.||.|||.||.||||.|
RBAM_021340__ 36 ACGGACGGAAATGGGAAATTCGATTGTGAGGGCCCATACTGAAGAAACTG 85
BSNT_03453___ 95 GCGAATTCTTATCAATGGTTGTCAATACCGTGAACGAT----------TA 134
|.|||||.|||.|...||||||| ||||| ||
RBAM_021340__ 86 GTGAATTTTTAGCCGAGGTTGTC----------ACGATGGTCAGCAGCTA 125
BSNT_03453___ 135 CCTAAATCAAACGAC---GCTTGAGTCCTTACAGGCTGAATTGCCTATTG 181
..|||||||.||.|| ||..||| .|.|.||||.|| |
RBAM_021340__ 126 TTTAAATCATACAACTTTGCCGGAG---ATGCGGGCTCAA---------G 163
BSNT_03453___ 182 AAAA--------AGG-ATACTGCTGTGATGTGCTGAGCACTCTGAGAAGA 222
.|.| ||| |||||||.|.||.|||||.||....|||||.||.
RBAM_021340__ 164 GAGAGGCGGATGAGGCATACTGCCGCGACGTGCTCAGTGTGCTGAGGAGG 213
BSNT_03453___ 223 ATGGCAGTATTTTGTGAAGGAGGCGCA-GAAGCGTGCCGCCGTCTCCTGA 271
|||.|.||.|||||.||||| .||.|| |||||.|||.|.||.||..|.|
RBAM_021340__ 214 ATGACCGTTTTTTGCGAAGG-CGCCCAGGAAGCCTGCAGGCGGCTTTTAA 262
BSNT_03453___ 272 TGCAGGAGCCTTTTCAGGAAGCCAGAGCGGAAAAAACACTTTATAATGTG 321
||||||||||.|||||.||.||.||||||||||||||.||.|||||.||.
RBAM_021340__ 263 TGCAGGAGCCGTTTCATGAGGCGAGAGCGGAAAAAACGCTGTATAAAGTA 312
BSNT_03453___ 322 TATCACCAATGCATTGAAGAGTTCTTTATGCCGAAAAAAGACACGTGGTG 371
|||||.||.|||.|.||||||||.||.|||||||||||.||.||.||||.
RBAM_021340__ 313 TATCATCAGTGCGTGGAAGAGTTTTTCATGCCGAAAAAGGATACATGGTA 362
BSNT_03453___ 372 TGAAAATAGCCGGGCGTCTTATACCGGGGTCAGCGCAATTGAGTTTTATC 421
.|||||.|||||.||..|||||||.||....|||||.|||||.||.||.|
RBAM_021340__ 363 CGAAAACAGCCGCGCCGCTTATACAGGCCAAAGCGCGATTGAATTCTACC 412
BSNT_03453___ 422 ATGC-TGTTCCTGCGTCGCT--TGAGCAATTATTATTGCCGTTGAGCGCG 468
| || .||.||.|..||||| .|||| .||.|..|| .||.|.|||...
RBAM_021340__ 413 A-GCAAGTGCCGGACTCGCTGCGGAGC-CTTCTGCTT-TCGCTCAGCAGT 459
BSNT_03453___ 469 GCCTTTCTGAAGATGAGGGAAGAGCTGGCTCATTACGAAGCGTCCGGATC 518
|..||||||...|||.|||||||..||||.||.||.|||||.||.||.||
RBAM_021340__ 460 GAATTTCTGCGCATGCGGGAAGAATTGGCGCAATATGAAGCATCAGGCTC 509
BSNT_03453___ 519 AAGCATGGCGCCAATCAGATAA 540
||..|||||..||.||||||||
RBAM_021340__ 510 AAATATGGCATCAGTCAGATAA 531
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