Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03440 and RBAM_021260

See Amino acid alignment / Visit BSNT_03440 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:40
# Commandline: needle
#    -asequence dna-align/BSNT_03440___resD.1.9828.seq
#    -bsequence dna-align/RBAM_021260___resD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03440___resD-RBAM_021260___resD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03440___resD-RBAM_021260___resD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03440___resD
# 2: RBAM_021260___resD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 765
# Identity:     581/765 (75.9%)
# Similarity:   581/765 (75.9%)
# Gaps:          51/765 ( 6.7%)
# Score: 2316.5
# 
#
#=======================================

BSNT_03440___      1 ATGAAAGTAACAGAAGGAAAGCAGGGGGAAAACATGGACCAAACGAACGA     50
                                                      |||||.|||||.||.||
RBAM_021260__      1 ---------------------------------ATGGATCAAACAAATGA     17

BSNT_03440___     51 AACAAAAATATTAGTAGTTGATGACGAAGCCAGAATTCGCCGCCTTTTAA    100
                     |||.||||||||||||||.|||||.||||||||||||||.||||||||||
RBAM_021260__     18 AACTAAAATATTAGTAGTAGATGATGAAGCCAGAATTCGACGCCTTTTAA     67

BSNT_03440___    101 GAATGTATCTTGAACGTGAAAATTATGCTATAGATGAAGCTGAAAATGGT    150
                     |||||||.||||||||.|||||.||||..||.||.|||||.|||||.||.
RBAM_021260__     68 GAATGTACCTTGAACGGGAAAACTATGTGATTGAAGAAGCGGAAAACGGC    117

BSNT_03440___    151 GATGAAGCCATTGCCAAA---GGGCTTGAAGCCAATTATGACTTAATTTT    197
                     ||.||.||||||   |||   |||||.|.|.|..|||||||      |.|
RBAM_021260__    118 GACGAGGCCATT---AAAATGGGGCTGGCATCAGATTATGA------TCT    158

BSNT_03440___    198 G-----CTT-GATCTGATGATGCCGGGGACTGATGGAATTGAAGTGTGCC    241
                     |     ||| |||.|.|||||||||||.||.||.|||||.|||||.||||
RBAM_021260__    159 GGTGCTCTTGGATTTAATGATGCCGGGAACGGACGGAATCGAAGTATGCC    208

BSNT_03440___    242 GGCAAATTCGTGAAAAAAAAGCGACACCCATTATTATGCTGACCGCAAAA    291
                     ||||..|..|.||||||||||||||.||.|||||.||||||||.||||||
RBAM_021260__    209 GGCAGCTCAGAGAAAAAAAAGCGACGCCGATTATCATGCTGACGGCAAAA    258

BSNT_03440___    292 GGAGAAGAAGCAAATCGGGTGCAGGGGTTTGAAGCGGGAACAGATGATTA    341
                     ||.||||||||.||.||.||.|||||||||||||||||.||.||.|||||
RBAM_021260__    259 GGGGAAGAAGCCAACCGCGTTCAGGGGTTTGAAGCGGGTACGGACGATTA    308

BSNT_03440___    342 TATTGTTAAGCCGTTCAGCCCGAGAGAAGTCGTGCTGCGTGTAAAGGCCC    391
                     |||.||.|||||.|||||||||||||||||.|||||.||.||||||||.|
RBAM_021260__    309 TATCGTCAAGCCTTTCAGCCCGAGAGAAGTGGTGCTTCGGGTAAAGGCGC    358

BSNT_03440___    392 TTTTGAGAAGAGCATCCCAAACCTCTTATTTCAATGCCAATACACCGACG    441
                     ||||.|||||.||.||||||||.||||||.|.|..||||||||.|||||.
RBAM_021260__    359 TTTTAAGAAGGGCTTCCCAAACATCTTATCTGACAGCCAATACCCCGACA    408

BSNT_03440___    442 AAAAATGTGCTCGTGTTTTCACATCTGTCAATAGACCATGATGCTCACCG    491
                     ||||||||||||||.|||||.|||||.||.||.||.||.|||||||||.|
RBAM_021260__    409 AAAAATGTGCTCGTCTTTTCGCATCTATCCATTGATCACGATGCTCACAG    458

BSNT_03440___    492 CGTAACAGCTGATGGAACAGAAGTGAGCCTGACGCCAAAAGAGTATGAGC    541
                     .||.||.||.||.||.||.||.||||||||||||||.||.||.|||||.|
RBAM_021260__    459 GGTGACTGCGGACGGCACGGAGGTGAGCCTGACGCCGAAGGAATATGAAC    508

BSNT_03440___    542 TTCTATATTTCTTAGCGAAAACGCCTGACAAGGTGTATGATCGGGAAAAG    591
                     |.||.||.|||.|.||||||||.||.|||||.|||||.||..||||||||
RBAM_021260__    509 TGCTGTACTTCCTGGCGAAAACACCGGACAAAGTGTACGACAGGGAAAAG    558

BSNT_03440___    592 CTTCTGAAAGAAGTGTGGCAATATGAGTTTTTTGGTGATTTACGGACAGT    641
                     |||.|.||||||||||||||.|||||.|||||.||.||..|..|.||.||
RBAM_021260__    559 CTTTTAAAAGAAGTGTGGCAGTATGAATTTTTCGGAGACCTCAGAACGGT    608

BSNT_03440___    642 GGACACTCACGTCAAACGTTTGAGAGAGAAGCTGAACAAGGTATCTCCGG    691
                     ||||||.||.||||||||..|..|.||.||..|.||.||.||.||.||||
RBAM_021260__    609 GGACACCCATGTCAAACGGCTCCGTGAAAAATTAAATAAAGTGTCCCCGG    658

BSNT_03440___    692 AAGCTGCGAAAAAAATTGTCACAGTATGGGGTGTAGGTTATAAATTTGAG    741
                     .|||.|||||||||||.|||||.||||||||.||.||.||.|||||||||
RBAM_021260__    659 GAGCGGCGAAAAAAATCGTCACCGTATGGGGAGTCGGATACAAATTTGAG    708

BSNT_03440___    742 GTCGGCGCTGAATGA    756
                     ||.||||||||||||
RBAM_021260__    709 GTAGGCGCTGAATGA    723


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