Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03436 and RBAM_021230

See Amino acid alignment / Visit BSNT_03436 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:39
# Commandline: needle
#    -asequence dna-align/BSNT_03436.1.9828.seq
#    -bsequence dna-align/RBAM_021230___rsiX.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03436-RBAM_021230___rsiX.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03436-RBAM_021230___rsiX.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03436
# 2: RBAM_021230___rsiX
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1276
# Identity:     615/1276 (48.2%)
# Similarity:   615/1276 (48.2%)
# Gaps:         449/1276 (35.2%)
# Score: 1425.0
# 
#
#=======================================

BSNT_03436         0 --------------------------------------------------      0
                                                                       
RBAM_021230__      1 ATGATGAAGTCATATTGGAACGAAGAAAGAGTAGAGGAGTTGTTAAGACA     50

BSNT_03436         1 -------------------------------------------------A      1
                                                                      |
RBAM_021230__     51 ACTTCCGGCGGTTAGAGATCATCGTTCACCCGAGGCCATTTACCGGAATA    100

BSNT_03436         2 T-------GGCAAAGCGTA----AAAATAA---GCCCGCTGTCAGGTGGA     37
                     |       ||.|||.||||    |||| ||   |||||    .||.||||
RBAM_021230__    101 TTGAAACGGGTAAACCGTACAGGAAAA-AACCGGCCCG----AAGCTGGA    145

BSNT_03436        38 TTGGCCCCGCGTGTGCCGCTGCAATTGCGGTTTAT--ATCGCCTTCATTA     85
                     |.||||||||....||||  |||..||||..||.|  |||||..|.||||
RBAM_021230__    146 TCGGCCCCGCCGCAGCCG--GCATCTGCGCATTGTGCATCGCTCTGATTA    193

BSNT_03436        86 TTTCTCCTCATTTCTTTGATCAGGCACAGCCTCA--ACAAAAAGAAGCGT    133
                     |.||||||||                   |||.|  |||||.| ||.|.|
RBAM_021230__    194 TATCTCCTCA-------------------CCTGATGACAAACA-AATCTT    223

BSNT_03436       134 CCCAAGAGAACGCAGTAACGAAAACTGAGACAG----AAGACAGCCCAAA    179
                     ||  .|.||.|   .||.||    ||  |||||    .||||||  .|||
RBAM_021230__    224 CC--GGTGATC---TTACCG----CT--GACAGCCGCCAGACAG--AAAA    260

BSNT_03436       180 AGCTGCA-TC-GTC--CTT-------------GGATCATACATCGTTTGT    212
                     |||  || || |||  |||             ||||||.|...||||.||
RBAM_021230__    261 AGC--CAGTCAGTCAGCTTCTGTCAAGCCGCCGGATCAGAAGACGTTCGT    308

BSNT_03436       213 TGTACCTGAA---AAGGAAC-AAGACAATTACATCACTGTAGCAGTTGCT    258
                     .||  ||.||   ||  ||| ||.||||||||||.|||.|.|||.||||.
RBAM_021230__    309 CGT--CTCAAACCAA--AACAAAAACAATTACATTACTTTGGCATTTGCC    354

BSNT_03436       259 GATGCCGATACATCCGCAATCATACCCGTCAGCATCCAAAAAACAAATGC    308
                     |||.|.||.||||||||..|||||||.|||||..|..||||||..||..|
RBAM_021230__    355 GATTCAGAAACATCCGCCGTCATACCGGTCAGTTTTGAAAAAAAGAAGCC    404

BSNT_03436       309 AGACCAAAC-GATCCAGGATATGCTGTTT--------GAAA--GTAGTGA    347
                     .||..||.| |.|.|||   |.|||.|.|        ||||  .||  ||
RBAM_021230__    405 GGATGAATCGGTTTCAG---AGGCTTTATCCGAAGCGGAAAACCTA--GA    449

BSNT_03436       348 ATTG--GGCATCCTTGATCATGCCATTACAATTCCAACCTTCATAGATGA    395
                     |.||  .|.|||||   ||.||.|..|.|    |.|||||| .|.||.|.
RBAM_021230__    450 AGTGCCCGAATCCT---TCCTGTCTGTGC----CGAACCTT-TTGGAAGG    491

BSNT_03436       396 AGTAGAAATAAAGGAAAAACCAAAGCAGAAGGAATT--------AAGTAT    437
                     .||..|..|||.||      |..|..|||||||.||        |.|||.
RBAM_021230__    492 TGTGCAGGTAACGG------CGGATAAGAAGGATTTGCTTGTGCAGGTAA    535

BSNT_03436       438 ACGAGTCCATCAGCCAGCTACGGCATTTTCTGTAAAA---------GATG    478
                     |||               .|||||  |.|||.|..||         ||||
RBAM_021230__    536 ACG---------------GACGGC--TCTCTATCGAATCAGTTGCCGATG    568

BSNT_03436       479 ATACACTG-----TTAAAAAAATTGCTTAAAGAATCCTTAAAATGGAGTC    523
                          |||     ||.|||||..||||.|||||..|.||.|.||||||||
RBAM_021230__    569 -----CTGACTTATTGAAAAAGATGCTGAAAGAGACTTTGACATGGAGTC    613

BSNT_03436       524 CTTA--------------TGAAAAAG--TCAA----------------AT    541
                     ||||              ||||||||  ||||                ||
RBAM_021230__    614 CTTACGAGCGGATTAAATTGAAAAAGGTTCAAAACGGAGCCGGACAGGAT    663

BSNT_03436       542 TTTTATCGGATCAAAATGAGACTGGGGTTCGGATTGGCTCATATGGCACT    591
                     ||||||       |||                      ||.||.||||  
RBAM_021230__    664 TTTTAT-------AAA----------------------TCTTACGGCA--    682

BSNT_03436       592 TTTACG--GAAATTTCGATTCCCAAACAGTCAAAAAGAGCTTACTACTTG    639
                     |||.||  ||.||.||..|.|..||||||.||||..|.||.||.|..|..
RBAM_021230__    683 TTTCCGCTGAGATGTCCGTACATAAACAGACAAACCGGGCGTATTTTTCT    732

BSNT_03436       640 TATAAAAATA------AACAAGGGAACTTTCTCATTCCGTCAGAAAAAAC    683
                     ||.|...|.|      .|||||   |.|.||||||.|||||.|||.||||
RBAM_021230__    733 TACAGCGACAGTCTGGGACAAG---AGTATCTCATCCCGTCTGAACAAAC    779

BSNT_03436       684 ATTTGATACGGTAAAAGAAGCGATTAATGAAATGGAATCGAGCAGCCAAG    733
                     .|.|.||.|.|||.|..|.||.|||.|.|..||                |
RBAM_021230__    780 CTATTATTCAGTATATCAGGCTATTGACGGGAT----------------G    813

BSNT_03436       734 AAGATACAACA-CCGCTTATTCAAGCGGGT-----ACTGTCCAATCTGTA    777
                     |||  |||||| .||         |.||.|     ||||           
RBAM_021230__    814 AAG--ACAACAGACG---------GAGGCTCACAGACTG-----------    841

BSNT_03436       778 ACGA-------AGAAACAGAAGCACTTATATATCCGTTTCTCAAAG----    816
                      |||       ||||.||||.||..|  |..|||.||.||..||||    
RBAM_021230__    842 -CGAGCATTATAGAAGCAGATGCGAT--TGCATCGGTATCGGAAAGGGAA    888

BSNT_03436       817 GAC--TCAGAAGTTGAGGATTCTATTGCC---------------------    843
                     |||  ..||.||.||.||||||.||||.|                     
RBAM_021230__    889 GACGGCGAGCAGCTGCGGATTCAATTGTCCGAAAAACATAAGGTTGAAAA    938

BSNT_03436       844 ----------GGTATTTTAATGATTGAGGGACTTCTTTTAACCGCAAAAG    883
                               ||.|||||||||||.||.||.|||||.|||||.||.||.|
RBAM_021230__    939 TTCGCTGGAAGGGATTTTAATGATCGAAGGGCTTCTGTTAACGGCGAAGG    988

BSNT_03436       884 AGTTTGGCTTCACAGAAGTGACCTTTAC-----CGAAACCAGAACAAACA    928
                     |.||.||.|...|.||.|||...||.||     ||.|     .|||||.|
RBAM_021230__    989 AATTCGGTTATTCTGAGGTGCTGTTCACACATGCGCA-----TACAAAGA   1033

BSNT_03436       929 AAATCGGCAAATATGACGTATCAGATGCAATTCCGGTACCGGCTGCTCCA    978
                     |||||||.||.|||||.||..||.|..|.||..|.||.||.||.||.||.
RBAM_021230__   1034 AAATCGGTAATTATGATGTGACAAAACCTATCGCTGTCCCTGCCGCGCCT   1083

BSNT_03436       979 AATCCGATTTTCTT--AA---ACTAA    999
                     ||||||     |||  ||   |.|||
RBAM_021230__   1084 AATCCG-----CTTCCAAGCCATTAA   1104


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