Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03436 and RBAM_021230
See
Amino acid alignment /
Visit
BSNT_03436 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:39
# Commandline: needle
# -asequence dna-align/BSNT_03436.1.9828.seq
# -bsequence dna-align/RBAM_021230___rsiX.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03436-RBAM_021230___rsiX.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03436-RBAM_021230___rsiX.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03436
# 2: RBAM_021230___rsiX
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1276
# Identity: 615/1276 (48.2%)
# Similarity: 615/1276 (48.2%)
# Gaps: 449/1276 (35.2%)
# Score: 1425.0
#
#
#=======================================
BSNT_03436 0 -------------------------------------------------- 0
RBAM_021230__ 1 ATGATGAAGTCATATTGGAACGAAGAAAGAGTAGAGGAGTTGTTAAGACA 50
BSNT_03436 1 -------------------------------------------------A 1
|
RBAM_021230__ 51 ACTTCCGGCGGTTAGAGATCATCGTTCACCCGAGGCCATTTACCGGAATA 100
BSNT_03436 2 T-------GGCAAAGCGTA----AAAATAA---GCCCGCTGTCAGGTGGA 37
| ||.|||.|||| |||| || ||||| .||.||||
RBAM_021230__ 101 TTGAAACGGGTAAACCGTACAGGAAAA-AACCGGCCCG----AAGCTGGA 145
BSNT_03436 38 TTGGCCCCGCGTGTGCCGCTGCAATTGCGGTTTAT--ATCGCCTTCATTA 85
|.||||||||....|||| |||..||||..||.| |||||..|.||||
RBAM_021230__ 146 TCGGCCCCGCCGCAGCCG--GCATCTGCGCATTGTGCATCGCTCTGATTA 193
BSNT_03436 86 TTTCTCCTCATTTCTTTGATCAGGCACAGCCTCA--ACAAAAAGAAGCGT 133
|.|||||||| |||.| |||||.| ||.|.|
RBAM_021230__ 194 TATCTCCTCA-------------------CCTGATGACAAACA-AATCTT 223
BSNT_03436 134 CCCAAGAGAACGCAGTAACGAAAACTGAGACAG----AAGACAGCCCAAA 179
|| .|.||.| .||.|| || ||||| .|||||| .|||
RBAM_021230__ 224 CC--GGTGATC---TTACCG----CT--GACAGCCGCCAGACAG--AAAA 260
BSNT_03436 180 AGCTGCA-TC-GTC--CTT-------------GGATCATACATCGTTTGT 212
||| || || ||| ||| ||||||.|...||||.||
RBAM_021230__ 261 AGC--CAGTCAGTCAGCTTCTGTCAAGCCGCCGGATCAGAAGACGTTCGT 308
BSNT_03436 213 TGTACCTGAA---AAGGAAC-AAGACAATTACATCACTGTAGCAGTTGCT 258
.|| ||.|| || ||| ||.||||||||||.|||.|.|||.||||.
RBAM_021230__ 309 CGT--CTCAAACCAA--AACAAAAACAATTACATTACTTTGGCATTTGCC 354
BSNT_03436 259 GATGCCGATACATCCGCAATCATACCCGTCAGCATCCAAAAAACAAATGC 308
|||.|.||.||||||||..|||||||.|||||..|..||||||..||..|
RBAM_021230__ 355 GATTCAGAAACATCCGCCGTCATACCGGTCAGTTTTGAAAAAAAGAAGCC 404
BSNT_03436 309 AGACCAAAC-GATCCAGGATATGCTGTTT--------GAAA--GTAGTGA 347
.||..||.| |.|.||| |.|||.|.| |||| .|| ||
RBAM_021230__ 405 GGATGAATCGGTTTCAG---AGGCTTTATCCGAAGCGGAAAACCTA--GA 449
BSNT_03436 348 ATTG--GGCATCCTTGATCATGCCATTACAATTCCAACCTTCATAGATGA 395
|.|| .|.||||| ||.||.|..|.| |.|||||| .|.||.|.
RBAM_021230__ 450 AGTGCCCGAATCCT---TCCTGTCTGTGC----CGAACCTT-TTGGAAGG 491
BSNT_03436 396 AGTAGAAATAAAGGAAAAACCAAAGCAGAAGGAATT--------AAGTAT 437
.||..|..|||.|| |..|..|||||||.|| |.|||.
RBAM_021230__ 492 TGTGCAGGTAACGG------CGGATAAGAAGGATTTGCTTGTGCAGGTAA 535
BSNT_03436 438 ACGAGTCCATCAGCCAGCTACGGCATTTTCTGTAAAA---------GATG 478
||| .||||| |.|||.|..|| ||||
RBAM_021230__ 536 ACG---------------GACGGC--TCTCTATCGAATCAGTTGCCGATG 568
BSNT_03436 479 ATACACTG-----TTAAAAAAATTGCTTAAAGAATCCTTAAAATGGAGTC 523
||| ||.|||||..||||.|||||..|.||.|.||||||||
RBAM_021230__ 569 -----CTGACTTATTGAAAAAGATGCTGAAAGAGACTTTGACATGGAGTC 613
BSNT_03436 524 CTTA--------------TGAAAAAG--TCAA----------------AT 541
|||| |||||||| |||| ||
RBAM_021230__ 614 CTTACGAGCGGATTAAATTGAAAAAGGTTCAAAACGGAGCCGGACAGGAT 663
BSNT_03436 542 TTTTATCGGATCAAAATGAGACTGGGGTTCGGATTGGCTCATATGGCACT 591
|||||| ||| ||.||.||||
RBAM_021230__ 664 TTTTAT-------AAA----------------------TCTTACGGCA-- 682
BSNT_03436 592 TTTACG--GAAATTTCGATTCCCAAACAGTCAAAAAGAGCTTACTACTTG 639
|||.|| ||.||.||..|.|..||||||.||||..|.||.||.|..|..
RBAM_021230__ 683 TTTCCGCTGAGATGTCCGTACATAAACAGACAAACCGGGCGTATTTTTCT 732
BSNT_03436 640 TATAAAAATA------AACAAGGGAACTTTCTCATTCCGTCAGAAAAAAC 683
||.|...|.| .||||| |.|.||||||.|||||.|||.||||
RBAM_021230__ 733 TACAGCGACAGTCTGGGACAAG---AGTATCTCATCCCGTCTGAACAAAC 779
BSNT_03436 684 ATTTGATACGGTAAAAGAAGCGATTAATGAAATGGAATCGAGCAGCCAAG 733
.|.|.||.|.|||.|..|.||.|||.|.|..|| |
RBAM_021230__ 780 CTATTATTCAGTATATCAGGCTATTGACGGGAT----------------G 813
BSNT_03436 734 AAGATACAACA-CCGCTTATTCAAGCGGGT-----ACTGTCCAATCTGTA 777
||| |||||| .|| |.||.| ||||
RBAM_021230__ 814 AAG--ACAACAGACG---------GAGGCTCACAGACTG----------- 841
BSNT_03436 778 ACGA-------AGAAACAGAAGCACTTATATATCCGTTTCTCAAAG---- 816
||| ||||.||||.||..| |..|||.||.||..||||
RBAM_021230__ 842 -CGAGCATTATAGAAGCAGATGCGAT--TGCATCGGTATCGGAAAGGGAA 888
BSNT_03436 817 GAC--TCAGAAGTTGAGGATTCTATTGCC--------------------- 843
||| ..||.||.||.||||||.||||.|
RBAM_021230__ 889 GACGGCGAGCAGCTGCGGATTCAATTGTCCGAAAAACATAAGGTTGAAAA 938
BSNT_03436 844 ----------GGTATTTTAATGATTGAGGGACTTCTTTTAACCGCAAAAG 883
||.|||||||||||.||.||.|||||.|||||.||.||.|
RBAM_021230__ 939 TTCGCTGGAAGGGATTTTAATGATCGAAGGGCTTCTGTTAACGGCGAAGG 988
BSNT_03436 884 AGTTTGGCTTCACAGAAGTGACCTTTAC-----CGAAACCAGAACAAACA 928
|.||.||.|...|.||.|||...||.|| ||.| .|||||.|
RBAM_021230__ 989 AATTCGGTTATTCTGAGGTGCTGTTCACACATGCGCA-----TACAAAGA 1033
BSNT_03436 929 AAATCGGCAAATATGACGTATCAGATGCAATTCCGGTACCGGCTGCTCCA 978
|||||||.||.|||||.||..||.|..|.||..|.||.||.||.||.||.
RBAM_021230__ 1034 AAATCGGTAATTATGATGTGACAAAACCTATCGCTGTCCCTGCCGCGCCT 1083
BSNT_03436 979 AATCCGATTTTCTT--AA---ACTAA 999
|||||| ||| || |.|||
RBAM_021230__ 1084 AATCCG-----CTTCCAAGCCATTAA 1104
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.