Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03427 and RBAM_021180
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:39
# Commandline: needle
# -asequence dna-align/BSNT_03427___ypbB.1.9828.seq
# -bsequence dna-align/RBAM_021180___ypbB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03427___ypbB-RBAM_021180___ypbB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03427___ypbB-RBAM_021180___ypbB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03427___ypbB
# 2: RBAM_021180___ypbB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1130
# Identity: 726/1130 (64.2%)
# Similarity: 726/1130 (64.2%)
# Gaps: 142/1130 (12.6%)
# Score: 2169.0
#
#
#=======================================
BSNT_03427___ 1 TTGTCATTAAATTACTTCGATATTATGGTTCTCGATTGCCTTTGCAAAAT 50
|||.|..||||.|||||.||||...||||||||||.||.||...||||||
RBAM_021180__ 1 TTGGCGATAAACTACTTTGATACCGTGGTTCTCGACTGTCTGGACAAAAT 50
BSNT_03427___ 51 AAACGGGGAACGG--TCGGGAAGCGCTGTTTTTCACCTATTCAAAGGCAA 98
|.||||.|||||| ||.| ||.|||||.|||||..||||.|||||.||
RBAM_021180__ 51 AGACGGCGAACGGACTCCG--AGTGCTGTGTTTCATTTATTAAAAGGAAA 98
BSNT_03427___ 99 GAGATCGTCACAAACCATTCAAGATGCCGGCTTATTTCAGACTGCAAAAT 148
.|..|||||.|||||||||||.|||||||||||||||||||..||.||||
RBAM_021180__ 99 AAAGTCGTCTCAAACCATTCAGGATGCCGGCTTATTTCAGATCGCTAAAT 148
BSNT_03427___ 149 ACTTTGGAATGGCGGCGCAATGTTCGAGAA----GCGATGTTTCTGAGTC 194
|.||.||.|||||..|.||.||| ||| |||||.|| |..
RBAM_021180__ 149 ATTTCGGCATGGCTTCACATTGT----GAACGCGGCGATATT-----GCG 189
BSNT_03427___ 195 GCTTGACAAGCTT----GAAA-------AGCATTCATATCTCTCGCCAAT 233
|||| ||| .||| ||.|.||||| ||.|
RBAM_021180__ 190 GCTT------CTTTGCATAAACTCACCGAGAACTCATA--------CATT 225
BSNT_03427___ 234 ---GTCTGAAACAGA------TACATACAAAGTGACAGCCAGCGGCG--C 272
|.|.|||| ||| .||.|..||||||||.||..|||||| |
RBAM_021180__ 226 ACAGCCGGAAA-AGAAGAGGGAACGTGGAAAGTGACTGCGCGCGGCGTTC 274
BSNT_03427___ 273 AGCAGTTTTAA--GGCATGCCCTTAGCGAGCGGCCTTGGCCCGTTCATTG 320
|..||.||.|| |||.| ||..|||||||||||||||....||.||
RBAM_021180__ 275 AAAAGCTTGAACGGGCGT----TTGCCGAGCGGCCTTGGCCGAAGCACTG 320
BSNT_03427___ 321 TCACGGCGCTCATTATCAGCAGGCTGCCGGTGTGCTTTGGAAAAGGCTTT 370
.||||||||..|||||||...|.||||||.....||.||||...||||||
RBAM_021180__ 321 CCACGGCGCGAATTATCAAACGCCTGCCGTCACCCTGTGGAGGCGGCTTT 370
BSNT_03427___ 371 CGCTGCTTGTGCAGGTCCTATCCCATAAACAGCAAGGGAGCAGGCAGTAT 420
|.|||||..|.||.|||||.||..|.|||.||||.....||||.||.|||
RBAM_021180__ 371 CCCTGCTCATTCAAGTCCTGTCAAACAAAGAGCATCAATGCAGTCAATAT 420
BSNT_03427___ 421 ATCCCTGTCACAAAGGATCATAAGACACTTCACTGGGTAAAGAAATACCT 470
|||||.||.|||||.|||....||||.||....|||||
RBAM_021180__ 421 ATCCCGGTTACAAACGATGTGCAGACGCTGAGATGGGT------------ 458
BSNT_03427___ 471 GTCCCGGCATACGGATCAT--------ATAGAGATGGCAAAAAGC-CTTT 511
||.||||.|||| |.|||||.|..|||.||| ||
RBAM_021180__ 459 -------CAAACGGTTCATGCGCAAAAACAGAGACGCTAAAGAGCTCT-- 499
BSNT_03427___ 512 TTGCC------ATGCTTGAGGCG---------CATTTGAAA-----AAGA 541
|| ||||.||||.|| |.|.||.|| |||
RBAM_021180__ 500 ---CCGTCCAAATGCATGAGACGCTGTTTCACCTTCTGCAAGGCGTAAG- 545
BSNT_03427___ 542 TTGAAAACAAAGCA-GCGCAAATTTTTGTCTACTCCTTAACCTC--GCAC 588
||| |..||| ||||..|||||||||||.||.|||||.|| .||.
RBAM_021180__ 546 -TGA----ACGGCAGGCGCTTATTTTTGTCTATTCTTTAACTTCATTCAA 590
BSNT_03427___ 589 CATCGGATCGGTTATACTAGCAGGCAGCTTGCTGATAC-GCTGAAAGAAG 637
|| |.|||||..|.||.|..|.|||||||||| .|.| ||||||.||||
RBAM_021180__ 591 CA--GAATCGGCAAAACGAATAAGCAGCTTGCT-CTCCAGCTGAACGAAG 637
BSNT_03427___ 638 ACGAATGGTATGTCTATATCATGTTTTGGGCTTCGGTACATTATTTTATT 687
|.|||||||||||.|...||..||||||||...|||||||||||.|||||
RBAM_021180__ 638 ATGAATGGTATGTGTCCGTCCAGTTTTGGGGAGCGGTACATTATGTTATT 687
BSNT_03427___ 688 CATTCTCTTCCGGAGTGTGAAGAT---GCTTTGTTAAAG-GATCTCCTTT 733
||.||.||||||.|.||||.|.|| |||.|| .| ||.||..|.|
RBAM_021180__ 688 CAATCGCTTCCGCAATGTGCATATCCCGCTCTG----CGCGAGCTGTTGT 733
BSNT_03427___ 734 CTGATGTGCACTTAGATAATGCCCTGACAGAGTCGACGAGGAAAACATGG 783
|.|||.||||....||.|..||.||||||.||||..|.||.|||||.|..
RBAM_021180__ 734 CCGATCTGCAGGCGGAAAGCGCGCTGACACAGTCTGCCAGAAAAACCTTA 783
BSNT_03427___ 784 CAGATGGTCAAACAAGGGTTTCCGATACATCGAATTGCTGAAATCAGAAA 833
.||.||.|..||.|||||||||||||..|.||.||.||.|...|||||||
RBAM_021180__ 784 GAGCTGTTGGAAAAAGGGTTTCCGATTGAACGGATCGCCGCGGTCAGAAA 833
BSNT_03427___ 834 GCTGAAAACAGCGACGATTGAAGACCACATTGTCGAGATTTCTCTCCATG 883
..|.|||||.||.||.||.|||||.||.||.||.||.||.||..|.|||.
RBAM_021180__ 834 TTTAAAAACCGCCACAATCGAAGATCATATCGTAGAAATATCATTGCATC 883
BSNT_03427___ 884 AGCCTGCGTTTATGATTAATGATTATGTATCAGCAGAAGACCAGC---TC 930
|||||||.|||.|.||..|..|.|||.|.||.|.|||.||.|||| |.
RBAM_021180__ 884 AGCCTGCATTTTTTATAGAACAGTATCTTTCTGAAGAGGAACAGCGTATG 933
BSNT_03427___ 931 CAAATCGCAGAGTTTGCCAAAC-GGATGCGGACGAATAAAATCAAACAAA 979
..||..||| |||||.|||| |.|| |..|||||||||||.|||||.|
RBAM_021180__ 934 ATAACGGCA---TTTGCAAAACAGCAT-CAAACGAATAAAATTAAACAGA 979
BSNT_03427___ 980 TTCGCGACGGGCTGGAACAGCGGTTCAGCTACTTTCAAATCAGACTGGCA 1029
|||||||.||..||.|...|||.||||||||.||.||.|||||.|||||.
RBAM_021180__ 980 TTCGCGAAGGAATGCAGATGCGCTTCAGCTATTTCCAGATCAGGCTGGCG 1029
BSNT_03427___ 1030 TTGACAAAGCAGGTGCAGCAATATGACTAA 1059
.||.|||||..||||.|.||..||||||.|
RBAM_021180__ 1030 CTGGCAAAGACGGTGAATCAGCATGACTGA 1059
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