Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03427 and RBAM_021180

See Amino acid alignment / Visit BSNT_03427 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:39
# Commandline: needle
#    -asequence dna-align/BSNT_03427___ypbB.1.9828.seq
#    -bsequence dna-align/RBAM_021180___ypbB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03427___ypbB-RBAM_021180___ypbB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03427___ypbB-RBAM_021180___ypbB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03427___ypbB
# 2: RBAM_021180___ypbB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1130
# Identity:     726/1130 (64.2%)
# Similarity:   726/1130 (64.2%)
# Gaps:         142/1130 (12.6%)
# Score: 2169.0
# 
#
#=======================================

BSNT_03427___      1 TTGTCATTAAATTACTTCGATATTATGGTTCTCGATTGCCTTTGCAAAAT     50
                     |||.|..||||.|||||.||||...||||||||||.||.||...||||||
RBAM_021180__      1 TTGGCGATAAACTACTTTGATACCGTGGTTCTCGACTGTCTGGACAAAAT     50

BSNT_03427___     51 AAACGGGGAACGG--TCGGGAAGCGCTGTTTTTCACCTATTCAAAGGCAA     98
                     |.||||.||||||  ||.|  ||.|||||.|||||..||||.|||||.||
RBAM_021180__     51 AGACGGCGAACGGACTCCG--AGTGCTGTGTTTCATTTATTAAAAGGAAA     98

BSNT_03427___     99 GAGATCGTCACAAACCATTCAAGATGCCGGCTTATTTCAGACTGCAAAAT    148
                     .|..|||||.|||||||||||.|||||||||||||||||||..||.||||
RBAM_021180__     99 AAAGTCGTCTCAAACCATTCAGGATGCCGGCTTATTTCAGATCGCTAAAT    148

BSNT_03427___    149 ACTTTGGAATGGCGGCGCAATGTTCGAGAA----GCGATGTTTCTGAGTC    194
                     |.||.||.|||||..|.||.|||    |||    |||||.||     |..
RBAM_021180__    149 ATTTCGGCATGGCTTCACATTGT----GAACGCGGCGATATT-----GCG    189

BSNT_03427___    195 GCTTGACAAGCTT----GAAA-------AGCATTCATATCTCTCGCCAAT    233
                     ||||      |||    .|||       ||.|.|||||        ||.|
RBAM_021180__    190 GCTT------CTTTGCATAAACTCACCGAGAACTCATA--------CATT    225

BSNT_03427___    234 ---GTCTGAAACAGA------TACATACAAAGTGACAGCCAGCGGCG--C    272
                        |.|.|||| |||      .||.|..||||||||.||..||||||  |
RBAM_021180__    226 ACAGCCGGAAA-AGAAGAGGGAACGTGGAAAGTGACTGCGCGCGGCGTTC    274

BSNT_03427___    273 AGCAGTTTTAA--GGCATGCCCTTAGCGAGCGGCCTTGGCCCGTTCATTG    320
                     |..||.||.||  |||.|    ||..|||||||||||||||....||.||
RBAM_021180__    275 AAAAGCTTGAACGGGCGT----TTGCCGAGCGGCCTTGGCCGAAGCACTG    320

BSNT_03427___    321 TCACGGCGCTCATTATCAGCAGGCTGCCGGTGTGCTTTGGAAAAGGCTTT    370
                     .||||||||..|||||||...|.||||||.....||.||||...||||||
RBAM_021180__    321 CCACGGCGCGAATTATCAAACGCCTGCCGTCACCCTGTGGAGGCGGCTTT    370

BSNT_03427___    371 CGCTGCTTGTGCAGGTCCTATCCCATAAACAGCAAGGGAGCAGGCAGTAT    420
                     |.|||||..|.||.|||||.||..|.|||.||||.....||||.||.|||
RBAM_021180__    371 CCCTGCTCATTCAAGTCCTGTCAAACAAAGAGCATCAATGCAGTCAATAT    420

BSNT_03427___    421 ATCCCTGTCACAAAGGATCATAAGACACTTCACTGGGTAAAGAAATACCT    470
                     |||||.||.|||||.|||....||||.||....|||||            
RBAM_021180__    421 ATCCCGGTTACAAACGATGTGCAGACGCTGAGATGGGT------------    458

BSNT_03427___    471 GTCCCGGCATACGGATCAT--------ATAGAGATGGCAAAAAGC-CTTT    511
                            ||.||||.||||        |.|||||.|..|||.||| ||  
RBAM_021180__    459 -------CAAACGGTTCATGCGCAAAAACAGAGACGCTAAAGAGCTCT--    499

BSNT_03427___    512 TTGCC------ATGCTTGAGGCG---------CATTTGAAA-----AAGA    541
                        ||      ||||.||||.||         |.|.||.||     ||| 
RBAM_021180__    500 ---CCGTCCAAATGCATGAGACGCTGTTTCACCTTCTGCAAGGCGTAAG-    545

BSNT_03427___    542 TTGAAAACAAAGCA-GCGCAAATTTTTGTCTACTCCTTAACCTC--GCAC    588
                      |||    |..||| ||||..|||||||||||.||.|||||.||  .||.
RBAM_021180__    546 -TGA----ACGGCAGGCGCTTATTTTTGTCTATTCTTTAACTTCATTCAA    590

BSNT_03427___    589 CATCGGATCGGTTATACTAGCAGGCAGCTTGCTGATAC-GCTGAAAGAAG    637
                     ||  |.|||||..|.||.|..|.|||||||||| .|.| ||||||.||||
RBAM_021180__    591 CA--GAATCGGCAAAACGAATAAGCAGCTTGCT-CTCCAGCTGAACGAAG    637

BSNT_03427___    638 ACGAATGGTATGTCTATATCATGTTTTGGGCTTCGGTACATTATTTTATT    687
                     |.|||||||||||.|...||..||||||||...|||||||||||.|||||
RBAM_021180__    638 ATGAATGGTATGTGTCCGTCCAGTTTTGGGGAGCGGTACATTATGTTATT    687

BSNT_03427___    688 CATTCTCTTCCGGAGTGTGAAGAT---GCTTTGTTAAAG-GATCTCCTTT    733
                     ||.||.||||||.|.||||.|.||   |||.||    .| ||.||..|.|
RBAM_021180__    688 CAATCGCTTCCGCAATGTGCATATCCCGCTCTG----CGCGAGCTGTTGT    733

BSNT_03427___    734 CTGATGTGCACTTAGATAATGCCCTGACAGAGTCGACGAGGAAAACATGG    783
                     |.|||.||||....||.|..||.||||||.||||..|.||.|||||.|..
RBAM_021180__    734 CCGATCTGCAGGCGGAAAGCGCGCTGACACAGTCTGCCAGAAAAACCTTA    783

BSNT_03427___    784 CAGATGGTCAAACAAGGGTTTCCGATACATCGAATTGCTGAAATCAGAAA    833
                     .||.||.|..||.|||||||||||||..|.||.||.||.|...|||||||
RBAM_021180__    784 GAGCTGTTGGAAAAAGGGTTTCCGATTGAACGGATCGCCGCGGTCAGAAA    833

BSNT_03427___    834 GCTGAAAACAGCGACGATTGAAGACCACATTGTCGAGATTTCTCTCCATG    883
                     ..|.|||||.||.||.||.|||||.||.||.||.||.||.||..|.|||.
RBAM_021180__    834 TTTAAAAACCGCCACAATCGAAGATCATATCGTAGAAATATCATTGCATC    883

BSNT_03427___    884 AGCCTGCGTTTATGATTAATGATTATGTATCAGCAGAAGACCAGC---TC    930
                     |||||||.|||.|.||..|..|.|||.|.||.|.|||.||.||||   |.
RBAM_021180__    884 AGCCTGCATTTTTTATAGAACAGTATCTTTCTGAAGAGGAACAGCGTATG    933

BSNT_03427___    931 CAAATCGCAGAGTTTGCCAAAC-GGATGCGGACGAATAAAATCAAACAAA    979
                     ..||..|||   |||||.|||| |.|| |..|||||||||||.|||||.|
RBAM_021180__    934 ATAACGGCA---TTTGCAAAACAGCAT-CAAACGAATAAAATTAAACAGA    979

BSNT_03427___    980 TTCGCGACGGGCTGGAACAGCGGTTCAGCTACTTTCAAATCAGACTGGCA   1029
                     |||||||.||..||.|...|||.||||||||.||.||.|||||.|||||.
RBAM_021180__    980 TTCGCGAAGGAATGCAGATGCGCTTCAGCTATTTCCAGATCAGGCTGGCG   1029

BSNT_03427___   1030 TTGACAAAGCAGGTGCAGCAATATGACTAA   1059
                     .||.|||||..||||.|.||..||||||.|
RBAM_021180__   1030 CTGGCAAAGACGGTGAATCAGCATGACTGA   1059


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