Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03425 and RBAM_021160
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:38
# Commandline: needle
# -asequence dna-align/BSNT_03425___ypbD.1.9828.seq
# -bsequence dna-align/RBAM_021160___ypbD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03425___ypbD-RBAM_021160___ypbD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03425___ypbD-RBAM_021160___ypbD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03425___ypbD
# 2: RBAM_021160___ypbD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 626
# Identity: 413/626 (66.0%)
# Similarity: 413/626 (66.0%)
# Gaps: 94/626 (15.0%)
# Score: 1411.0
#
#
#=======================================
BSNT_03425___ 1 ATGACTGACCGTGATATGCTGAAGCAGTTATATTTGACGCAGCTACTCA- 49
|||| |||.|| || ||.||.||
RBAM_021160__ 1 ---------------ATGC---AGCTGT--------AC---GCCACCCAA 21
BSNT_03425___ 50 ----TCATCTTTGCCGCTGCTGC----AGCAGGACTGTTCTTTTTTGAGG 91
||||.||.||.|.|.|.|| |.| ||..|.|||||||||...|
RBAM_021160__ 22 TTGCTCATATTGGCGGTTTCAGCTGTTATC-GGCTTTTTCTTTTTTACCG 70
BSNT_03425___ 92 ATGTACGGGACGTATTAAAGCTCTGGGACATTCGCGATATGCGA----AT 137
|..|.|..||..|.|||||.||.|||.|.||.||.|| ||| ||
RBAM_021160__ 71 ACATTCACGATTTTTTAAAACTGTGGCATATACGTGA----CGATAATAT 116
BSNT_03425___ 138 CATCTGGTATGGTGTTTCTATAGCTGTTATTGTTATTTTAGCCGATATGG 187
|||.|||||.|||||..||.|.||.||..||||.|||||.||||||.|||
RBAM_021160__ 117 CATATGGTACGGTGTAACTCTTGCCGTCCTTGTCATTTTTGCCGATCTGG 166
BSNT_03425___ 188 CAGTAATGAAATGGTTTCCGTCTCATTTATATGATGACGGCGGAATCAAT 237
|.||.||||||||||.|||.||.||||||||||||||||||||.||.|||
RBAM_021160__ 167 CGGTGATGAAATGGTGTCCTTCGCATTTATATGATGACGGCGGCATTAAT 216
BSNT_03425___ 238 AAAAAAATATTCAG-----TAAG---AGGTCAATCCCTCATATTATATTT 279
.|||| | |||| |||.|..|.|..||.|||.|.|||
RBAM_021160__ 217 ------GTATT--GCTTTTTAAGAACAGGCCGGTTCTGCACATTTTGTTT 258
BSNT_03425___ 280 TTAACGCTTCTGATTGCTTTC-GCGGAAGAAATGTTATTCAGAGGAGTGC 328
||.||||||||.|||.|.||| || |||||.||.||.||||||||.||.|
RBAM_021160__ 259 TTGACGCTTCTCATTTCGTTCAGC-GAAGAGATTTTGTTCAGAGGCGTTC 307
BSNT_03425___ 329 TGCAGACTCATATCGGTTTATGGGCGGCCAGCCTTATATTTGCCGCTCTG 378
||||.||.||||||||.||||||||.||||||.|.||.|||.|||..||.
RBAM_021160__ 308 TGCAAACACATATCGGCTTATGGGCCGCCAGCTTCATTTTTACCGTGCTT 357
BSNT_03425___ 379 CACTTTC-GGTATTTGTCAAAATGGCTGTTATTTATTATGGTGACAGCAA 427
|| |||| |.||.|||.|.||.|||||..|.|||||.|||||..|.|..|
RBAM_021160__ 358 CA-TTTCAGATACTTGGCGAAGTGGCTTCTGTTTATGATGGTTGCGGGCA 406
BSNT_03425___ 428 TCAGCTTTTTGCTCGGTCTGATGTATGAATGGACCGGCAACTTATTTGTT 477
||||..|||||||.||.||.||.|||||||||||||||||.|||||.|||
RBAM_021160__ 407 TCAGTCTTTTGCTGGGGCTTATCTATGAATGGACCGGCAATTTATTCGTT 456
BSNT_03425___ 478 CCGATGACGGCGCATTTTATCATTGATGCCGTGTTTGCCTGTCAGATTCG 527
|||.|.||.|||||||||||.||||||||.||.||||||||||||||.||
RBAM_021160__ 457 CCGGTTACAGCGCATTTTATTATTGATGCGGTATTTGCCTGTCAGATCCG 506
BSNT_03425___ 528 TTTTGAACATGTGAGGAGGGATAAACATGACGAACATGTCGAGAGTAGAG 577
||||.||.||||.|||||||.|...|||||||.|.|||||.|||||.||
RBAM_021160__ 507 TTTTCAATATGTTAGGAGGGGTTTGCATGACGGAAATGTCAAGAGTTGA- 555
BSNT_03425___ 578 AGAAGAAAAGCCCAGAATCTTTATGA 603
RBAM_021160__ 555 -------------------------- 555
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