Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03423 and RBAM_021140

See Amino acid alignment / Visit BSNT_03423 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:38
# Commandline: needle
#    -asequence dna-align/BSNT_03423___ypbF.1.9828.seq
#    -bsequence dna-align/RBAM_021140___ypbF.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03423___ypbF-RBAM_021140___ypbF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03423___ypbF-RBAM_021140___ypbF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03423___ypbF
# 2: RBAM_021140___ypbF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 466
# Identity:     344/466 (73.8%)
# Similarity:   344/466 (73.8%)
# Gaps:          29/466 ( 6.2%)
# Score: 1286.0
# 
#
#=======================================

BSNT_03423___      1 ATGGAATCCTTATGGAATCAGCTGGATCAGTTTACAGACGCGCCGACCAA     50
                     |||||.||.||||||||.||..|.||.|..|||.|.||||..|||||.||
RBAM_021140__      1 ATGGATTCTTTATGGAAGCAATTAGACCGATTTGCTGACGGACCGACGAA     50

BSNT_03423___     51 ACAGATGCTCCAAGCGCTTGTAAAACGAAAACAAAAATTCGAAAATTATG    100
                     |||.|||||.||.|||||.||.|||||.|||..|||||.|||||||||||
RBAM_021140__     51 ACAAATGCTTCAGGCGCTGGTGAAACGGAAATTAAAATACGAAAATTATG    100

BSNT_03423___    101 CAGCACAATGCCGCAGATGGCGATGGGCTTCACTTATCTGCCTAGGCTTA    150
                     |.|.|||||||||.|||||||..|||||.||.||..|.||       ||.
RBAM_021140__    101 CCGTACAATGCCGAAGATGGCAGTGGGCGTCCCTCGTTTG-------TTT    143

BSNT_03423___    151 TT-----ATGTG--TTATGATCATGAGCAAAAG----------CCCGGAG    183
                     ||     |||||  |..||.|.|||...|||||          |||..||
RBAM_021140__    144 TTCCCTGATGTGCATACTGCTGATGTTTAAAAGCTTTAATGCCCCCCAAG    193

BSNT_03423___    184 CCT-----CAGCTTATACTTCAAGAAATACTCAGCCATACCTTTTATTTA    228
                     |||     |||||.||.||.||.||||||.|..|||||||..||||.||.
RBAM_021140__    194 CCTCTCCGCAGCTGATTCTGCAGGAAATATTAGGCCATACGGTTTACTTG    243

BSNT_03423___    229 TTTTGGATGCTGGCAACCGCTTTTGCCTACTGCACTTCATATTATTTCAA    278
                     |..|||||..||||..||||||||||.||.||||||||.||||||||.||
RBAM_021140__    244 TGCTGGATTATGGCTTCCGCTTTTGCGTATTGCACTTCTTATTATTTTAA    293

BSNT_03423___    279 GAAAAAGGAAGAAAAATCCGAGACCGATTTCCATAAACTGAGATGTGAAA    328
                     .|||||||||||||||.|.|||...||.||.|||||||||||||||||||
RBAM_021140__    294 AAAAAAGGAAGAAAAAGCTGAGGGTGAATTTCATAAACTGAGATGTGAAA    343

BSNT_03423___    329 TTATTCAGAAAAGCACTGATCTCTGGCCGCAGCCCGATAAATGGAAGGCG    378
                     ||||.||.||||||||.|||.|.|||||.|||||.||.|||||||.||||
RBAM_021140__    344 TTATCCAAAAAAGCACGGATTTATGGCCCCAGCCTGAAAAATGGAGGGCG    393

BSNT_03423___    379 AGAGAGTCTGTTTTTCATATGATGAAGCACAAATATGACATTAATCTATA    428
                     |||||.|||||||||||..|||||||.||....|||||.||.|||||.||
RBAM_021140__    394 AGAGAATCTGTTTTTCACTTGATGAAACATCGGTATGATATCAATCTTTA    443

BSNT_03423___    429 TTTTGAAAGTAAATAA    444
                     |||||||||.||||||
RBAM_021140__    444 TTTTGAAAGCAAATAA    459


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