Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03423 and RBAM_021140
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:38
# Commandline: needle
# -asequence dna-align/BSNT_03423___ypbF.1.9828.seq
# -bsequence dna-align/RBAM_021140___ypbF.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03423___ypbF-RBAM_021140___ypbF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03423___ypbF-RBAM_021140___ypbF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03423___ypbF
# 2: RBAM_021140___ypbF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 466
# Identity: 344/466 (73.8%)
# Similarity: 344/466 (73.8%)
# Gaps: 29/466 ( 6.2%)
# Score: 1286.0
#
#
#=======================================
BSNT_03423___ 1 ATGGAATCCTTATGGAATCAGCTGGATCAGTTTACAGACGCGCCGACCAA 50
|||||.||.||||||||.||..|.||.|..|||.|.||||..|||||.||
RBAM_021140__ 1 ATGGATTCTTTATGGAAGCAATTAGACCGATTTGCTGACGGACCGACGAA 50
BSNT_03423___ 51 ACAGATGCTCCAAGCGCTTGTAAAACGAAAACAAAAATTCGAAAATTATG 100
|||.|||||.||.|||||.||.|||||.|||..|||||.|||||||||||
RBAM_021140__ 51 ACAAATGCTTCAGGCGCTGGTGAAACGGAAATTAAAATACGAAAATTATG 100
BSNT_03423___ 101 CAGCACAATGCCGCAGATGGCGATGGGCTTCACTTATCTGCCTAGGCTTA 150
|.|.|||||||||.|||||||..|||||.||.||..|.|| ||.
RBAM_021140__ 101 CCGTACAATGCCGAAGATGGCAGTGGGCGTCCCTCGTTTG-------TTT 143
BSNT_03423___ 151 TT-----ATGTG--TTATGATCATGAGCAAAAG----------CCCGGAG 183
|| ||||| |..||.|.|||...||||| |||..||
RBAM_021140__ 144 TTCCCTGATGTGCATACTGCTGATGTTTAAAAGCTTTAATGCCCCCCAAG 193
BSNT_03423___ 184 CCT-----CAGCTTATACTTCAAGAAATACTCAGCCATACCTTTTATTTA 228
||| |||||.||.||.||.||||||.|..|||||||..||||.||.
RBAM_021140__ 194 CCTCTCCGCAGCTGATTCTGCAGGAAATATTAGGCCATACGGTTTACTTG 243
BSNT_03423___ 229 TTTTGGATGCTGGCAACCGCTTTTGCCTACTGCACTTCATATTATTTCAA 278
|..|||||..||||..||||||||||.||.||||||||.||||||||.||
RBAM_021140__ 244 TGCTGGATTATGGCTTCCGCTTTTGCGTATTGCACTTCTTATTATTTTAA 293
BSNT_03423___ 279 GAAAAAGGAAGAAAAATCCGAGACCGATTTCCATAAACTGAGATGTGAAA 328
.|||||||||||||||.|.|||...||.||.|||||||||||||||||||
RBAM_021140__ 294 AAAAAAGGAAGAAAAAGCTGAGGGTGAATTTCATAAACTGAGATGTGAAA 343
BSNT_03423___ 329 TTATTCAGAAAAGCACTGATCTCTGGCCGCAGCCCGATAAATGGAAGGCG 378
||||.||.||||||||.|||.|.|||||.|||||.||.|||||||.||||
RBAM_021140__ 344 TTATCCAAAAAAGCACGGATTTATGGCCCCAGCCTGAAAAATGGAGGGCG 393
BSNT_03423___ 379 AGAGAGTCTGTTTTTCATATGATGAAGCACAAATATGACATTAATCTATA 428
|||||.|||||||||||..|||||||.||....|||||.||.|||||.||
RBAM_021140__ 394 AGAGAATCTGTTTTTCACTTGATGAAACATCGGTATGATATCAATCTTTA 443
BSNT_03423___ 429 TTTTGAAAGTAAATAA 444
|||||||||.||||||
RBAM_021140__ 444 TTTTGAAAGCAAATAA 459
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