Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03421 and RBAM_021130
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:38
# Commandline: needle
# -asequence dna-align/BSNT_03421___ypbG.1.9828.seq
# -bsequence dna-align/RBAM_021130___ypbG.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03421___ypbG-RBAM_021130___ypbG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03421___ypbG-RBAM_021130___ypbG.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03421___ypbG
# 2: RBAM_021130___ypbG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 847
# Identity: 546/847 (64.5%)
# Similarity: 546/847 (64.5%)
# Gaps: 125/847 (14.8%)
# Score: 1723.0
#
#
#=======================================
BSNT_03421___ 1 ATGAAGCTATCAGTGAAAATTGCCGGTGTACTAACTGTTGCGGCAGCGGC 50
||||||||..|||.|..||||..||| ||.|.|| ||||.||||||
RBAM_021130__ 1 ATGAAGCTTACAGCGGGAATTCTCGG----CTCATTG--GCGGGAGCGGC 44
BSNT_03421___ 51 ------AATGACGGCAAAAATGTATGCAACAGCAAAAGGCAATCATTTGA 94
.|||.||||....|||||...|||.|||||.||||..|||.|||
RBAM_021130__ 45 TGCGGTTATGGCGGCCGTTATGTACAAAACGGCAAACGGCAGCCATCTGA 94
BSNT_03421___ 95 AGACACATACGTTT--CCTTTATCAAAGATGAAGGGCAAGCCGCCTCTGA 142
|.||||||||.||| .|||.|| ||.||||||||.|.|..|||.||.|
RBAM_021130__ 95 AAACACATACATTTACGCTTGAT--AAAATGAAGGGGATGAAGCCGCTCA 142
BSNT_03421___ 143 CAATCTTTTTTATTTCAGACATTCACAAACGTCTCATCGATCAAGACCTT 192
|.|||||||||||.||.|||.|.|||...|||.|.||.|||.||.|.|||
RBAM_021130__ 143 CCATCTTTTTTATATCTGACGTGCACCGCCGTTTAATTGATGAAAAGCTT 192
BSNT_03421___ 193 TTAGAAAAAGCGCGAAGC--CATGCCCCCCACTTGGTTATAA-------- 232
.| .|||||||| || ||||||||
RBAM_021130__ 193 CT-------CCGCGAAGCGGCA------------GGTTATAAGCCGGATG 223
BSNT_03421___ 233 ---------TCGGCGGTGATTTAGCTGAGGGCGGGGTGCCCAGTGCGAGA 273
|||||||||||||.||.||||||||.||.||....||.|||
RBAM_021130__ 224 CCGTTTTGCTCGGCGGTGATTTGGCGGAGGGCGGAGTTCCTTACGCCAGA 273
BSNT_03421___ 274 ATCGAGGAAAACATCAAAAGGCTCGTACATTTCGGGGTC-----CCTATC 318
||.||.||||||||.|||.| ||.||| ||.|| |||.||
RBAM_021130__ 274 ATTGAAGAAAACATTAAACG--TCTTAC------GGCTCTTGCGCCTGTC 315
BSNT_03421___ 319 GTGTTTGTGTGGGGGAATAATGATTATGAAGTCAGGCAGCATAAGCTGTA 368
.|||.|||||||||.|||||||||||.||.|||||.|||||.||.|||..
RBAM_021130__ 316 ATGTATGTGTGGGGAAATAATGATTACGAGGTCAGCCAGCAAAAACTGCT 365
BSNT_03421___ 369 TTC-----------CATATTTAAAGCGCACGGCATCATCACTCTGAGAAA 407
.|| |||| ||||| |.|||.|.||||||||
RBAM_021130__ 366 CTCTCTTTTACGGGCATA--TAAAG---------TGATCCCGCTGAGAAA 404
BSNT_03421___ 408 TGAGTCAGTCCCGTTTTCATACAATGGGCATACGATTGCGAT-TGCGGGG 456
|||.||.||.|.||||.|.||.||.|||.|.||..||.|||| ||| |||
RBAM_021130__ 405 TGAATCGGTTCAGTTTGCTTATAAAGGGGAAACCGTTACGATCTGC-GGG 453
BSNT_03421___ 457 GTTGATGATATCAGGATGGAGATGGATCATTATGAGGAAGCCATCAAAGA 506
||.|||||||||||||||..|||||||.||||.||....||.||||.|.|
RBAM_021130__ 454 GTGGATGATATCAGGATGATGATGGATGATTACGAATCTGCAATCAGATA 503
BSNT_03421___ 507 -ACTTGATG-----AAAGCCAGCTGAATATTCTGGTTTGCCATAATCCGG 550
|| .|||| |||| |.||..|.|||.||||||||||.||||
RBAM_021130__ 504 TAC-GGATGCTGACAAAG-----TAAACCTCCTGCTTTGCCATAACCCGG 547
BSNT_03421___ 551 AGATTCATGAACAAATCAATGAAGATGACGGTATTGA---TGTGATACTC 597
|.||.|||||.||.||.|..||....|||||.||||| |||| .||
RBAM_021130__ 548 ACATCCATGAGCAGATGAGGGAGTCAGACGGGATTGACGCTGTG---TTC 594
BSNT_03421___ 598 AGCGGACATACCCATGGAGGCCAGATCAGGTTTGGAAAATTCGGCCCTTA 647
|||||.|||||.|||||.|||||.|||.|.||.|||...|||||.||.||
RBAM_021130__ 595 AGCGGCCATACGCATGGCGGCCAAATCCGTTTCGGACGGTTCGGGCCGTA 644
BSNT_03421___ 648 TGAACTGGGGAAAACAGGTATTGTTAAAAACGCGGCA-TATCTAATCAGC 696
.|||.||||....||.||.|..||.|||||.|| ||| ||.||.||||||
RBAM_021130__ 645 CGAATTGGGCGGGACGGGAACGGTAAAAAAAGC-GCATTACCTGATCAGC 693
BSNT_03421___ 697 AACGGCTACGGCACGACAAAAGTGCCTCTTCGTTTAGGTGCTGAGCCTGA 746
|||||||||||.|||||||||||.||.||..|..|.||.||..|.||.||
RBAM_021130__ 694 AACGGCTACGGGACGACAAAAGTTCCGCTGAGGCTCGGGGCGAAACCGGA 743
BSNT_03421___ 747 AACTCACATTGTGACTCTTTGCGGGCCAGAATAA------------- 780
.||.||.||..|.||.||.|||||.|| |.||.|
RBAM_021130__ 744 GACGCATATGATTACGCTGTGCGGACC-GGATGAGCCGTCTTCCTGA 789
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