Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03420 and RBAM_021120

See Amino acid alignment / Visit BSNT_03420 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:38
# Commandline: needle
#    -asequence dna-align/BSNT_03420___ypbH.1.9828.seq
#    -bsequence dna-align/RBAM_021120___mecB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03420___ypbH-RBAM_021120___mecB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03420___ypbH-RBAM_021120___mecB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03420___ypbH
# 2: RBAM_021120___mecB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 587
# Identity:     491/587 (83.6%)
# Similarity:   491/587 (83.6%)
# Gaps:           4/587 ( 0.7%)
# Score: 2066.0
# 
#
#=======================================

BSNT_03420___      1 ATGCGGCTTGAGCGTCTGAATTATAATAAGATCAAAATCTTTTTAACCCT     50
                     ||||||||||||||||||||.|||||||||||.|||||||||||||||||
RBAM_021120__      1 ATGCGGCTTGAGCGTCTGAACTATAATAAGATTAAAATCTTTTTAACCCT     50

BSNT_03420___     51 CGATGATTTGACAGACCGGGGATTGACAAAAGAAGACCTCTGGAAGGACT    100
                     |||.|||.||||.||.||||||.|||||||||||||||||||||||||||
RBAM_021120__     51 CGACGATCTGACTGATCGGGGACTGACAAAAGAAGACCTCTGGAAGGACT    100

BSNT_03420___    101 CATTTAAAGTCCACCAGTTATTTAAAGATATGATGAATGAAGCAAATACA    150
                     |.||||||||||||||||||||||||||||||||||||||||||||||||
RBAM_021120__    101 CGTTTAAAGTCCACCAGTTATTTAAAGATATGATGAATGAAGCAAATACA    150

BSNT_03420___    151 GAGCTCGGCTTTGAAGCGAATGGACCGATTGCAGTGGAAGTGTATTCTCT    200
                     |||||||||||||||||||||||.|||||.||.||||||||.||||||||
RBAM_021120__    151 GAGCTCGGCTTTGAAGCGAATGGTCCGATCGCGGTGGAAGTATATTCTCT    200

BSNT_03420___    201 CCAAGCACAAGGGATGGTCGTGATTGTAACAAAGAACCAAGACGCCGATT    250
                     .||.||||||||.|||||.|||||||||||.||.||.||.|||||.||..
RBAM_021120__    201 TCAGGCACAAGGCATGGTTGTGATTGTAACGAAAAATCATGACGCGGACG    250

BSNT_03420___    251 CAGAAGACGATGAGTATGATGATGATTACATCGAAATGCAAGTCAAGCTT    300
                     |||||||.||.||.|||||.||||||||||||||.|||||.|||||.|||
RBAM_021120__    251 CAGAAGATGACGAATATGACGATGATTACATCGAGATGCAGGTCAAACTT    300

BSNT_03420___    301 GATGAAAGCGCGGACATCATATATCAATTCCATTCCTTTGAAGATATCAT    350
                     ||.||||||.||||.||.||.|||||.||||||||.||||||||||||||
RBAM_021120__    301 GACGAAAGCCCGGATATTATTTATCAGTTCCATTCGTTTGAAGATATCAT    350

BSNT_03420___    351 TCAGCTTTCAGAAAGCTTACAGCGAATCGGTATCACAGGGGGAACTGTCT    400
                     |||||||.|.|.||||.|.||.||||||||.||.||.||.||.||.||||
RBAM_021120__    351 TCAGCTTGCCGGAAGCCTTCACCGAATCGGGATTACCGGCGGCACCGTCT    400

BSNT_03420___    401 ACCACTATGACGGGCAGTACTTTTTAAGCCTTGAAGATCTAGGGTCACAT    450
                     ||||||||||....||.||||.|.|||||||||||||.||.||.||.|..
RBAM_021120__    401 ACCACTATGAGAACCAATACTATGTAAGCCTTGAAGACCTCGGCTCCCGG    450

BSNT_03420___    451 ACGGCTGAAGGGGTTGTGGCGGTTCTGGCTGAATACGGCAATCCGACAAC    500
                     .|.||.|||||.||..|.|||||.||||||||||||||..|.|||.|.||
RBAM_021120__    451 TCCGCCGAAGGCGTCATCGCGGTGCTGGCTGAATACGGACACCCGGCGAC    500

BSNT_03420___    501 TTTAACGATTTATCGCCTGCAAGAGTATGGTAAGCTCATTATGGACGGTA    550
                     ..|.||||||||..|.||.||.|||||.||.||.|||||.||||||||.|
RBAM_021120__    501 GATTACGATTTACAGGCTCCATGAGTACGGAAAACTCATCATGGACGGCA    550

BSNT_03420___    551 ATGCCGTAGAAACGAT--ACAAACTCATTTTTCATAA    585
                     ||||.||.||.||.||  |||||  ||||||||||||
RBAM_021120__    551 ATGCTGTGGAGACCATCCACAAA--CATTTTTCATAA    585


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