Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03412 and RBAM_021080

See Amino acid alignment / Visit BSNT_03412 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:38
# Commandline: needle
#    -asequence dna-align/BSNT_03412___sleB.1.9828.seq
#    -bsequence dna-align/RBAM_021080___sleB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03412___sleB-RBAM_021080___sleB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03412___sleB-RBAM_021080___sleB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03412___sleB
# 2: RBAM_021080___sleB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 943
# Identity:     664/943 (70.4%)
# Similarity:   664/943 (70.4%)
# Gaps:          98/943 (10.4%)
# Score: 2385.5
# 
#
#=======================================

BSNT_03412___      1 ATGAAGTCCAAAGGATCGATTATGGCATGTCTCATCCTTTTTTCCTTTAC     50
                     |||||||.|||||||.|..||||||||||||||||.||.|||||.||   
RBAM_021080__      1 ATGAAGTGCAAAGGAGCCTTTATGGCATGTCTCATTCTATTTTCTTT---     47

BSNT_03412___     51 AATAACGACG-----TTTTTCAATAC----TGAAACCATCTC-TGCCTTT     90
                          ||.||     ||.|||.|| |    ||||||..| || |||.|||
RBAM_021080__     48 -----CGCCGCTGCTTTCTTCGAT-CATCATGAAACGGT-TCATGCGTTT     90

BSNT_03412___     91 TCGAATCAGGTCATTCAAAGAGGGGCAACCGGGGACGATGTGGTCGAACT    140
                     ||.|||||.||.|||||||||||.||.||.||.||.|||||..|.|||.|
RBAM_021080__     91 TCAAATCAAGTGATTCAAAGAGGCGCGACGGGTGATGATGTTATAGAATT    140

BSNT_03412___    141 TCAGGCGCGTCTTCAATACAACGGATATTATAACGGAAAAATTGACGGGG    190
                     .|||||.|||||||||||.|||||||.|||||||||.|||||.||.||.|
RBAM_021080__    141 GCAGGCCCGTCTTCAATATAACGGATTTTATAACGGGAAAATCGATGGTG    190

BSNT_03412___    191 TTTATGGATGGGGGACGTACTGGGCAGTTCGGAATTTTCAGGATCAATTC    240
                     ||||.||.|||...||.||||||||.||..|.|||||||||||..|||||
RBAM_021080__    191 TTTACGGCTGGACCACATACTGGGCCGTGAGAAATTTTCAGGAGAAATTC    240

BSNT_03412___    241 GGGTTAAAAGAGGTTGACGGCCTTGTAGGAGCTAAAACAAAGCAAAC---    287
                     ||..|.||...||||||||||||.||.||.||.|||||    |||||   
RBAM_021080__    241 GGCATGAAGCCGGTTGACGGCCTCGTCGGCGCGAAAAC----CAAACAGG    286

BSNT_03412___    288 --CTTAATATGTAAATCAAAATACTATCGTGAATATGTCATGGAACAACT    335
                       | |.||.|.||||||||||||.||.|||||||||||.|||||.||..|
RBAM_021080__    287 TGC-TGATTTCTAAATCAAAATATTACCGTGAATATGTAATGGAGCAGAT    335

BSNT_03412___    336 CAATAAAGGGAATACATTCACGCATTACGGAAAAATTCCGCTAAAGTATC    385
                     |.|.|||||||||||.|||||.|||||.||.||..|.||..|.||..|.|
RBAM_021080__    336 CCAAAAAGGGAATACGTTCACTCATTATGGCAACGTCCCATTGAAAAACC    385

BSNT_03412___    386 AGACGAAACCATCAAAAGCAGCAACACAAAAGGCAAGACAACAAGCAGAA    435
                     |.||.||||   |.|.|||.|.|||                   ||||||
RBAM_021080__    386 AAACAAAAC---CGAGAGCCGGAAC-------------------GCAGAA    413

BSNT_03412___    436 GCACGGCAGAAAC-----AGCCTGCGGAAAAAACAACGCAGCAGCCTAAA    480
                     || ||||.|.|||     |||||||..|||            ||||    
RBAM_021080__    414 GC-CGGCGGGAACGAATAAGCCTGCTCAAA------------AGCC----    446

BSNT_03412___    481 GCGAATGCGAATAAACAGCAAAACAATACA-----CCAGCAAAAGCAAGA    525
                                      |||||||||.|||     .|||..|||.||  |
RBAM_021080__    447 -----------------GCAAAACAAAACAGGCGGTCAGTCAAATCA--A    477

BSNT_03412___    526 AAACAGGATGCGGTAGCAGCGAACATGCCTGGTGGATTTTCCAACAACGA    575
                     ||.||..||.||..|||.||.||.||||||||.||.||.||.||||||||
RBAM_021080__    478 AAGCAAAATACGACAGCGGCCAATATGCCTGGCGGTTTCTCAAACAACGA    527

BSNT_03412___    576 TATCAGGCTGCTTGCTCAAGCGGTTTATGGCGAAGCCCGGGGCGAGCCGT    625
                     .||||..||.||.||.||.||.||.||.||.|||||.||.||.|||||||
RBAM_021080__    528 CATCAATCTTCTGGCACAGGCTGTGTACGGGGAAGCGCGCGGTGAGCCGT    577

BSNT_03412___    626 ACGAGGGACAGGTTGCTATTGCAGCAGTCATTTTAAACCGTTTGAACAGC    675
                     ..||.||.||||||||.||.||.||.||.||||||||||||.|.||.|||
RBAM_021080__    578 TTGAAGGGCAGGTTGCCATCGCCGCGGTTATTTTAAACCGTATTAAAAGC    627

BSNT_03412___    676 CCGTTATTTCCAAATTCAGTAGCGGGGGTTATTTTTGAGCCGCTTGCCTT    725
                     |||||||||||.|||.|.||.||.||.||.|||||.||.|||||.||.||
RBAM_021080__    628 CCGTTATTTCCGAATACGGTGGCCGGCGTCATTTTCGAACCGCTCGCGTT    677

BSNT_03412___    726 CACAGCAGTAGCCGACGGACAAATTTACATGCAGCCGAATGAAACGGCAC    775
                     .||.||.||.||||||||.|||||.||.||||||||||||||||..|||.
RBAM_021080__    678 TACCGCCGTTGCCGACGGCCAAATATATATGCAGCCGAATGAAAGAGCAA    727

BSNT_03412___    776 GAGAAGCAGTGCTGGATGCCATCAATGGCTGGGACCCATCAGAGGAAGCA    825
                     .||||||.||.||.|||||.|||||.||||||||.||.||.||..|.||.
RBAM_021080__    728 AAGAAGCGGTTCTTGATGCGATCAACGGCTGGGATCCTTCTGAAAACGCC    777

BSNT_03412___    826 CTTTACTACTTTAATCCGGATACGGCTACAAGTCCGTGGATTTGGGGGCG    875
                     .||||.||.||.|||||.||||||||.|||||....|||||||||||.||
RBAM_021080__    778 ATTTATTATTTCAATCCTGATACGGCGACAAGCAAATGGATTTGGGGACG    827

BSNT_03412___    876 TCCGCAGATTAAAAGAATCGGTAAACACATTTTCTGTGAGTAG    918
                     |||||||||||||||||||||.||.|||||||||||||||||.
RBAM_021080__    828 TCCGCAGATTAAAAGAATCGGAAAGCACATTTTCTGTGAGTAA    870


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_03412 and RBAM_021080

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
