Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03403 and RBAM_021020
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:37
# Commandline: needle
# -asequence dna-align/BSNT_03403___ypgA.1.9828.seq
# -bsequence dna-align/RBAM_021020___fni.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03403___ypgA-RBAM_021020___fni.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03403___ypgA-RBAM_021020___fni.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03403___ypgA
# 2: RBAM_021020___fni
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1074
# Identity: 784/1074 (73.0%)
# Similarity: 784/1074 (73.0%)
# Gaps: 48/1074 ( 4.5%)
# Score: 2719.0
#
#
#=======================================
BSNT_03403___ 1 GTGACTCGAGCAGAACGAAAAAGACAACACATCAATCATGCCTTGTCCAC 50
|||||.||||||||||||||||||.||||.||.||||||||..||||.||
RBAM_021020__ 1 GTGACACGAGCAGAACGAAAAAGAGAACATATAAATCATGCGCTGTCTAC 50
BSNT_03403___ 51 CGGCCAGAAGCGGGAAACAGGTCTTGATGATATTACGTTTGTTCACGTCA 100
||||||.||.||||||||.||.|||||||||||||||||||||||.||||
RBAM_021020__ 51 CGGCCAAAACCGGGAAACGGGGCTTGATGATATTACGTTTGTTCATGTCA 100
BSNT_03403___ 101 GTCTGCCCGATCTTGCATTAGAACAAGTAGATATTTCCACGAAAATCGGC 150
|.||.||..|.||.|||||.|||.||||.|||||.||.||||||||||||
RBAM_021020__ 101 GCCTACCGAACCTAGCATTGGAAAAAGTGGATATATCAACGAAAATCGGC 150
BSNT_03403___ 151 GAACTTTCAAGCAGTTCGCCGATTTTTATCAATGCAATGACTGGCGGCGG 200
|.|||..||||||||||||||||||||||||||||.|||||.||||||||
RBAM_021020__ 151 GGACTCACAAGCAGTTCGCCGATTTTTATCAATGCGATGACAGGCGGCGG 200
BSNT_03403___ 201 CGGAAAACTTACATATGAGATTAATAAATCGCTTGCGCGAGCGGCTTATC 250
||||.|.||||||||.||.|||||.|.||||||.||..||||.||.....
RBAM_021020__ 201 CGGACAGCTTACATACGAAATTAACAGATCGCTGGCAAGAGCTGCGCGCA 250
BSNT_03403___ 251 AGGCTGGAATTCCCCTTGCTGTGGGATCGCAAATGTCAGCATTAAAAGAT 300
|.||.||.||.||.||.|||||.||.||||||||||||||.|||||||||
RBAM_021020__ 251 AAGCCGGCATGCCGCTGGCTGTCGGTTCGCAAATGTCAGCTTTAAAAGAT 300
BSNT_03403___ 301 CCATCAGAGC-GTCTATCCTATGAAATTGTTCGAAAGGAAAACCCAAACG 349
||.||.||.| ||.| ||.|||||.||.||..||||.||.||.||..|||
RBAM_021020__ 301 CCCTCCGAACGGTGT-TCTTATGAGATCGTCAGAAAAGAGAATCCGGACG 349
BSNT_03403___ 350 GGCTGATTTTTGCCAACCTGGGAAGCGAGGCAACGGCTGC---TCAGGCA 396
|||||||.||||||||..|.||.||||||| |||.||| .|||||.
RBAM_021020__ 350 GGCTGATATTTGCCAATTTAGGCAGCGAGG---CGGATGCCGAGCAGGCG 396
BSNT_03403___ 397 AAGGAA--GCTGTTGAGATGATTGGAGCAAACGCACTGCAGATCCACCTC 444
|| || ||.|||||.||||||..||||.||||.||.|||||.||..|.
RBAM_021020__ 397 AA--AATGGCAGTTGATATGATTCAAGCAGACGCCCTCCAGATTCATTTA 444
BSNT_03403___ 445 AATGTGATTCAGGAAATTGTGATGCCTGAAGGAGACAGAAGCTTTAGCGG 494
||||||||||||||.||.||.|||||.||.||.|||||||||||||..||
RBAM_021020__ 445 AATGTGATTCAGGAGATCGTCATGCCAGAGGGTGACAGAAGCTTTACTGG 494
BSNT_03403___ 495 CGCACTGGAACGTATTGAACAAATT--TGCAGTCATGTCAGTGTACCAGT 542
|||.||.|..||||||||.|..||| .||.| |.|...|.||.||.||
RBAM_021020__ 495 CGCTCTCGGCCGTATTGAGCGGATTGCGGCGG--AAGCGGGAGTTCCCGT 542
BSNT_03403___ 543 CATTGTGAAAGAAGTCGGATTCGGTATGAGCAAAGAATCAGCAGGAAAGC 592
..||||.|||||||||||.|||||.|||||||..|||||.|||.|..||.
RBAM_021020__ 543 TTTTGTCAAAGAAGTCGGCTTCGGAATGAGCAGGGAATCGGCACGGCAGT 592
BSNT_03403___ 593 TGTATGAAGCTGGTGCTGCAGCTGTTGACATTGGCGGTTACGGAGGGACA 642
|.|.|||.|||||.||.|||||.|||||....|||||.|||||.||.|||
RBAM_021020__ 593 TATTTGATGCTGGCGCAGCAGCAGTTGATGCCGGCGGATACGGCGGTACA 642
BSNT_03403___ 643 AATTTCTCGAAAATCGAAAATCTCCGAAGACA----GCGGAAAATCTCC- 687
||||||||.||.|||||||||.|.||.|||.| ||| ||.|
RBAM_021020__ 643 AATTTCTCTAAGATCGAAAATATGCGCAGAGAGAAGGCG------CTTCA 686
BSNT_03403___ 688 -TTTTTTAACTCGTGGGGCATTTCGACAGCTGCCAGTTTGGCGGAAATC- 735
||||||||..|||||||.|||||.||.||.||.||.||.|||||||||
RBAM_021020__ 687 ATTTTTTAATACGTGGGGAATTTCCACTGCCGCAAGCTTAGCGGAAATCC 736
BSNT_03403___ 736 ---CGCTCTGAGTTTCCTG--CAAGCACCATGATCGCCTCTGGCGGTCTG 780
||||||..| ||| |||.|| ||.|||||.||.|||||.|||
RBAM_021020__ 737 ACTCGCTCTCCG----CTGATCAATCA--ATTATCGCATCCGGCGGGCTG 780
BSNT_03403___ 781 CAAGATGCACTTGACGTGGCAAAGGCAATTGCGCTTGGGGCCTCTTGCAC 830
|||..|||.||.||.||.||.||..|.|||||.||.||.||.||..||.|
RBAM_021020__ 781 CAAAGTGCCCTGGATGTCGCCAAATCGATTGCCCTCGGCGCTTCCGGCGC 830
BSNT_03403___ 831 CGGAATGGCAGGGCA-TTTTTTAAAAGCGCTGACTGACAGTGGTGAGGAA 879
.|||||||| ||||| |||..|.|||||.||.||....|..||.||.||.
RBAM_021020__ 831 GGGAATGGC-GGGCACTTTCCTGAAAGCTCTCACCTCTAAAGGAGAAGAG 879
BSNT_03403___ 880 GGACTGCTTGAGGAGAT-TCAGCTGATCCTTG-AGGAATTAAAGATGATT 927
||.|||.||||.||||| .|.||...| ||| |.||..|.||.||||||
RBAM_021020__ 880 GGCCTGTTTGACGAGATGACGGCGCTT--TTGCAAGAGCTGAAAATGATT 927
BSNT_03403___ 928 ATGACCGTGCT-GGGCGCCAGAACGATTGACGATTTACAAAAGGCGCCCC 976
|||||||..|| ||..|||| |.||.||..|.|..|.|||||||||||..
RBAM_021020__ 928 ATGACCGCCCTCGGATGCCA-ATCGGTTTCCCAACTGCAAAAGGCGCCTT 976
BSNT_03403___ 977 TTGTGATCAAAGGTGAAACCCATCATTGGCTCACAGAGAGAGGGATCAAT 1026
|.||.||.||||||||.||.|||||.|||||..|.||..|.||.||..|.
RBAM_021020__ 977 TGGTCATAAAAGGTGACACACATCACTGGCTTTCTGAACGGGGAATTGAC 1026
BSNT_03403___ 1027 ACATCAAGCTATAGTGTGCGATAA 1050
|||||..|.|..||....||.|||
RBAM_021020__ 1027 ACATCCCGTTTCAGCAGACGTTAA 1050
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