Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03399 and RBAM_021010
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:37
# Commandline: needle
# -asequence dna-align/BSNT_03399___yphA.1.9828.seq
# -bsequence dna-align/RBAM_021010___yphA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03399___yphA-RBAM_021010___yphA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03399___yphA-RBAM_021010___yphA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03399___yphA
# 2: RBAM_021010___yphA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 631
# Identity: 442/631 (70.0%)
# Similarity: 442/631 (70.0%)
# Gaps: 59/631 ( 9.4%)
# Score: 1413.5
#
#
#=======================================
BSNT_03399___ 1 ATGGAACAATTTTATTACTATTGGTCAATGTGGTTTCTGTGGGTTCTGAC 50
|||||||..||||||||.||.|||||||||||||||.|.|||.|.||..|
RBAM_021010__ 1 ATGGAACCGTTTTATTATTACTGGTCAATGTGGTTTTTATGGATACTTGC 50
BSNT_03399___ 51 AACATTTATTTTTGAAAAGACGAAAAGACGAATTGCCGTCTCTGTCTTTA 100
.||.||||||||||..||.||||||||.||..||..|||.||.|||||||
RBAM_021010__ 51 GACTTTTATTTTTGCCAAAACGAAAAGCCGTTTTTACGTATCAGTCTTTA 100
BSNT_03399___ 101 TTTTAACTAATATTATTCTAAGCATACATGACAT---CGCTTTATATTTT 147
||||.||||||||.||...||||||||||.|.|| .||| ||||||
RBAM_021010__ 101 TTTTGACTAATATGATGGCAAGCATACATCAGATTACGGCT---TATTTT 147
BSNT_03399___ 148 TCCCTGAATGTTGCATATTTGATGTTTTTCGTTTGCGG-ATGTGTCTATG 196
.|.|||||||..||||||.|.||||||||.| .||||| ||.|||.||||
RBAM_021010__ 148 ACGCTGAATGCGGCATATGTCATGTTTTTTG-CTGCGGCATTTGTTTATG 196
BSNT_03399___ 197 CCGGGTA-TTTGGGAATGTAT---CGTTTTCGTTACATCATGGTCTATCT 242
||||.| ..|.||.|||.|| ||..|.|||.|.||..||.|..||||
RBAM_021010__ 197 -CGGGAAGCCTCGGCATGCATAAACGGCTCCGTAATATTGTGATTCATCT 245
BSNT_03399___ 243 GACGCTCGTTGCCGCGTATGCGTTTGTTTATCTTTTTGCATTATATGACC 292
||||...|.|||.|||||.|..|||.|||.||||||||||||||||||.|
RBAM_021010__ 246 GACGGCGGCTGCGGCGTACGGCTTTATTTTTCTTTTTGCATTATATGATC 295
BSNT_03399___ 293 CGGTTTGGTTCATCATAAAACCTGAGTGGGCTGCTGTTATATTAATAGTG 342
|.||||||||.||||||||||||||.|||||.||.||| |||.||
RBAM_021010__ 296 CTGTTTGGTTTATCATAAAACCTGAATGGGCGGCGGTT------ATACTG 339
BSNT_03399___ 343 CTT----TTA--ACAGC-TTCTGTTGAAAGGAATTT---TGAGAAGCAGC 382
||| ||| || || |||.|||||..||...|| |||||.|| .
RBAM_021010__ 340 CTTACCGTTATTAC-GCTTTCCGTTGAGGGGCGGTTCCCTGAGAGGC--T 386
BSNT_03399___ 383 TTGTCTTATTTGTCCTAGGGATGTGCCAAGGCGAACTGGTGTATTCATTT 432
||||||| |||||.||.||.||||||||.||.||.||..|||||.|....
RBAM_021010__ 387 TTGTCTT-TTTGTTCTCGGCATGTGCCAGGGGGAGCTATTGTATGCTGCG 435
BSNT_03399___ 433 GTGATCCAGAAGTTGGCCGGGGCTATGGCTGTCGGCGGCTT-TCAATGGC 481
||.||||..||..|.||.||.|||...||.||||| ||.|| |.||||||
RBAM_021010__ 436 GTCATCCGCAATATTGCGGGTGCTGCAGCCGTCGG-GGATTATAAATGGC 484
BSNT_03399___ 482 -TGAATGCGTGTTCTGCGGGAATGATATTGCT-GTTTGGCATATCTAAAT 529
|..|.|| |||||.||||||.||||..|.|| ||..||| |..|||.||
RBAM_021010__ 485 TTTCAGGC-TGTTCGGCGGGAGTGATTCTTCTCGTCGGGC-TGACTACAT 532
BSNT_03399___ 530 ACGAACACCT-------CGCA--AGCCAGATTGGTCAGAAAAGCAAAAGA 570
|.|||||.|| |||| ||| ||.|||||||||| |
RBAM_021010__ 533 ATGAACAGCTTGCGGCGCGCATCAGC---------CAAAAAAGCAAAA-A 572
BSNT_03399___ 571 TCA-AACAAAGGAGCTACCAAAATGTCATGA 600
.|| ..|||||||||.||.||||||||.|||
RBAM_021010__ 573 GCAGGGCAAAGGAGCGACAAAAATGTCTTGA 603
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