Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03395 and RBAM_021000
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:37
# Commandline: needle
# -asequence dna-align/BSNT_03395___engA.1.9828.seq
# -bsequence dna-align/RBAM_021000___engA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03395___engA-RBAM_021000___engA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03395___engA-RBAM_021000___engA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03395___engA
# 2: RBAM_021000___engA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1313
# Identity: 1112/1313 (84.7%)
# Similarity: 1112/1313 (84.7%)
# Gaps: 4/1313 ( 0.3%)
# Score: 4732.0
#
#
#=======================================
BSNT_03395___ 1 ATGGGTAAACCTGTCGTAGCCATTGTCGGGAGACCAAATGTAGGAAAATC 50
|||||||||||||||||||||||||||||.|||||.|||||.||||||||
RBAM_021000__ 1 ATGGGTAAACCTGTCGTAGCCATTGTCGGAAGACCGAATGTGGGAAAATC 50
BSNT_03395___ 51 CACAATCTTTAACCGGATTGCGGGAGAAAGAATTTCAATAGTAGAAGATA 100
||||||||||||||||||||||||.|||||||||||||||||||||||||
RBAM_021000__ 51 CACAATCTTTAACCGGATTGCGGGTGAAAGAATTTCAATAGTAGAAGATA 100
BSNT_03395___ 101 CCCCTGGCGTGACAAGGGATCGGATATACAGCTCGGCTGAATGGCTGAAT 150
||||.||.|||||..||||.|||||||||||.|||||.||||||||||||
RBAM_021000__ 101 CCCCCGGAGTGACGCGGGACCGGATATACAGTTCGGCGGAATGGCTGAAT 150
BSNT_03395___ 151 TATGATTTTAATTTGATTGATACGGGCGGTATTGATATCGGTGATGAGCC 200
|||||||||||..||||||||||||||||.|||||||||||.||.||.||
RBAM_021000__ 151 TATGATTTTAACCTGATTGATACGGGCGGAATTGATATCGGAGACGAACC 200
BSNT_03395___ 201 G-TTCTTAGCGCAGATTCGCCAGCAGGCTGAAATCGCCATGGATGAAGCG 249
| ||||.| |.|||||.||||||||||||||||||||||||||.||.||.
RBAM_021000__ 201 GTTTCTGA-CACAGATCCGCCAGCAGGCTGAAATCGCCATGGACGAGGCT 249
BSNT_03395___ 250 GACGTGATTATTTTTATGGTGAACGGCCGTGAAGGTGTGACAGCTGCTGA 299
||.|||||.||.|||||||||||||||||.||||||||.||..||||.||
RBAM_021000__ 250 GATGTGATCATCTTTATGGTGAACGGCCGCGAAGGTGTTACGTCTGCGGA 299
BSNT_03395___ 300 TGAAGAAGTGGCGAAAATTTTGTACCGCACAAAAAAGCCTGTTGTTTTAG 349
||||||||||||||||||..|||||||.||.|||||.||.||.||.||||
RBAM_021000__ 300 TGAAGAAGTGGCGAAAATACTGTACCGGACGAAAAAACCGGTCGTATTAG 349
BSNT_03395___ 350 CGGTTAATAAACTGGATAACACAGAAATGAGAGCGAATATTTATGATTTT 399
|.|||||||||.|.|||||.||.||||||||||||||.||.|||||.|||
RBAM_021000__ 350 CCGTTAATAAATTAGATAATACCGAAATGAGAGCGAACATCTATGACTTT 399
BSNT_03395___ 400 TATTCGCTAGGCTTTGGCGAGCCGTATCCAATTTCGGGAACACACGGACT 449
|||.||||.||||||||.||.||||||||.||||||||.||||||||..|
RBAM_021000__ 400 TATGCGCTCGGCTTTGGAGAACCGTATCCGATTTCGGGCACACACGGTTT 449
BSNT_03395___ 450 CGGACTGGGTGATTTACTGGATGCCGTTGCAGAGCATTTTAAAAACATTC 499
.|||.||||.|||||.||.|||||...|||.|||||||||||||||||||
RBAM_021000__ 450 AGGATTGGGAGATTTGCTCGATGCTTGTGCCGAGCATTTTAAAAACATTC 499
BSNT_03395___ 500 CAGAAACGAAATACAATGAGGAAGTTGTTCAATTCTGTCTGATCGGACGT 549
|.||.|||||.||||.|||.||.||.|||||||||||.||||||||.||.
RBAM_021000__ 500 CGGAGACGAAGTACAGTGATGATGTCGTTCAATTCTGCCTGATCGGCCGC 549
BSNT_03395___ 550 CCGAATGTCGGAAAGTCTTCACTTGTGAATGCGATGCTCGGCGAAGAACG 599
||||||||||||||.||.||.|||||.||||||||||||||||||||.||
RBAM_021000__ 550 CCGAATGTCGGAAAATCATCCCTTGTCAATGCGATGCTCGGCGAAGAGCG 599
BSNT_03395___ 600 CGTTATTGTCAGCAACGTGGCTGGAACGACAAGAGATGCTGTTGATACGT 649
.|||||.||.||||||||.||.||||||||.|||||.|||||.||||||.
RBAM_021000__ 600 GGTTATCGTGAGCAACGTAGCCGGAACGACTAGAGACGCTGTGGATACGG 649
BSNT_03395___ 650 CATTTACTTACAACCAGCAGGAGTTTGTCATTGTCGATACTGCAGGTATG 699
|.||.||.|||||.||||||||.|||||.||.||.||.||.||.||.|||
RBAM_021000__ 650 CGTTCACCTACAATCAGCAGGAATTTGTAATCGTTGACACGGCGGGAATG 699
BSNT_03395___ 700 CGAAAAAAAGGGAAAGTCTATGAAACGACTGAGAAGTATAGTGTACTGCG 749
.|||||||.||.|||||.||||||||.||.||.||.||.|||||.||.||
RBAM_021000__ 700 AGAAAAAAGGGTAAAGTATATGAAACAACAGAAAAATACAGTGTGCTTCG 749
BSNT_03395___ 750 GGCGCTAAAAGCGATTGACCGCTCAGAAGTCGT-GGCGGTTGTGCTGGAT 798
||||.|||||||.||||||||||||||.||||| ||| |||||||||.||
RBAM_021000__ 750 GGCGTTAAAAGCCATTGACCGCTCAGACGTCGTCGGC-GTTGTGCTGAAT 798
BSNT_03395___ 799 GGCGAAGAAGGCATTATTGAACAGGACAAGCGTATCGCCGGTTATGCACA 848
|..|||||||||||..||||.|||||||||||.||||||||.||.||.||
RBAM_021000__ 799 GCAGAAGAAGGCATCCTTGAGCAGGACAAGCGGATCGCCGGATACGCCCA 848
BSNT_03395___ 849 CGAAGCGGGCAAGGCCGTCGTCATCGTCGTAAACAAATGGGATGCTGTTG 898
.|||||.||.||.|||||||||||..|||||||||||||||||||.||||
RBAM_021000__ 849 TGAAGCCGGGAAAGCCGTCGTCATTATCGTAAACAAATGGGATGCCGTTG 898
BSNT_03395___ 899 ACAAAGATGAGAGCACAATGAAAGAATTTGAAGAAAATATTCGCGATCAT 948
|.|||||.|||.||||.|||||||||||||||.|.||||||||.||.|||
RBAM_021000__ 899 ATAAAGACGAGCGCACGATGAAAGAATTTGAACAGAATATTCGGGAACAT 948
BSNT_03395___ 949 TTTCAATTTCTGGATTATGCGCCAATCCTATTTATGTCTGCCTTAACGAA 998
||.||||||||.|||||.|||||..|.||.||||||||.||..|.||||.
RBAM_021000__ 949 TTCCAATTTCTCGATTACGCGCCGGTGCTGTTTATGTCGGCACTGACGAC 998
BSNT_03395___ 999 AAAACGGATCCATACGCTGATGCCTGCGATTATTAAAGCAAGTGAAAATC 1048
|||.|||||.|||||.||.||||||||||||||||||||.||||||||.|
RBAM_021000__ 999 AAAGCGGATTCATACACTCATGCCTGCGATTATTAAAGCGAGTGAAAACC 1048
BSNT_03395___ 1049 ATTCACTTCGAGTTCAGACGAACGTCTTAAATGATGTCATCATGGATGCT 1098
|.||.||.||.||.|||||.||.|||||||||||||||||.||||||||.
RBAM_021000__ 1049 ACTCTCTCCGCGTGCAGACAAATGTCTTAAATGATGTCATTATGGATGCG 1098
BSNT_03395___ 1099 GTGGCAATGAACCCGACACCGACTCATAACGGTTCTCGTTTGAAAATTTA 1148
||.||.|||||.||.||.|||||.||.|||||.||.|||.||||||||||
RBAM_021000__ 1099 GTCGCCATGAATCCAACTCCGACGCACAACGGCTCCCGTCTGAAAATTTA 1148
BSNT_03395___ 1149 CTATGCGACTCAAGTGTCGGTAAAGCCGCCAAGCTTCGTTGTGTTTGTAA 1198
.||||||||||||||..|.||.||||||||.|||||||||||.|||||.|
RBAM_021000__ 1149 TTATGCGACTCAAGTCGCTGTTAAGCCGCCGAGCTTCGTTGTTTTTGTCA 1198
BSNT_03395___ 1199 ACGATCCGGAATTGATGCATTTTTCATACGAACGGTTTTTAGAAAACCGA 1248
|||||||||||.|||||||||||||.||.|||||.|||||||||||||||
RBAM_021000__ 1199 ACGATCCGGAACTGATGCATTTTTCTTATGAACGCTTTTTAGAAAACCGA 1248
BSNT_03395___ 1249 ATCAGAGACGCGTTCGGTTTTGAGGGGACACCAATCAAAATATTTGCAAG 1298
|||.|.|||||.|||||.|||||.||.||.|||||.||||||||||||||
RBAM_021000__ 1249 ATCCGGGACGCTTTCGGATTTGAAGGTACGCCAATTAAAATATTTGCAAG 1298
BSNT_03395___ 1299 AGCTAGAAAATAA 1311
|||.|||||||||
RBAM_021000__ 1299 AGCAAGAAAATAA 1311
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