Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03394 and RBAM_020990
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:37
# Commandline: needle
# -asequence dna-align/BSNT_03394___gpsA.1.9828.seq
# -bsequence dna-align/RBAM_020990___gpsA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03394___gpsA-RBAM_020990___gpsA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03394___gpsA-RBAM_020990___gpsA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03394___gpsA
# 2: RBAM_020990___gpsA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1045
# Identity: 797/1045 (76.3%)
# Similarity: 797/1045 (76.3%)
# Gaps: 14/1045 ( 1.3%)
# Score: 2966.0
#
#
#=======================================
BSNT_03394___ 1 ATGAAAAAAGTCACAATGCTTGGAGCAGGGAGTTGGGGAACAGCACTGGC 50
|||||||||||..|||||||||||||.||.||.|||||.||.|||||..|
RBAM_020990__ 1 ATGAAAAAAGTGGCAATGCTTGGAGCGGGAAGCTGGGGCACTGCACTTTC 50
BSNT_03394___ 51 TTTAGTTCTAACTGATAATGGAAATGAAGT-GTGTGTGTGGGCTCACCGT 99
||||||.||..|||||||.|||.||.|||| .|| .||||||..||||||
RBAM_020990__ 51 TTTAGTGCTGGCTGATAACGGACATCAAGTCATG-ATGTGGGGACACCGT 99
BSNT_03394___ 100 GCAGATTTAATTCATCAAATTAATGAGTTGCATGAAAACAAAGATTATTT 149
||.||.||.||..|||||||.||.||..|||||||||||||||||||..|
RBAM_020990__ 100 GCCGAATTGATCGATCAAATCAACGAACTGCATGAAAACAAAGATTACCT 149
BSNT_03394___ 150 GCCGAATGTTAAGCTGTCTACATCCATTAAAGGAACAACAGATATGAAAG 199
||||...||..||||.||.|..||.||.|..||.|||.|.|||.|.|..|
RBAM_020990__ 150 GCCGGGGGTGGAGCTATCAAGTTCTATCATCGGTACAGCTGATTTAAGCG 199
BSNT_03394___ 200 AGGCTGTTTCAGACGCAGATGTCATTATCGTTGCGGTCCCGACAAAAGCA 249
|||||.|...||..||.||..||||.||.||.||.||.|||||||||||.
RBAM_020990__ 200 AGGCTTTAAAAGGAGCTGACTTCATCATTGTGGCAGTTCCGACAAAAGCC 249
BSNT_03394___ 250 ATTCGGGAAGTGCTGAGACAGGCTGTCCCTTTTATAACGAAAAAGGCAGT 299
||||||||||||||||.|.|||||.|.||.|..||..||||| ||.|
RBAM_020990__ 250 ATTCGGGAAGTGCTGAAAAAGGCTCTGCCGTACATCCCGAAA----CAAT 295
BSNT_03394___ 300 C----TTTGTTCATGTCAGCAAGGGTATTGAGCCAGATTCACTTCTGCGC 345
| ||||||||||||||||||||.||||||||.|||||.|||||.||.
RBAM_020990__ 296 CGATTTTTGTTCATGTCAGCAAGGGAATTGAGCCGGATTCGCTTCTCCGT 345
BSNT_03394___ 346 ATTTCTGAAATTATGGAAATTGAGCT-CCCGAGTGATGT-CAGAAAAGAT 393
|||||.|||.|.||||||...||||| ||.||| || || |||||||||.
RBAM_020990__ 346 ATTTCAGAATTAATGGAAGAGGAGCTGCCTGAG-GA-GTACAGAAAAGAC 393
BSNT_03394___ 394 ATCGTTGTCCTTTCCGGCCCGAGTCATGCGGAAGAAGTAGGGTTGCGGCA 443
|||||.||.|||||.||.|||||.||.||.||.|||||.||.||..|.||
RBAM_020990__ 394 ATCGTCGTGCTTTCAGGGCCGAGCCACGCTGAGGAAGTCGGATTAAGACA 443
BSNT_03394___ 444 CCCCACAACTGTTACTGCATCTTCAAAGAGCATGAGGGCAGCAGAAGAGG 493
|||.||.||||||||..||||||||||.|..||.|.|||.|||||||.||
RBAM_020990__ 444 CCCGACGACTGTTACATCATCTTCAAAAAATATCAAGGCTGCAGAAGCGG 493
BSNT_03394___ 494 TGCAGGATCTATTTATTAATCACAATTTTCGGGTGTACACAAATCCTGAC 543
|.||||||.||||.||.||.||..||||.||.||.||.||.|||||.||.
RBAM_020990__ 494 TTCAGGATTTATTCATGAACCAGCATTTCCGCGTCTATACCAATCCGGAT 543
BSNT_03394___ 544 ATTATCGGAGTTGAAATCGGAGGGGCTTTAAAAAATATTATTGCCCTTGC 593
||.|||||.||.|||||.||.||.||.|||||.|||||.||.||.|||||
RBAM_020990__ 544 ATGATCGGTGTGGAAATAGGGGGAGCGTTAAAGAATATCATCGCTCTTGC 593
BSNT_03394___ 594 TGCAGGAATTACAGATGGTTTAGGGTACGGCGACAATGCCAAAGCTGCTT 643
.||.||.||||||||.||.||.||.|||||.||.|||||.|||||.||.|
RBAM_020990__ 594 AGCGGGGATTACAGACGGATTGGGATACGGAGATAATGCAAAAGCGGCCT 643
BSNT_03394___ 644 TGATTACACGCGGACTTGCCGAAATCGCGAGACTCGGAACGAAAATGGGC 693
|.||.||.||.||.|||||.||||||||.||||||||.||.||.||||||
RBAM_020990__ 644 TAATCACCCGAGGTCTTGCTGAAATCGCCAGACTCGGCACAAAGATGGGC 693
BSNT_03394___ 694 GGAAATCCCTTGACGTTCTCTGGATTGACAGGAGTAGGCGATCTGATTGT 743
||||||||..|.||.||.||.||..||||.||.|||||||||.|.||.||
RBAM_020990__ 694 GGAAATCCGCTCACCTTTTCCGGCCTGACCGGCGTAGGCGATTTAATCGT 743
BSNT_03394___ 744 GACGTGCACAAGTGTTCATTCCAGAAACTGGCGTGCGGGCAATTTGCTCG 793
||||||.|||||.|||||||||.||||||||||.||.|||||..||||||
RBAM_020990__ 744 GACGTGTACAAGCGTTCATTCCCGAAACTGGCGCGCCGGCAACCTGCTCG 793
BSNT_03394___ 794 GAAAAGGGTACAAGCTTGAAGATGTTCTTGAAGAGATGGGAATGGTAGTC 843
|.|||||.||.|||||.||||.|||.||.||..|||||||.|||||.||.
RBAM_020990__ 794 GCAAAGGATATAAGCTGGAAGCTGTCCTGGATAAGATGGGGATGGTTGTT 843
BSNT_03394___ 844 GAAGGCGTCCGCACGACGAAAGCGGCTTACCAGCTTTCGAAGAAATATGA 893
||||||||.||.|||||||||||.||.||.|||||.||..|.|||||..|
RBAM_020990__ 844 GAAGGCGTGCGGACGACGAAAGCTGCGTATCAGCTGTCTCAAAAATACCA 893
BSNT_03394___ 894 TGTTAAAATGCCGATTACAGAAGCTCTCCATCAGGTCCTATTCAACGGAC 943
.||.|||||||||||.|||||.||.||.||.||.||..||||.|||||.|
RBAM_020990__ 894 AGTGAAAATGCCGATCACAGAGGCGCTTCACCAAGTATTATTTAACGGGC 943
BSNT_03394___ 944 AAAAAGTGGAAACCGCTGTTGAATCTTTAATGGCGAGAGGGAAAACCCAC 993
|.||.||.|||||.||.||.|||||.||||||||.||||.|||||||||.
RBAM_020990__ 944 AGAAGGTAGAAACGGCCGTAGAATCCTTAATGGCCAGAGTGAAAACCCAT 993
BSNT_03394___ 994 GAGATGGAGGATTTGGTAAATACGTTTGAAAATCAAGTGAAGTAA 1038
||||||||.||.|||||.||.||.||.|||||.|..|||||||.|
RBAM_020990__ 994 GAGATGGAAGACTTGGTCAACACATTCGAAAACCGGGTGAAGTGA 1038
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