Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_03392 and RBAM_020970

See Amino acid alignment / Visit BSNT_03392 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:36
# Commandline: needle
#    -asequence dna-align/BSNT_03392___yphF.1.9828.seq
#    -bsequence dna-align/RBAM_020970___yphF.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03392___yphF-RBAM_020970___yphF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03392___yphF-RBAM_020970___yphF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03392___yphF
# 2: RBAM_020970___yphF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 786
# Identity:     510/786 (64.9%)
# Similarity:   510/786 (64.9%)
# Gaps:         102/786 (13.0%)
# Score: 1641.5
# 
#
#=======================================

BSNT_03392___      1 ATG-----GGTAAACTGAAGTGC----------GCAATCATTTTTGCGGC     35
                     |||     |.||||   ||..||          |||||         |||
RBAM_020970__      1 ATGCATAAGTTAAA---AATGGCCGTCATAACGGCAAT---------GGC     38

BSNT_03392___     36 AGTCGTGTTTTTATCCGGATGTTTATATCCAAATGAA-CGGAAAA-----     79
                     .||..|..|..|.|||||.|||.|.||.||   |||| |||||||     
RBAM_020970__     39 GGTGCTCCTGCTGTCCGGCTGTCTGTACCC---TGAAGCGGAAAAAACTG     85

BSNT_03392___     80 -----GCAGTGTGCATGCCATTCCTTATCAAGACCAGCTAAAGCAGGTTC    124
                          ..|||.|           ||||..||.|.|||||..|||||||.|
RBAM_020970__     86 AAAATAAAGTAT-----------CTTACAAACATCAGCTTCAGCAGGTGC    124

BSNT_03392___    125 AATCTGCTGTTGATGAATTTCAAAAGGCAAATGGAGGGCTGCTTCCCATT    174
                     ||.|.||.||.|||||||||.|||||||.||.||.||.||.||.||.|||
RBAM_020970__    125 AAGCGGCAGTGGATGAATTTAAAAAGGCGAACGGCGGACTTCTGCCGATT    174

BSNT_03392___    175 CAAACAAAAGATATGTCGACACCGCTATATCAAAAATATCCGATAGACTT    224
                     ||.||||||||||||...||||||||.||||||||||||||||||||.||
RBAM_020970__    175 CAGACAAAAGATATGAAAACACCGCTCTATCAAAAATATCCGATAGATTT    224

BSNT_03392___    225 TAACCGGTTAGCGCCAAGATACATAGCTGAACCTCCAAGTACGGCATTTG    274
                     |||.|||.|.|||||.||||||||||..||.||.||.....|.||.|.||
RBAM_020970__    225 TAAGCGGCTCGCGCCCAGATACATAGAGGAGCCGCCGGCCTCAGCTTATG    274

BSNT_03392___    275 AAAGCGGGGGAGACTATCAATACGTGCTTGTTGACGTAGAGAACGATCCG    324
                     |||||||||||...||.||||||||||||||.||.||.||..|..|.|||
RBAM_020970__    275 AAAGCGGGGGAATGTACCAATACGTGCTTGTCGATGTGGAACATAAGCCG    324

BSNT_03392___    325 ACTGTTAAATTAATTGATCTAAAGATGGCAGAAAAAATTCGCGATGTGAA    374
                     ||.||.||..|..|.|||||..|.|||||.|||..|||.|||||..||||
RBAM_020970__    325 ACCGTCAAGCTGGTCGATCTCCAAATGGCGGAAGCAATCCGCGACATGAA    374

BSNT_03392___    375 ATTGCGCATCCAAATGTATCGTCAGG---AGCATCAATATCCGCCTTACA    421
                     ..||||..||.|||||||   |||||   |||||..||||||.||.||..
RBAM_020970__    375 GCTGCGTGTCAAAATGTA---TCAGGAAAAGCATACATATCCTCCCTATG    421

BSNT_03392___    422 AGGATGTGCTATCTCGCGATT----------TATTTACACTCGATGAGAA    461
                     ||||          |||..||          |.||.||..|..||.|.||
RBAM_020970__    422 AGGA----------CGCCGTTTCAAAAGGGCTGTTCACTTTAAATAAAAA    461

BSNT_03392___    462 GAAGCTTGGGGATGGAAG-CTCTCTTACAGTGACAAGCCCAATCTCAGGG    510
                     .|||| |.||.|||.||| |||||.|.||||.|.|||.||..|.|||||.
RBAM_020970__    462 AAAGC-TCGGCATGAAAGACTCTCCTTCAGTCAAAAGTCCGGTTTCAGGC    510

BSNT_03392___    511 AATTCCTTGCCGCTTATGATTGACGGAGACGGAGAAATATATGCTGATTA    560
                     |..||..||||||||.|.||.|..|..|||||||||||.|||||.||.||
RBAM_020970__    511 ACGTCTCTGCCGCTTTTAATCGGTGCTGACGGAGAAATCTATGCCGACTA    560

BSNT_03392___    561 CCG----GACTGAGCTGACTTCT-------TGCCTCAAAAAAAGCAAAAA    599
                     .||    ||           |||       |||||.||..|||.||||||
RBAM_020970__    561 TCGCGTCGA-----------TCTCGCCCGCTGCCTGAAGGAAAACAAAAA    599

BSNT_03392___    600 AACGTTTAAACCCGGGACTGAAATCCAGGATATGATTTGGGAGGAAACCC    649
                     .|...|.|||||.||..|.|||||.||.|||||..|.|||.|.||.||.|
RBAM_020970__    600 GAAAATCAAACCGGGCGCGGAAATTCAAGATATTTTATGGAAAGAGACTC    649

BSNT_03392___    650 CCTTTGTCCCCGCGTTTTCTGTAAAATATACGGTAAATGACAAACAGGAA    699
                     |.||.|||||.||.|||||.||.|.|||.||.||||||||.|||||||||
RBAM_020970__    650 CTTTCGTCCCGGCCTTTTCAGTCACATACACCGTAAATGAAAAACAGGAA    699

BSNT_03392___    700 CCTGTTTTTTTAGAAAATGATATGAAAAAGGAATGA    735
                     ||.|||||||||||||.|.|.|.||||.||||||||
RBAM_020970__    700 CCCGTTTTTTTAGAAAGTCAAACGAAACAGGAATGA    735


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.