Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03383 and RBAM_020920

See Amino acid alignment / Visit BSNT_03383 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:35
# Commandline: needle
#    -asequence dna-align/BSNT_03383___hepS.1.9828.seq
#    -bsequence dna-align/RBAM_020920___hepS.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03383___hepS-RBAM_020920___hepS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03383___hepS-RBAM_020920___hepS.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03383___hepS
# 2: RBAM_020920___hepS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 774
# Identity:     620/774 (80.1%)
# Similarity:   620/774 (80.1%)
# Gaps:          27/774 ( 3.5%)
# Score: 2497.5
# 
#
#=======================================

BSNT_03383___      1 ---------TTGCAAGACATCTACGGAACTTTAGCCAATCTGAACACGAA     41
                              ||||||||||||||||||||||||||.|||||.||.|.|||
RBAM_020920__      1 GTGATATTTTTGCAAGACATCTACGGAACTTTAGCGAATCTAAATATGAA     50

BSNT_03383___     42 ATTAAAACAAAAGCTGTCTCATCCTTATTTAGCGAAGCATATTTCTGCGC     91
                     ||||||||||||||||||||||||||||||||||||.|||||||||||||
RBAM_020920__     51 ATTAAAACAAAAGCTGTCTCATCCTTATTTAGCGAAACATATTTCTGCGC    100

BSNT_03383___     92 CGAAAATTGATGAGGATAAGCTTCTTCTTTTTCATGCTTTATTTGAAGAA    141
                     |.|||||.||||||||||||||||||||||||||.|||||.||||||||.
RBAM_020920__    101 CTAAAATCGATGAGGATAAGCTTCTTCTTTTTCACGCTTTGTTTGAAGAG    150

BSNT_03383___    142 GCTGACATAAAAAACAACGACAGAGAAAATTATATTGTAACAGCGATGCT    191
                     ||.|||||.||.||||||||||||||||||||.||.|||||.||||||||
RBAM_020920__    151 GCGGACATTAAGAACAACGACAGAGAAAATTACATAGTAACTGCGATGCT    200

BSNT_03383___    192 TGTACAAAGCGCCCTTGATACCCATGATGAAGTGACGACAGCTAGAGTCA    241
                     |||.||||||||||||||||||||.|||||||||||.|||||.||||...
RBAM_020920__    201 TGTCCAAAGCGCCCTTGATACCCACGATGAAGTGACAACAGCCAGAGCGT    250

BSNT_03383___    242 TAAAACGAGACGAAAACAAAAACCGCCAATTGACTGTTCTCGCGGGCGAT    291
                     ||||.|||||||||||.||||||||.||..|.||.||.||.||.|||||.
RBAM_020920__    251 TAAAGCGAGACGAAAATAAAAACCGGCAGCTCACCGTGCTTGCCGGCGAC    300

BSNT_03383___    292 TATTTCAGCGGGCTGTACTA--CTCTTTACTATCTGAAATGAAGGATATC    339
                     |||||||||||.|||||.||  |.||||  ||||||||||||||||||||
RBAM_020920__    301 TATTTCAGCGGACTGTATTATTCGCTTT--TATCTGAAATGAAGGATATC    348

BSNT_03383___    340 TACATGATTCGGACGCTTGCTACAGCCATTAAAGAAATCAACGAACATAA    389
                     ||.||||||||||||||.|||||.||.||||||||||||||.||.|||||
RBAM_020920__    349 TATATGATTCGGACGCTCGCTACGGCAATTAAAGAAATCAATGAGCATAA    398

BSNT_03383___    390 AATTCGTCTGTATGACCGTTCTTTCAAGGAC--GAA--AACGATTTTTTC    435
                     |||.||||||||.||.||.|||.|.||.|||  |||  ||    ||..||
RBAM_020920__    399 AATCCGTCTGTACGATCGGTCTGTTAATGACTTGAATCAA----TTGATC    444

BSNT_03383___    436 GAAAG--TGTCGGCATCGTTGAATCAGCTTTATTCCATCGTGTGGCGGAA    483
                     |||||  ||.||  ||.||.|||.|.||..|.||.||..|.|||.|.||.
RBAM_020920__    445 GAAAGCATGGCG--ATTGTGGAAGCGGCCCTGTTTCACAGAGTGTCAGAC    492

BSNT_03383___    484 CACTTCAGCCTCCCGCGCTGGAAAAAGCTGTCGAGTGATTTTTTTGTATT    533
                     |||||.|..||.||||||||||||.|||||.||||||||||||||||||.
RBAM_020920__    493 CACTTTAATCTTCCGCGCTGGAAAGAGCTGGCGAGTGATTTTTTTGTATA    542

BSNT_03383___    534 TAAGCGGCTTATGAACGGAAATGATGCATTTCTGGATGTGATCGGCAGTT    583
                     |||||||||.||||||||.||||.|..||||||.|||||.|||||||.|.
RBAM_020920__    543 TAAGCGGCTGATGAACGGCAATGCTATATTTCTCGATGTCATCGGCAATA    592

BSNT_03383___    584 TTATACAG-CTGGGAAAAACAAAAGAAGAGATATTAGAAGATTGTTTTAA    632
                     ||.||.|| |.||| |||.||||.|..||.|||.|.||||||.|.||...
RBAM_020920__    593 TTGTAAAGTCAGGG-AAATCAAAGGCTGACATAATGGAAGATAGCTTCCG    641

BSNT_03383___    633 AAAAGCGAAAAACAGCATTGAGTCACTTCTGCCTCTAAATTCACCTATTC    682
                     |||.||.||..|.||||||||..|.||.|||||.||.||||||||.||.|
RBAM_020920__    642 AAAGGCAAAGCAAAGCATTGAAACGCTGCTGCCGCTCAATTCACCAATCC    691

BSNT_03383___    683 AGAACATTTTAATAAACCGTCTGAAGACAATCAGCCAAGATCAAACCTAT    732
                     |.|||.|..|..|.|||||.||.||..|.||||||||.||..||||.|||
RBAM_020920__    692 AAAACCTAATGCTGAACCGGCTTAAAGCGATCAGCCAGGACAAAACATAT    741

BSNT_03383___    733 CATCAGAAAGTGGAAGAAGGGTAA    756
                     ||||||||||||||||||||||||
RBAM_020920__    742 CATCAGAAAGTGGAAGAAGGGTAA    765


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