Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03372 and RBAM_020840

See Amino acid alignment / Visit BSNT_03372 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:34
# Commandline: needle
#    -asequence dna-align/BSNT_03372___trpE.1.9828.seq
#    -bsequence dna-align/RBAM_020840___trpE.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03372___trpE-RBAM_020840___trpE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03372___trpE-RBAM_020840___trpE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03372___trpE
# 2: RBAM_020840___trpE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1597
# Identity:    1133/1597 (70.9%)
# Similarity:  1133/1597 (70.9%)
# Gaps:          98/1597 ( 6.1%)
# Score: 3895.5
# 
#
#=======================================

BSNT_03372___      1 ATGAATTTCCAATCAAACATTTCCGCATTTTTAGAGGACAGCTTGTCCCA     50
                     ||||||||.|||||..|..||||...|||||||.|||||||..||.|.||
RBAM_020840__      1 ATGAATTTACAATCGGATGTTTCTTTATTTTTAAAGGACAGTCTGACACA     50

BSNT_03372___     51 CCACACGATACCGATTGTGGAGACCTTCACAGTCGATACACTGACACCCA    100
                     ||.|||.||.||.||.|..|||||.||.||.|||||.||..|.|||||||
RBAM_020840__     51 CCGCACCATTCCAATCGCAGAGACTTTTACGGTCGACACGATCACACCCA    100

BSNT_03372___    101 TTCAAATGATAGAGAAGCTTGACAGGGAGATTACGTATCTTCTTGAAAGC    150
                     ||||.|||.|.||.||.||.|||||..|.||||||||||||.|.||||||
RBAM_020840__    101 TTCAGATGGTTGAAAAACTGGACAGAAACATTACGTATCTTTTAGAAAGC    150

BSNT_03372___    151 AAGGACGATACATCCACTTGGTCCAGATATTCGTTTATCGGCCTGAATCC    200
                     |||||.||..|.||.|..|||||.|||||.||.|||||||||||..||||
RBAM_020840__    151 AAGGATGAGTCGTCAAGCTGGTCGAGATACTCTTTTATCGGCCTCGATCC    200

BSNT_03372___    201 ATTTCTCACAATTAAAGAAGAG--------CAGGGCTGTTTTTCGGCCGC    242
                     .|||.||||.||||||| ||||        ||       ||..|.|||||
RBAM_020840__    201 TTTTATCACGATTAAAG-AGAGTCATAACACA-------TTCACTGCCGC    242

BSNT_03372___    243 TGATCAGGACAGCAAA---------TCTCTTT-ACACAGGAAATGAACTA    282
                     |||||       ||||         .||.||| |..|.|||   |||.||
RBAM_020840__    243 TGATC-------CAAACGGGCATACGCTGTTTGAAGCCGGA---GAATTA    282

BSNT_03372___    283 AAAGAAGTGCTGAACTGGATGAA-------TACCACATACAAAATCAAAA    325
                     ||||..|||||..||||||||||       |.||.|       ||.||||
RBAM_020840__    283 AAAGCCGTGCTTGACTGGATGAATGAGAGCTTCCGC-------ATTAAAA    325

BSNT_03372___    326 CACCTCAGCTTGGCATTCCTTTTGTC-GGCGGAGCTGTCGGGTACTTAAG    374
                     ||||..||||||..||.||.||| || ||.||.||.|||||.||..|.||
RBAM_020840__    326 CACCCGAGCTTGATATCCCATTT-TCGGGAGGGGCGGTCGGTTATCTGAG    374

BSNT_03372___    375 CTATGATATGATCCCGCTGATTGAACCTTCTGTTCCTTCGCATACAAAAG    424
                     ||||||.|||||.||..|||||||.|||||.||.||....||..|.||||
RBAM_020840__    375 CTATGACATGATTCCTTTGATTGAGCCTTCCGTGCCAAGCCACGCGAAAG    424

BSNT_03372___    425 AAACAGACATGGAAAAGTGTATGCTGTTTGTTTGCCGGACATTAATTGCG    474
                     .||||||..|.|||||.||.|||||||||||.|||||||.|.|.||.|||
RBAM_020840__    425 TAACAGATTTCGAAAAATGCATGCTGTTTGTCTGCCGGAAAATCATCGCG    474

BSNT_03372___    475 TATGATCATGAAACCAAAAACGTCCACTTTATCCAATATGCAAGGCTTAA    524
                     ||.||.||.|||||.|||.|.||.||.||.||.||||||||...||||||
RBAM_020840__    475 TACGACCACGAAACGAAACAAGTGCATTTCATTCAATATGCGGAGCTTAA    524

BSNT_03372___    525 TGGAGAGGAAACAAAAAACGAAAAAATGGATGTATTCCATCAAAATCATC    574
                     .||...|||.||..|..|.|||||...||..||.||..|..|||||    
RBAM_020840__    525 CGGCCGGGAGACGGAGGAAGAAAAGCGGGCCGTTTTTAAAGAAAAT----    570

BSNT_03372___    575 T----GGAGCTTCAAAATCTCA--------TTGAAAAAAT-GATGGACCA    611
                     |    ||||||||..||.||.|        ||||.|.||| |        
RBAM_020840__    571 TGCGCGGAGCTTCGTAAGCTTATCGGTATTTTGACAGAATCG--------    612

BSNT_03372___    612 AAAAAACATAAAAGAGCTGTTTCTCTCTGCTGATTCATACAAGACGCCCA    661
                      |||.|.||.|||||||.||||.|.|||...||..|.|...|.|||||.|
RBAM_020840__    613 -AAAGATATGAAAGAGCCGTTTTTTTCTAAAGAAACGTTTGACACGCCAA    661

BSNT_03372___    662 GCTTTGAGACGGTATCTTCTAATTAT--GAAA-AATCGGCTTTTATGGCT    708
                     |.||||...|.||..|.||.||||||  |||| ||   |..||||||||.
RBAM_020840__    662 GTTTTGCCGCTGTGACATCAAATTATACGAAAGAA---GAGTTTATGGCC    708

BSNT_03372___    709 GATGTAGAAAAAATCAAAAGCTATATAAAAACAGGCGATATCTTCCA--G    756
                     |..||..|.|||.|.|||...|||||||||.|.||.||.||.||.||  |
RBAM_020840__    709 GGCGTTAATAAACTGAAAGAATATATAAAAGCGGGAGACATTTTTCAAGG    758

BSNT_03372___    757 GGTGTTTTATCACAAAAATTTGAGGTGCCGATAAAAGCAG--ATGCTTTT    804
                     ||||.||  ||.|||||.|||||..|.|||.|  |..|||  ||.|.|||
RBAM_020840__    759 GGTGCTT--TCGCAAAAGTTTGACATTCCGGT--ATCCAGACATTCATTT    804

BSNT_03372___    805 GAGTTATACCGAGTGCTTAGGATCGTCAATCCTTCGCCGTATATGTATTA    854
                     |||.|.|||.|.|||||..|.||||||||||||||.||.||||||||.||
RBAM_020840__    805 GAGCTGTACAGGGTGCTCCGCATCGTCAATCCTTCACCTTATATGTACTA    854

BSNT_03372___    855 TATGAAACTGCTAGACAGAGAAATAGTCGGCAGCTCTCCGGAACGGTTAA    904
                     |||.|||||||..||||||||.||.|||||.||.||.||.|||||..|.|
RBAM_020840__    855 TATCAAACTGCCTGACAGAGACATTGTCGGGAGTTCGCCTGAACGTCTGA    904

BSNT_03372___    905 TACACGTTCAAGACGGGCACTTAGAAATCCATCCGATTGCCGGTACGAGA    954
                     |.|.|||.||.|||.|||||.|.|||||.||||||||||||||.||||||
RBAM_020840__    905 TCCGCGTGCATGACAGGCACCTGGAAATTCATCCGATTGCCGGAACGAGA    954

BSNT_03372___    955 AAACGCGGTGCAGACAAAGCTGAAGATGAGAGATTGAAGGTTGAGCTGAT   1004
                     |.|.|.||.||.|..||||..||.||.||..|..||||....||||||||
RBAM_020840__    955 AGAAGGGGCGCCGGAAAAGAAGAGGACGAACGCCTGAAAAAAGAGCTGAT   1004

BSNT_03372___   1005 GAAGGATGAAAAAGAAAAGGCGGAGCATTACATGCTCGTTGATCTTGCCC   1054
                     |||.||.|||||||||||.||.||.||||||||||||||.||||||||.|
RBAM_020840__   1005 GAATGACGAAAAAGAAAAAGCTGAACATTACATGCTCGTCGATCTTGCGC   1054

BSNT_03372___   1055 GAAACGATATCGGCAGAGTAGCAGAGTATGGTTCTGTTTCTGTGCCGGAG   1104
                     |.||.||.|||||||||||.||.|||||.|||||.||..|.||.|||||.
RBAM_020840__   1055 GCAATGACATCGGCAGAGTTGCGGAGTACGGTTCCGTAGCCGTTCCGGAA   1104

BSNT_03372___   1105 TTCACAAAAATTGTTTCCTTTTCACATGTCATGCACATTATCTCGGTGGT   1154
                     ||||||||..|.|||||.|||||||||||.||||||||.|||||.||.||
RBAM_020840__   1105 TTCACAAAGGTCGTTTCTTTTTCACATGTGATGCACATCATCTCTGTTGT   1154

BSNT_03372___   1155 TACAGGCCGATTGAAAAAAGGG-GTTCATCCTGTCGATGCACTGATGTCT   1203
                     .||.||||| ||.|||..|||| .|.|||||.||.||.||.||||||||.
RBAM_020840__   1155 AACCGGCCG-TTTAAAGCAGGGCATCCATCCCGTTGACGCGCTGATGTCG   1203

BSNT_03372___   1204 GCTTTCCCGGCGGGGACTTTAACAGGCGCACCCAAAATCCGTGCCATGCA   1253
                     ||.||||||||.||.||..|.||.|||||.||.||||||||.||.|||||
RBAM_020840__   1204 GCATTCCCGGCAGGAACACTCACGGGCGCTCCGAAAATCCGCGCGATGCA   1253

BSNT_03372___   1254 GCTTTTGCAAGAGCTCGAGCCAACACCGAGAGAGACATACGGAGGATGTA   1303
                     ||||||..|.||..|.||.||.||..|.|||||.||.|||||.|||||||
RBAM_020840__   1254 GCTTTTAAATGAATTAGAACCGACTTCCAGAGAAACCTACGGCGGATGTA   1303

BSNT_03372___   1304 TTGCCTACATTGGGTTTGACGGGAATATCGACTCTTGTATTACGATTCGC   1353
                     |.||.||.||.||.|||||||||...||.||.||.||||||||.||.|||
RBAM_020840__   1304 TCGCTTATATCGGATTTGACGGGTCAATTGATTCGTGTATTACCATCCGC   1353

BSNT_03372___   1354 ACGATGAGTGTAAAGAACGG--CGTTGCATCGATACAGGCAGGTGCTGGC   1401
                     ||.||||||||.||.|||||  ||  ||||||.|.|||||.||.||.||.
RBAM_020840__   1354 ACCATGAGTGTCAAAAACGGTACG--GCATCGGTGCAGGCGGGCGCGGGA   1401

BSNT_03372___   1402 ATTGTTGCTGATTCTGTTCCGGAAGCCGAATACGAAGAAAGCTGTAATAA   1451
                     ||.||.||.|||||.||.||||||||||||||.||||||||||||||.||
RBAM_020840__   1402 ATAGTCGCCGATTCCGTCCCGGAAGCCGAATATGAAGAAAGCTGTAACAA   1451

BSNT_03372___   1452 AGCCGGTGCGCTGCTGAAAACGATTCATATTGCAGAAGACATGTTTCATA   1501
                     |||.||.|||||..|.|||||||||||.||.|||||||||||.|||..|.
RBAM_020840__   1452 AGCGGGGGCGCTTTTAAAAACGATTCAAATCGCAGAAGACATCTTTTCTG   1501

BSNT_03372___   1502 GCAAGGAGGATAAAGCTGATGAACAGATTTCTACAATTGTGCGTTGA   1548
                     ||..||||||.||..|.||||||||.||||||.||||.|||||||.|
RBAM_020840__   1502 GCGGGGAGGAGAAGACGGATGAACAAATTTCTGCAATCGTGCGTTAA   1548


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