Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03372 and RBAM_020840
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:34
# Commandline: needle
# -asequence dna-align/BSNT_03372___trpE.1.9828.seq
# -bsequence dna-align/RBAM_020840___trpE.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03372___trpE-RBAM_020840___trpE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03372___trpE-RBAM_020840___trpE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03372___trpE
# 2: RBAM_020840___trpE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1597
# Identity: 1133/1597 (70.9%)
# Similarity: 1133/1597 (70.9%)
# Gaps: 98/1597 ( 6.1%)
# Score: 3895.5
#
#
#=======================================
BSNT_03372___ 1 ATGAATTTCCAATCAAACATTTCCGCATTTTTAGAGGACAGCTTGTCCCA 50
||||||||.|||||..|..||||...|||||||.|||||||..||.|.||
RBAM_020840__ 1 ATGAATTTACAATCGGATGTTTCTTTATTTTTAAAGGACAGTCTGACACA 50
BSNT_03372___ 51 CCACACGATACCGATTGTGGAGACCTTCACAGTCGATACACTGACACCCA 100
||.|||.||.||.||.|..|||||.||.||.|||||.||..|.|||||||
RBAM_020840__ 51 CCGCACCATTCCAATCGCAGAGACTTTTACGGTCGACACGATCACACCCA 100
BSNT_03372___ 101 TTCAAATGATAGAGAAGCTTGACAGGGAGATTACGTATCTTCTTGAAAGC 150
||||.|||.|.||.||.||.|||||..|.||||||||||||.|.||||||
RBAM_020840__ 101 TTCAGATGGTTGAAAAACTGGACAGAAACATTACGTATCTTTTAGAAAGC 150
BSNT_03372___ 151 AAGGACGATACATCCACTTGGTCCAGATATTCGTTTATCGGCCTGAATCC 200
|||||.||..|.||.|..|||||.|||||.||.|||||||||||..||||
RBAM_020840__ 151 AAGGATGAGTCGTCAAGCTGGTCGAGATACTCTTTTATCGGCCTCGATCC 200
BSNT_03372___ 201 ATTTCTCACAATTAAAGAAGAG--------CAGGGCTGTTTTTCGGCCGC 242
.|||.||||.||||||| |||| || ||..|.|||||
RBAM_020840__ 201 TTTTATCACGATTAAAG-AGAGTCATAACACA-------TTCACTGCCGC 242
BSNT_03372___ 243 TGATCAGGACAGCAAA---------TCTCTTT-ACACAGGAAATGAACTA 282
||||| |||| .||.||| |..|.||| |||.||
RBAM_020840__ 243 TGATC-------CAAACGGGCATACGCTGTTTGAAGCCGGA---GAATTA 282
BSNT_03372___ 283 AAAGAAGTGCTGAACTGGATGAA-------TACCACATACAAAATCAAAA 325
||||..|||||..|||||||||| |.||.| ||.||||
RBAM_020840__ 283 AAAGCCGTGCTTGACTGGATGAATGAGAGCTTCCGC-------ATTAAAA 325
BSNT_03372___ 326 CACCTCAGCTTGGCATTCCTTTTGTC-GGCGGAGCTGTCGGGTACTTAAG 374
||||..||||||..||.||.||| || ||.||.||.|||||.||..|.||
RBAM_020840__ 326 CACCCGAGCTTGATATCCCATTT-TCGGGAGGGGCGGTCGGTTATCTGAG 374
BSNT_03372___ 375 CTATGATATGATCCCGCTGATTGAACCTTCTGTTCCTTCGCATACAAAAG 424
||||||.|||||.||..|||||||.|||||.||.||....||..|.||||
RBAM_020840__ 375 CTATGACATGATTCCTTTGATTGAGCCTTCCGTGCCAAGCCACGCGAAAG 424
BSNT_03372___ 425 AAACAGACATGGAAAAGTGTATGCTGTTTGTTTGCCGGACATTAATTGCG 474
.||||||..|.|||||.||.|||||||||||.|||||||.|.|.||.|||
RBAM_020840__ 425 TAACAGATTTCGAAAAATGCATGCTGTTTGTCTGCCGGAAAATCATCGCG 474
BSNT_03372___ 475 TATGATCATGAAACCAAAAACGTCCACTTTATCCAATATGCAAGGCTTAA 524
||.||.||.|||||.|||.|.||.||.||.||.||||||||...||||||
RBAM_020840__ 475 TACGACCACGAAACGAAACAAGTGCATTTCATTCAATATGCGGAGCTTAA 524
BSNT_03372___ 525 TGGAGAGGAAACAAAAAACGAAAAAATGGATGTATTCCATCAAAATCATC 574
.||...|||.||..|..|.|||||...||..||.||..|..|||||
RBAM_020840__ 525 CGGCCGGGAGACGGAGGAAGAAAAGCGGGCCGTTTTTAAAGAAAAT---- 570
BSNT_03372___ 575 T----GGAGCTTCAAAATCTCA--------TTGAAAAAAT-GATGGACCA 611
| ||||||||..||.||.| ||||.|.||| |
RBAM_020840__ 571 TGCGCGGAGCTTCGTAAGCTTATCGGTATTTTGACAGAATCG-------- 612
BSNT_03372___ 612 AAAAAACATAAAAGAGCTGTTTCTCTCTGCTGATTCATACAAGACGCCCA 661
|||.|.||.|||||||.||||.|.|||...||..|.|...|.|||||.|
RBAM_020840__ 613 -AAAGATATGAAAGAGCCGTTTTTTTCTAAAGAAACGTTTGACACGCCAA 661
BSNT_03372___ 662 GCTTTGAGACGGTATCTTCTAATTAT--GAAA-AATCGGCTTTTATGGCT 708
|.||||...|.||..|.||.|||||| |||| || |..||||||||.
RBAM_020840__ 662 GTTTTGCCGCTGTGACATCAAATTATACGAAAGAA---GAGTTTATGGCC 708
BSNT_03372___ 709 GATGTAGAAAAAATCAAAAGCTATATAAAAACAGGCGATATCTTCCA--G 756
|..||..|.|||.|.|||...|||||||||.|.||.||.||.||.|| |
RBAM_020840__ 709 GGCGTTAATAAACTGAAAGAATATATAAAAGCGGGAGACATTTTTCAAGG 758
BSNT_03372___ 757 GGTGTTTTATCACAAAAATTTGAGGTGCCGATAAAAGCAG--ATGCTTTT 804
||||.|| ||.|||||.|||||..|.|||.| |..||| ||.|.|||
RBAM_020840__ 759 GGTGCTT--TCGCAAAAGTTTGACATTCCGGT--ATCCAGACATTCATTT 804
BSNT_03372___ 805 GAGTTATACCGAGTGCTTAGGATCGTCAATCCTTCGCCGTATATGTATTA 854
|||.|.|||.|.|||||..|.||||||||||||||.||.||||||||.||
RBAM_020840__ 805 GAGCTGTACAGGGTGCTCCGCATCGTCAATCCTTCACCTTATATGTACTA 854
BSNT_03372___ 855 TATGAAACTGCTAGACAGAGAAATAGTCGGCAGCTCTCCGGAACGGTTAA 904
|||.|||||||..||||||||.||.|||||.||.||.||.|||||..|.|
RBAM_020840__ 855 TATCAAACTGCCTGACAGAGACATTGTCGGGAGTTCGCCTGAACGTCTGA 904
BSNT_03372___ 905 TACACGTTCAAGACGGGCACTTAGAAATCCATCCGATTGCCGGTACGAGA 954
|.|.|||.||.|||.|||||.|.|||||.||||||||||||||.||||||
RBAM_020840__ 905 TCCGCGTGCATGACAGGCACCTGGAAATTCATCCGATTGCCGGAACGAGA 954
BSNT_03372___ 955 AAACGCGGTGCAGACAAAGCTGAAGATGAGAGATTGAAGGTTGAGCTGAT 1004
|.|.|.||.||.|..||||..||.||.||..|..||||....||||||||
RBAM_020840__ 955 AGAAGGGGCGCCGGAAAAGAAGAGGACGAACGCCTGAAAAAAGAGCTGAT 1004
BSNT_03372___ 1005 GAAGGATGAAAAAGAAAAGGCGGAGCATTACATGCTCGTTGATCTTGCCC 1054
|||.||.|||||||||||.||.||.||||||||||||||.||||||||.|
RBAM_020840__ 1005 GAATGACGAAAAAGAAAAAGCTGAACATTACATGCTCGTCGATCTTGCGC 1054
BSNT_03372___ 1055 GAAACGATATCGGCAGAGTAGCAGAGTATGGTTCTGTTTCTGTGCCGGAG 1104
|.||.||.|||||||||||.||.|||||.|||||.||..|.||.|||||.
RBAM_020840__ 1055 GCAATGACATCGGCAGAGTTGCGGAGTACGGTTCCGTAGCCGTTCCGGAA 1104
BSNT_03372___ 1105 TTCACAAAAATTGTTTCCTTTTCACATGTCATGCACATTATCTCGGTGGT 1154
||||||||..|.|||||.|||||||||||.||||||||.|||||.||.||
RBAM_020840__ 1105 TTCACAAAGGTCGTTTCTTTTTCACATGTGATGCACATCATCTCTGTTGT 1154
BSNT_03372___ 1155 TACAGGCCGATTGAAAAAAGGG-GTTCATCCTGTCGATGCACTGATGTCT 1203
.||.||||| ||.|||..|||| .|.|||||.||.||.||.||||||||.
RBAM_020840__ 1155 AACCGGCCG-TTTAAAGCAGGGCATCCATCCCGTTGACGCGCTGATGTCG 1203
BSNT_03372___ 1204 GCTTTCCCGGCGGGGACTTTAACAGGCGCACCCAAAATCCGTGCCATGCA 1253
||.||||||||.||.||..|.||.|||||.||.||||||||.||.|||||
RBAM_020840__ 1204 GCATTCCCGGCAGGAACACTCACGGGCGCTCCGAAAATCCGCGCGATGCA 1253
BSNT_03372___ 1254 GCTTTTGCAAGAGCTCGAGCCAACACCGAGAGAGACATACGGAGGATGTA 1303
||||||..|.||..|.||.||.||..|.|||||.||.|||||.|||||||
RBAM_020840__ 1254 GCTTTTAAATGAATTAGAACCGACTTCCAGAGAAACCTACGGCGGATGTA 1303
BSNT_03372___ 1304 TTGCCTACATTGGGTTTGACGGGAATATCGACTCTTGTATTACGATTCGC 1353
|.||.||.||.||.|||||||||...||.||.||.||||||||.||.|||
RBAM_020840__ 1304 TCGCTTATATCGGATTTGACGGGTCAATTGATTCGTGTATTACCATCCGC 1353
BSNT_03372___ 1354 ACGATGAGTGTAAAGAACGG--CGTTGCATCGATACAGGCAGGTGCTGGC 1401
||.||||||||.||.||||| || ||||||.|.|||||.||.||.||.
RBAM_020840__ 1354 ACCATGAGTGTCAAAAACGGTACG--GCATCGGTGCAGGCGGGCGCGGGA 1401
BSNT_03372___ 1402 ATTGTTGCTGATTCTGTTCCGGAAGCCGAATACGAAGAAAGCTGTAATAA 1451
||.||.||.|||||.||.||||||||||||||.||||||||||||||.||
RBAM_020840__ 1402 ATAGTCGCCGATTCCGTCCCGGAAGCCGAATATGAAGAAAGCTGTAACAA 1451
BSNT_03372___ 1452 AGCCGGTGCGCTGCTGAAAACGATTCATATTGCAGAAGACATGTTTCATA 1501
|||.||.|||||..|.|||||||||||.||.|||||||||||.|||..|.
RBAM_020840__ 1452 AGCGGGGGCGCTTTTAAAAACGATTCAAATCGCAGAAGACATCTTTTCTG 1501
BSNT_03372___ 1502 GCAAGGAGGATAAAGCTGATGAACAGATTTCTACAATTGTGCGTTGA 1548
||..||||||.||..|.||||||||.||||||.||||.|||||||.|
RBAM_020840__ 1502 GCGGGGAGGAGAAGACGGATGAACAAATTTCTGCAATCGTGCGTTAA 1548
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