Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03370 and RBAM_020830
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:34
# Commandline: needle
# -asequence dna-align/BSNT_03370___trpD.1.9828.seq
# -bsequence dna-align/RBAM_020830___trpD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03370___trpD-RBAM_020830___trpD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03370___trpD-RBAM_020830___trpD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03370___trpD
# 2: RBAM_020830___trpD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1046
# Identity: 768/1046 (73.4%)
# Similarity: 768/1046 (73.4%)
# Gaps: 58/1046 ( 5.5%)
# Score: 2674.5
#
#
#=======================================
BSNT_03370___ 1 ATGAACAGATTTCTACAATTGTGCGTTGACGGAAAAACCCTTA--CTG-- 46
|||||||.||||||.||||.|||||||.|.|| ||.|| |||
RBAM_020830__ 1 ATGAACAAATTTCTGCAATCGTGCGTTAATGG------CCGTACGCTGAA 44
BSNT_03370___ 47 --CCGGTGAGGCTGAAACGCTGATGAATATGATGATGGCAGCGGAAATGA 94
||||.||.||.||||.|||||||.|.|||||||||...|.|||.|||.
RBAM_020830__ 45 AACCGGAGAAGCCGAAAAGCTGATGGAGATGATGATGAACGGGGACATGT 94
BSNT_03370___ 95 CTCCTTCTGAAATGGGTGGTATATTGTCAATTCTTGCTCATCGGGGGGAG 144
|.|..|||||.||.||.||.||.||.||..|..|.||.||.||.||.||.
RBAM_020830__ 95 CGCAGTCTGAGATCGGCGGGATTTTATCGGTGTTAGCCCACCGAGGTGAA 144
BSNT_03370___ 145 ACGCCAGAAGAGCTTGCGGGTTTTGTGAAGGCAATGCGGGCACACGCTCT 194
|||.|.||.||||||||.||.|||||.||.|..||||||||.|..||.|.
RBAM_020830__ 145 ACGGCGGAGGAGCTTGCCGGATTTGTAAAAGTGATGCGGGCGCGGGCACA 194
BSNT_03370___ 195 TACAGTC-GATGGACTT-CCTGATATTGTTGATACATGCGGAACAGGGGG 242
.||| || |.||| ||| .|.|||.|.||||||||.|||||||||||.||
RBAM_020830__ 195 GACA-TCAGGTGG-CTTGGCGGATGTCGTTGATACGTGCGGAACAGGCGG 242
BSNT_03370___ 243 AGACGGTATTTCCACTTTTAATATCTCAACGGCCTCGGCAATTGTTGCCT 292
||||||.|||||.||.|||||.||.||.|||||..||||.|||...||.|
RBAM_020830__ 243 AGACGGGATTTCTACGTTTAACATATCCACGGCAGCGGCGATTACAGCTT 292
BSNT_03370___ 293 CGGCAGCTGGCGCGAAAATCGCTAAGCATGGCAATCGCTCTGTCTCTTCT 342
|.||.||.||.||.|||.|.||.|||||.||.||||||||.||.||.|||
RBAM_020830__ 293 CTGCTGCCGGAGCTAAAGTTGCCAAGCACGGAAATCGCTCCGTTTCGTCT 342
BSNT_03370___ 343 AAAAGCGGAAGCGCTGATGTTTTAGAGGAGCTAGAGGTTTCTATTCAAAC 392
||||||||.|||||.|||||..|.||..|.||.|.||||||.||||||.|
RBAM_020830__ 343 AAAAGCGGCAGCGCGGATGTGCTGGAAAAACTGGGGGTTTCCATTCAAGC 392
BSNT_03370___ 393 CACTCCCGAAAAGGTCAAAAGCAGCATTGAAA-CAAACAACATGGGATTT 441
||||||.||||..||.|||.|||||||||||| .|||||| |||||.|||
RBAM_020830__ 393 CACTCCAGAAAGCGTTAAACGCAGCATTGAAATGAAACAA-ATGGGGTTT 441
BSNT_03370___ 442 CTTTTTGCGCCGCT-TTACTATTCGTCTATGAAACATGTAGCAGGTACTA 490
.|.||||||||||| ||.| |||||||.|||||.||.||.||.|...|.|
RBAM_020830__ 442 TTGTTTGCGCCGCTGTTTC-ATTCGTCAATGAAGCACGTCGCCGCCGCAA 490
BSNT_03370___ 491 GAAAAGAGCTAGGTTTCAGAACGGTATTTAATCTGCTTGGGCCGCTCAGC 540
||||||||||.||.|||.||||.||||||||||||||.||.|||||||||
RBAM_020830__ 491 GAAAAGAGCTTGGCTTCCGAACCGTATTTAATCTGCTGGGCCCGCTCAGC 540
BSNT_03370___ 541 AATCCTTTACAGGCGAAGCGTCAGGTGATTGGGGTCTATTCTGTTGAAAA 590
||.||..|.||||.||||||.||||||||.||.||||||||..||||.||
RBAM_020830__ 541 AACCCGCTGCAGGTGAAGCGGCAGGTGATCGGCGTCTATTCATTTGATAA 590
BSNT_03370___ 591 AGCTGGACTGATGGCAAGCGCACTGGA-------GACGTTTCAGCCGAAG 633
|||..|.||||||||||||||..|||| || |.|||| .
RBAM_020830__ 591 AGCGCGCCTGATGGCAAGCGCGTTGGAACAATTTGA--TGTCAG-----A 633
BSNT_03370___ 634 CACGTTATGTTTGTATCAAGCCGTGACGGTTTAGATGAGCTTTCAATTAC 683
|||||.|||.||||.||...|||||||||.||||||||.||.||.||.||
RBAM_020830__ 634 CACGTCATGCTTGTGTCGGCCCGTGACGGATTAGATGAACTGTCCATCAC 683
BSNT_03370___ 684 AGCACCGACCGACGTGATTGAATTAAAGGACGGAGAGCGCCGGGAATATA 733
||||||||||||..|.||||||.|.||..||||.||.||.|.|||||||.
RBAM_020830__ 684 AGCACCGACCGATATTATTGAACTGAAAAACGGTGAACGTCTGGAATATT 733
BSNT_03370___ 734 CCGTTTCACCCGAAGATTTCGGTTTCACAAATGGCAGACTTGAAGATTTA 783
||||||||||.|||.|.||||||||..||.|.||...|||..|.|||.|.
RBAM_020830__ 734 CCGTTTCACCTGAACAATTCGGTTTTGCAGAAGGTTCACTAAAGGATATT 783
BSNT_03370___ 784 CAGGTGCAG-TCACCGAAAGAGAGCGC-CTATCTCATTCAGAATATTTTT 831
||.||| || |||.||.||||.||||| || .||||||||||||||||||
RBAM_020830__ 784 CAAGTG-AGTTCATCGGAAGAAAGCGCGCT-CCTCATTCAGAATATTTTT 831
BSNT_03370___ 832 GAAAATAAAAGCAGCAGT--TCCGCTTTATCTATTACGGCTTTTAATGCG 879
|.|||| ||||| .|.|| ||||||.|...||||||.||.||.||||||
RBAM_020830__ 832 GCAAAT-AAAGC-TCCGTCATCCGCTCTGCATATTACCGCCTTAAATGCG 879
BSNT_03370___ 880 GGAGCTGCGATTTACACGGCGGGAATT---ACCGCCTCA-CTGAAGGAAG 925
||.||.||.|||||.|||||.||..|| |.|| | |||||.||||
RBAM_020830__ 880 GGCGCGGCCATTTATACGGCAGGTCTTGCAAACG----ATCTGAAAGAAG 925
BSNT_03370___ 926 GAACGGAGCTGGCGTTAGAGACGATTACAAGCGGAGGCGCTGCC----GC 971
|||||.|....||.|||||..|||||..||.|||| |.|||| |
RBAM_020830__ 926 GAACGAAAACCGCCTTAGAAGCGATTCAAAACGGA---GATGCCAAAAG- 971
BSNT_03370___ 972 GCAGCTTGAACGACTAAAGCAGAAAGAGGAAGAGATCTATGCTTGA 1017
||||||.|||||.||.||.||||||||||||||.||.|||||||||
RBAM_020830__ 972 GCAGCTCGAACGTCTGAAACAGAAAGAGGAAGAAATGTATGCTTGA 1017
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