Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03369 and RBAM_020820

See Amino acid alignment / Visit BSNT_03369 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:34
# Commandline: needle
#    -asequence dna-align/BSNT_03369___trpC.1.9828.seq
#    -bsequence dna-align/RBAM_020820___trpC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03369___trpC-RBAM_020820___trpC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03369___trpC-RBAM_020820___trpC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03369___trpC
# 2: RBAM_020820___trpC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 781
# Identity:     545/781 (69.8%)
# Similarity:   545/781 (69.8%)
# Gaps:          56/781 ( 7.2%)
# Score: 1825.0
# 
#
#=======================================

BSNT_03369___      1 ATGCTTGAAAAAATCATCAAACAAAAGAAAGAAGAAGTGAAAACACTGGT     50
                     ||||||||..|||||||..|.||.||.|||||||||.|.|||.|..|.||
RBAM_020820__      1 ATGCTTGATCAAATCATTCAGCAGAAAAAAGAAGAAATCAAATCCATCGT     50

BSNT_03369___     51 TTTGCCGGTAGAGCAGCCTTTC----------GAGAAACGTTCATTTAAG     90
                     ..|||||     |.|.|||.||          ||||     ||.|||||.
RBAM_020820__     51 GCTGCCG-----GAAACCTGTCAAATTGAACGGAGA-----TCCTTTAAA     90

BSNT_03369___     91 GAGGCGCTGGCAAG--CCCGAATCGGTTTATCGGGTTGATTGCCGAAGTG    138
                     .|.|||||  |.||  ||||||.||.|||||||||.||||||||||||||
RBAM_020820__     91 AAAGCGCT--CCAGAACCCGAACCGTTTTATCGGGCTGATTGCCGAAGTG    138

BSNT_03369___    139 AAGAAAGCATCGCCGTCAAAAGGGCTTATTAAAGAGGATTTTGTGCCTGT    188
                     ||.|||||.||||||||.|||||..|.|||||||||.|||||||.||.|.
RBAM_020820__    139 AAAAAAGCTTCGCCGTCTAAAGGATTGATTAAAGAGCATTTTGTTCCGGA    188

BSNT_03369___    189 GCAGATTGCAATAGACTATGAGGCTGCGAAGGCAGATGCGATTTCCGTTT    238
                     ...||||||....||.|||||.||.||.||.||.||.||..||||.|||.
RBAM_020820__    189 AACGATTGCGGCGGATTATGAAGCGGCTAAAGCCGACGCCCTTTCAGTTC    238

BSNT_03369___    239 TAACAGACACCCCGTTTTTTCAAGGG-GAAAACAGTTATTTAT--CAGAC    285
                     |.||.||.||||..||||||||.||| ||||.||   ||||.|  ||||.
RBAM_020820__    239 TCACGGATACCCGTTTTTTTCAGGGGAGAAATCA---ATTTCTGACAGAT    285

BSNT_03369___    286 GT-----AAAGCGTGCTGTTTCGATTCCTGTACTTAGAAAAGATTTTATT    330
                     ||     |||.||||     ||..||||.||.||.|||||||||||||||
RBAM_020820__    286 GTTAAACAAACCGTG-----TCTCTTCCCGTGCTGAGAAAAGATTTTATT    330

BSNT_03369___    331 CTTGATTCTCTTCAAGTAGAGGAATCAAGAAGAATCGGAGCGGATGCCAT    380
                     .|||||||.|||||.||.||||||||....||.|||||.||.||||||||
RBAM_020820__    331 ATTGATTCCCTTCAGGTGGAGGAATCGTTCAGGATCGGCGCCGATGCCAT    380

BSNT_03369___    381 ATTGTTAATCGGCGAGGTGCTTGATCCCTTACACCTTCATGAATTATATC    430
                     .|||.|.|||||.||.|.|||.||.||.|.|.|.||||||||..|.||||
RBAM_020820__    381 TTTGCTGATCGGGGAAGCGCTGGAACCTTCAGAGCTTCATGAGCTTTATC    430

BSNT_03369___    431 TTGAAGCAGGTGAAAAGGGGATGGACGTGTTAGTGGAGGTTCATGATGCA    480
                     |.|||||..|.||.|||||.||||||||..|.||.||.||.|||||||.|
RBAM_020820__    431 TGGAAGCCCGCGAGAAGGGCATGGACGTTCTCGTTGAAGTCCATGATGAA    480

BSNT_03369___    481 TCAACGCTAGAACAAATATTGAAAGTG-TTCACACCCGACATTCTCGGCG    529
                     .|...|||.||||..||.||..||||| |||| .||.||||||||||||.
RBAM_020820__    481 ACTGTGCTTGAACGGATTTTACAAGTGTTTCA-GCCGGACATTCTCGGCA    529

BSNT_03369___    530 TAAATAATCGAAACCTAAAAACGTTTGAAACATCTGTAAAGCAGACAGAA    579
                     ||||.||.||..||.||||||||||....||.|||||...|||.||.|||
RBAM_020820__    530 TAAACAACCGGGACTTAAAAACGTTCCGTACTTCTGTTTCGCAAACGGAA    579

BSNT_03369___    580 CAAAT--CGCATCTCTCGTTCCGAAAGAATCCTTGCTTGTCAGCGAAAGC    627
                     .||||  ||||  .||.||.|||.|.|..|...||||.||||||||||||
RBAM_020820__    580 AAAATAGCGCA--GCTTGTACCGGACGGCTGTCTGCTGGTCAGCGAAAGC    627

BSNT_03369___    628 GGAATCGGTTCTTTAGAACATTTAAC-----ATTTGTCAATGAACATGGG    672
                     ||.|||||||||||.|     .|.||     |||.|||||..|.||.|||
RBAM_020820__    628 GGCATCGGTTCTTTGG-----CTGACCTGCAATTCGTCAACAAGCACGGG    672

BSNT_03369___    673 GCGCGAGCTGTACTTATCGGTGAATCATTGATGAGACAAACTTCTCAGCG    722
                     ||||..||||||.|..||||.|||||.||.||||||.|...|||.||||.
RBAM_020820__    673 GCGCAGGCTGTATTGGTCGGAGAATCCTTAATGAGAGAGGATTCGCAGCA    722

BSNT_03369___    723 TAAAGCAATCCATGCTTTGTTTGGGGAGTGA    753
                     .||.||.||||..|...||||.|||||||||
RBAM_020820__    723 AAAGGCGATCCGCGGACTGTTCGGGGAGTGA    753


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