Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03368 and RBAM_020810
See
Amino acid alignment /
Visit
BSNT_03368 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:34
# Commandline: needle
# -asequence dna-align/BSNT_03368___trpF.1.9828.seq
# -bsequence dna-align/RBAM_020810___trpF.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03368___trpF-RBAM_020810___trpF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03368___trpF-RBAM_020810___trpF.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03368___trpF
# 2: RBAM_020810___trpF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 703
# Identity: 461/703 (65.6%)
# Similarity: 461/703 (65.6%)
# Gaps: 104/703 (14.8%)
# Score: 1482.5
#
#
#=======================================
BSNT_03368___ 1 GTGAAGAAACCGGCATTAAAATATTGCGGTATTCGGTCACTAAAG---GA 47
.||||.||.||.|...||||.||.|||||.||.||.|| .||| ||
RBAM_020810__ 1 ATGAAAAAGCCTGAGGTAAAGTACTGCGGAATACGATC---GAAGCGTGA 47
BSNT_03368___ 48 TTTGCAGCTTGCGGCGGAATCACAGGCTGATTACCTAGGATTTATTTTTG 97
||...|.||||||||.|..|||...||.|||||.||.|||||||||||||
RBAM_020810__ 48 TTACGAACTTGCGGCAGCTTCAGGAGCGGATTATCTGGGATTTATTTTTG 97
BSNT_03368___ 98 CTGAAAGCAAACGAAAAGTATCTCCGGAAGATGTGAAAAAATGGCTGAA- 146
|.|.|||||||||.|.||||.|.||||..||.||.|..||||| |||
RBAM_020810__ 98 CCGCAAGCAAACGGAGAGTAACGCCGGGTGAGGTCAGGAAATG---GAAA 144
BSNT_03368___ 147 -CCAAGCTCGT----GTCGAAAAACAGGTTGCAGGTGTTTTTGATAATGA 191
..|||.||.| |.|.|.||||| ||..|||||.||||..|||||
RBAM_020810__ 145 GAGAAGGTCCTGACAGACAAGAAACA---TGTCGGTGTATTTGTAAATGA 191
BSNT_03368___ 192 ATCAATAGAGACGATGTCACGTATAGCC-AAGAGCTTGAAGCTCGACGTC 240
|.|.|||||.|..||..|.|..||.||| ..||.||.|.| ||.||||||
RBAM_020810__ 192 AACGATAGAAAACATCGCGCAAATCGCCTCTGATCTGGCA-CTTGACGTC 240
BSNT_03368___ 241 ATTCAGCTTCACGGTGATGAAAAACCGGCGGATG-CTGCTGCTCTTCGCA 289
||.||||||||||||||||||...||.|.||||| |.||.|| ||.||..
RBAM_020810__ 241 ATCCAGCTTCACGGTGATGAATCGCCTGAGGATGCCCGCCGC-CTCCGTC 289
BSNT_03368___ 290 AGCTGACAGGCTGT-------GAAATATGGAAGGCGCTTCACCATCA--- 329
.||| ||| |||||||||||.||||| ||||||
RBAM_020810__ 290 CGCT-------TGTGCGCTCGGAAATATGGAAAGCGCT---CCATCACGG 329
BSNT_03368___ 330 -----------------AGATAACACAACT--CAAGAAATAGCCCGCTTT 360
||||..|.|||.| || ||.||
RBAM_020810__ 330 GGAAGGGACGCTTCGTCAGATGGCTCAATTTGCA--------CCTGC--- 368
BSNT_03368___ 361 AAAGATAATGTTGACGGCTTTGTGATTGATTCATCTGTAAAAGGGTCTAG 410
|||.|||||||.|||.||||||||.||.||||||||....||
RBAM_020810__ 369 --------TGTCGACGGCTATGTCATTGATTCTTCAGTAAAAGGAATGAG 410
BSNT_03368___ 411 AGGCGGAACTGGTGTTGCATTTTCTTGGGAATGTGT-------TCCGGAA 453
||||||.||.||..|.||.|||||.||||...|||| |.|.|||
RBAM_020810__ 411 AGGCGGCACGGGAATCGCGTTTTCATGGGCTCGTGTCCCCTTGTACCGAA 460
BSNT_03368___ 454 TATCAGCAGGCGGCT----ATTGGTAAA----CGCTGCTTTATCGCTGGC 495
|||| |||| || |.||| |||||.||||||||.|||
RBAM_020810__ 461 ----AGCA---GGCTCAAAAT--GCAAACAAGCGCTGTTTTATCGCGGGC 501
BSNT_03368___ 496 GGCGTGAATCCGGATAGCATCACCGGCCTATTGAAATGGCAGCCAGAAGG 545
|||||.|||||.||.|..||.||||||.||.|||.||.||..||....||
RBAM_020810__ 502 GGCGTTAATCCTGAAACGATTACCGGCTTACTGAGATCGCGTCCGTGCGG 551
BSNT_03368___ 546 AATTGACCTTGCCAGCGGAATTGAAAAAAACGGACAAAAAGATCAGAATC 595
.||.||.||||||||||||||||||||||||||||||||.|||||.|..|
RBAM_020810__ 552 TATAGATCTTGCCAGCGGAATTGAAAAAAACGGACAAAAGGATCAAACAC 601
BSNT_03368___ 596 TGATGAGTCTTTTAGAAGAAAGGATGAACCGATATGTATCCATATCCGAA 645
||||..|.||||||||||||||||||||||..|||||||||||||||.||
RBAM_020810__ 602 TGATCCGGCTTTTAGAAGAAAGGATGAACCACTATGTATCCATATCCAAA 651
BSNT_03368___ 646 TGA 648
|||
RBAM_020810__ 652 TGA 654
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.