Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03365 and RBAM_020790

See Amino acid alignment / Visit BSNT_03365 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:34
# Commandline: needle
#    -asequence dna-align/BSNT_03365___trpA.1.9828.seq
#    -bsequence dna-align/RBAM_020790___trpA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03365___trpA-RBAM_020790___trpA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03365___trpA-RBAM_020790___trpA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03365___trpA
# 2: RBAM_020790___trpA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 827
# Identity:     616/827 (74.5%)
# Similarity:   616/827 (74.5%)
# Gaps:          52/827 ( 6.3%)
# Score: 2218.5
# 
#
#=======================================

BSNT_03365___      1 ATGTTTAAATTG-GATCTTCAACCAACAGAAAAATTGTTTATCCCGTTTA     49
                     ||||||||..|| ||..||       |.||||||||.||||||||.||||
RBAM_020790__      1 ATGTTTAATCTGCGAGATT-------CTGAAAAATTATTTATCCCTTTTA     43

BSNT_03365___     50 TTACGGCGGGCGATCCAGTTCCTGAGGTTTCGATTGAACTGGCGAAGTCA     99
                     |||||||.||||||||..|||||||..||||..||||.|||||.|..|||
RBAM_020790__     44 TTACGGCTGGCGATCCGCTTCCTGACATTTCTGTTGAGCTGGCAATATCA     93

BSNT_03365___    100 CTCCAAAAAGCAGGCGCCACAGCATTGGAGCTTGGTGTTGCATACTCTGA    149
                     .|.||.||.|||||||||.|.||..|.||..|.||.|||.|.|||.|.||
RBAM_020790__     94 TTGCAGAATGCAGGCGCCTCTGCCCTTGAAATCGGCGTTCCTTACACAGA    143

BSNT_03365___    150 CCCGCTTGCAGACGGTCCGGTGATCCAGAGGGCTTCAAAGCGGGCACTTG    199
                     .||||||||.|||||.||.||.||.||..||||||||||.|||||.||.|
RBAM_020790__    144 TCCGCTTGCGGACGGACCCGTCATACAACGGGCTTCAAAACGGGCTCTGG    193

BSNT_03365___    200 ATCAAGGAATGAATATCGTAAAGGCAATCGAATTAGGCGGAGAAATGAAA    249
                     |..|.|||||||||||||||||.|||||.|||.|.|||||..||||||||
RBAM_020790__    194 AAAACGGAATGAATATCGTAAAAGCAATTGAACTTGGCGGCAAAATGAAA    243

BSNT_03365___    250 AAAAACGGAGTGAATATTCCGATTATCCTCTTTACGTATTATAATCCTGT    299
                     ||||||||.||..|||||||.|||||||||||||||||||||||||||||
RBAM_020790__    244 AAAAACGGCGTTCATATTCCAATTATCCTCTTTACGTATTATAATCCTGT    293

BSNT_03365___    300 GTTACAATT-GAACAAAGAATACTTTTTCGCTTTACTGCAGGAAAATCAT    348
                     ||||||||| ||| |||||||||||||||||||||||||.||||||..|.
RBAM_020790__    294 GTTACAATTAGAA-AAAGAATACTTTTTCGCTTTACTGCGGGAAAACGAC    342

BSNT_03365___    349 ATTGACGGTCTGCTTGTTCCGGATCTGCCACTAGAAGAAAGCAACAGCC-    397
                     ||.||||||||||||||.||.||.||.|||.||||.||||||    ||| 
RBAM_020790__    343 ATAGACGGTCTGCTTGTACCCGACCTTCCATTAGAGGAAAGC----GCCC    388

BSNT_03365___    398 ---TTCAAGAGGA-ATGTAAAAGCCATGAGGTGA------CGTATATTTC    437
                        |.||| |.|| |||.||||      |||.||      |.|||||.||
RBAM_020790__    389 TTTTGCAA-ATGACATGCAAAA------AGGAGAACATCGCTTATATCTC    431

BSNT_03365___    438 TTTGGTTGCGCCGACAAGCGAAAGCCGTTTGAAAACCATTATTGAACAAG    487
                     ..||||||||||||||||.|||..|||||||||||..||||.||||||.|
RBAM_020790__    432 ACTGGTTGCGCCGACAAGTGAAGACCGTTTGAAAATAATTACTGAACAGG    481

BSNT_03365___    488 CCGAGGGCTTCGTCTACTGTGTGTCTTCTCTGGGTGTGACCGGTGTCCGC    537
                     ||...|||||.||.||.|||||.||.|||.|.||.|||||.||.||.|||
RBAM_020790__    482 CCTGCGGCTTTGTGTATTGTGTATCCTCTTTAGGAGTGACGGGCGTACGC    531

BSNT_03365___    538 AATGAGTTCAATTCATCCGTGTACCCGTTCATTCGGACAGTG-AAGAATC    586
                     |..||.|||.||.|.||.||.|||.|.|||||.||.|..||| |||||| 
RBAM_020790__    532 AGCGAATTCGATCCGTCTGTATACTCTTTCATACGTAAGGTGAAAGAAT-    580

BSNT_03365___    587 TCAGCACTGTTCCGGTCGCTGTAGGGTTCGGTATATCAAACCGTGAACAG    636
                     |||||.||||||||||.||.||.||.||.||.||.||||||||..|||||
RBAM_020790__    581 TCAGCTCTGTTCCGGTGGCGGTCGGTTTTGGCATTTCAAACCGCAAACAG    630

BSNT_03365___    637 GTCATAA--AGATGAATGAAATTAGTGACGGTGTCGTAGTGGGAAGTGCG    684
                     ||  |.|  .||||||||||||...||||||||||||.||.||.||.|||
RBAM_020790__    631 GT--TGACGGGATGAATGAAATATCTGACGGTGTCGTTGTCGGCAGCGCG    678

BSNT_03365___    685 CTCGTCAGAAAAATAGAAGA-ATTAAAGGAC-CGGCT----CATCAGCGC    728
                     ||.||||.||||||.||||| .|||||  || ..|||    .|||    |
RBAM_020790__    679 CTTGTCAAAAAAATTGAAGAGCTTAAA--ACAAAGCTTGTGAATC----C    722

BSNT_03365___    729 TGAAACGAGAAATCAGGCGCTGCAGGAGTTTGAGGATTATGCAATGGCGT    778
                     .|.|||.|||..|.|.|||||.|..||.|||||.||.||.||||.|.|||
RBAM_020790__    723 CGGAACAAGAGCTGATGCGCTTCTTGAATTTGAAGAATACGCAAAGACGT    772

BSNT_03365___    779 TTAG-CGGCTTGTACAGTTTAAAATGA    804
                     |..| ||.| ||||||||.||||||||
RBAM_020790__    773 TCGGACGAC-TGTACAGTGTAAAATGA    798


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_03365 and RBAM_020790

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
