Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03360 and RBAM_020750
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:33
# Commandline: needle
# -asequence dna-align/BSNT_03360___ypiA.1.9828.seq
# -bsequence dna-align/RBAM_020750___ypiA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03360___ypiA-RBAM_020750___ypiA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03360___ypiA-RBAM_020750___ypiA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03360___ypiA
# 2: RBAM_020750___ypiA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1283
# Identity: 1004/1283 (78.3%)
# Similarity: 1004/1283 (78.3%)
# Gaps: 22/1283 ( 1.7%)
# Score: 3895.5
#
#
#=======================================
BSNT_03360___ 1 TTGAATACATTGATTCAAGAAGCCATAAAATTAGTTGAAGCAGGTGAAAC 50
||||||||||||||.|||||||||||||||||||||||||||||||||||
RBAM_020750__ 1 TTGAATACATTGATCCAAGAAGCCATAAAATTAGTTGAAGCAGGTGAAAC 50
BSNT_03360___ 51 AGAAAAAGGCCTCAACACGCTCTCGAAGGCTGAAAAACAGCTGCATGATG 100
.|||||.||.|||||..||||.||.||.|||||||..|||||.|||||.|
RBAM_020750__ 51 CGAAAAGGGACTCAAAGCGCTTTCAAAAGCTGAAACGCAGCTTCATGACG 100
BSNT_03360___ 101 AAGATAAAGCCATTGCAGCCCAGCTTTATTACGAGTGGGGCGATGTAGAA 150
||||.||||||||||||||||||||.||.||.||.|||||..|.|..|||
RBAM_020750__ 101 AAGACAAAGCCATTGCAGCCCAGCTCTACTATGAATGGGGAAACGCCGAA 150
BSNT_03360___ 151 AAAGCAATTTCACTGATTAGTGATCTACATGATTTATATCCAAATGAAAC 200
|||||..|..|.|||||.||||||||.|||||..|.|||||..||||..|
RBAM_020750__ 151 AAAGCGTTAGCGCTGATCAGTGATCTGCATGACCTTTATCCGGATGAGTC 200
BSNT_03360___ 201 AGAACTGACGAATTTCTACGCTGAACTTTTAATAGATATTGACGAAGAAG 250
.||.|||||||||||.|||||.|||.|.||||||||||||||.|||||||
RBAM_020750__ 201 TGAGCTGACGAATTTTTACGCCGAATTGTTAATAGATATTGATGAAGAAG 250
BSNT_03360___ 251 AAAAAGCCCTCGCTGTGCTGGAGACTAT---TCCGGAAACAGATCCATCA 297
|||||||.||.|..|||||||||||.|| |||||| |||.||.||.
RBAM_020750__ 251 AAAAAGCTCTAGAGGTGCTGGAGACGATTTCTCCGGA---AGACCCGTCT 297
BSNT_03360___ 298 TATCCGGAAAGTTTGCTGCTTATGGCGGATCTTTATCAGATGCAGGGGTT 347
||..|||||||..|.||..|.|||||.|||||.||||||||||||||.||
RBAM_020750__ 298 TACGCGGAAAGCCTTCTTTTAATGGCTGATCTGTATCAGATGCAGGGCTT 347
BSNT_03360___ 348 ATTCGAAGTCAGTGAACAAAAGCTTTTACAGGCAAAGTCCATTCTGGACA 397
|||.|||||.|||||.||||||||.||||||||.||.||.||..| |||
RBAM_020750__ 348 ATTTGAAGTAAGTGAGCAAAAGCTGTTACAGGCGAAATCGATGTT--ACA 395
BSNT_03360___ 398 --ATGAACCTGTTATTGATTTTGCACTGGGAGAACTTTACTTTGCTCAGG 445
|||||||||||||||||||.||.|||||.|||.|.|||||..||||||
RBAM_020750__ 396 AGATGAACCTGTTATTGATTTCGCTCTGGGGGAATTATACTTCACTCAGG 445
BSNT_03360___ 446 GAGCCTATGCAAAAGCGGTTCAATATTTTAAAACAACGGCTGAGGAGCAG 495
||.|.||.||||||||.||.|..||.|.|.||...|||||..|.||.|.|
RBAM_020750__ 446 GATCATACGCAAAAGCCGTACCTTACTATGAAGAGACGGCAAAAGAACGG 495
BSNT_03360___ 496 AGTGAGATCGGAGGCGTTAATGTCCATCAAAGACTGGCAGAATCGTTAAG 545
...||.|||||.|||||.|||||.|||||.||.||.||.||.||.||.||
RBAM_020750__ 496 CACGAAATCGGCGGCGTAAATGTTCATCAGAGGCTTGCTGAGTCATTGAG 545
BSNT_03360___ 546 TGCCTCAGGTGAATTTGAGGATGCCATTCCATGGTATGAGAAAGCTGTCG 595
.||..|.||||||||||||||.||.|||.||||||||||.|||||.|..|
RBAM_020750__ 546 CGCGGCGGGTGAATTTGAGGAAGCGATTTCATGGTATGAAAAAGCGGCGG 595
BSNT_03360___ 596 ATGAGAATCCTGATCCTAATACGATTTTCGGCTATGGTTTTACAGCCTTA 645
..||..||.|.||.||.||||||||||||||.||.||.||.|||||||..
RBAM_020750__ 596 CAGAACATACAGAACCGAATACGATTTTCGGGTACGGGTTCACAGCCTAT 645
BSNT_03360___ 646 CAGGCGGGGCTTGTGAAAACAGCTATTAAGCAGCTGTCTGATTTAAAGGA 695
||||||||..|.||.||||||||.||.||||||||||||||||||||.|.
RBAM_020750__ 646 CAGGCGGGAATGGTCAAAACAGCCATCAAGCAGCTGTCTGATTTAAAAGG 695
BSNT_03360___ 696 GCTTGATCCATCTTATACTTCACTTTATATGCCGCTCTCGAAAAGCTATG 745
|||||||||.||.|||.|.||.||||||||||||||..|.||||||||.|
RBAM_020750__ 696 GCTTGATCCTTCCTATTCATCGCTTTATATGCCGCTTGCAAAAAGCTACG 745
BSNT_03360___ 746 AAGCTGAAGGGGTGTATGAAGAGGCATTAAAAACGGCAAAAGAGGGGATC 795
|.||.|||||..||||||||||.|||||||||||.||.|||||.||.||.
RBAM_020750__ 746 AGGCAGAAGGCATGTATGAAGATGCATTAAAAACCGCTAAAGAAGGTATT 795
BSNT_03360___ 796 AGATATGATGAATATAACAAAGAACTTTTCCTTTATGCCGCCAAAATGGC 845
|..||.||||||||.||.|||||.|||||.||.|||||.||.||||||||
RBAM_020750__ 796 ACTTACGATGAATACAATAAAGAGCTTTTTCTCTATGCGGCGAAAATGGC 845
BSNT_03360___ 846 CTTGAAAATCGGGAAGTCA--GAAGAG---GGGAAAAAGCTGCTTCAGGA 890
.||.||..|||| || |||||| ||.||||||||.||||||||
RBAM_020750__ 846 GTTAAAGCTCGG-----CAGCGAAGAGGAAGGCAAAAAGCTTCTTCAGGA 890
BSNT_03360___ 891 GGCGCTTGCGCTTGATCCGGGCTTTGTCGAGGCGCTTCATACACTTCTTG 940
.|||||.|||||.||||||||.|..||.||.|||||.|||||.|||.|.|
RBAM_020750__ 891 AGCGCTGGCGCTCGATCCGGGTTACGTGGAAGCGCTCCATACGCTTTTAG 940
BSNT_03360___ 941 CCGTGTATCACAAAGAAG-AGGATTATGATCAGATCATTGATCTTATTCA 989
||||.|||||.||||||| |.|.|| |||..||||.||||||||.|||||
RBAM_020750__ 941 CCGTCTATCATAAAGAAGAAAGCTT-TGAAGAGATTATTGATCTGATTCA 989
BSNT_03360___ 990 AGAGGTTCGAAGCTACGGTGAAGAAGATCCTAAATACAATTGGTATCTTG 1039
.||.||.||..|||||||.|||||||||||.|||||||||||||||.|.|
RBAM_020750__ 990 GGAAGTCCGCGGCTACGGAGAAGAAGATCCGAAATACAATTGGTATTTGG 1039
BSNT_03360___ 1040 CAAGCGCATATACTGAATTAGAGCAATACGAGGAAGCAAAACAATCCTTT 1089
|..|.||.|||||.|...|.||||||||||..|||||.|||.||..|||.
RBAM_020750__ 1040 CGGGTGCTTATACAGGCCTTGAGCAATACGCTGAAGCGAAAAAAAGCTTC 1089
BSNT_03360___ 1090 GAGGCTGCCTATCTTCATTACCGGGAGGATAGAGATTTCTTATATGAATA 1139
||.|||||.|||||.|||||.|.|||.|||.|.|||||||||||||||||
RBAM_020750__ 1090 GAAGCTGCGTATCTCCATTATCAGGATGATCGGGATTTCTTATATGAATA 1139
BSNT_03360___ 1140 CGCAAGCTTCCTATTAGAAGAAGGTCTTCAAAAAGAAGCGCTGCCGCTTT 1189
|||...||||.||||.|||||.|||||.||.|||||||||||||||||||
RBAM_020750__ 1140 CGCTCACTTCTTATTGGAAGAGGGTCTCCAGAAAGAAGCGCTGCCGCTTT 1189
BSNT_03360___ 1190 TGAAAAAGGTTCTTGAAATGGACGGAGCCAATGAAGAGCTTGAAGAAACG 1239
|.|||.|.||.|||..||||||.|||.|.||.|||||||||||||||||.
RBAM_020750__ 1190 TAAAACAAGTGCTTTCAATGGATGGAACAAACGAAGAGCTTGAAGAAACA 1239
BSNT_03360___ 1240 ATTTTGCGAATCGAGGATGAATTTTCTAGATAA 1272
||.||.||.||.|||||||||||||..||||||
RBAM_020750__ 1240 ATCTTACGGATAGAGGATGAATTTTTAAGATAA 1272
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