Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03360 and RBAM_020750

See Amino acid alignment / Visit BSNT_03360 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:33
# Commandline: needle
#    -asequence dna-align/BSNT_03360___ypiA.1.9828.seq
#    -bsequence dna-align/RBAM_020750___ypiA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03360___ypiA-RBAM_020750___ypiA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03360___ypiA-RBAM_020750___ypiA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03360___ypiA
# 2: RBAM_020750___ypiA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1283
# Identity:    1004/1283 (78.3%)
# Similarity:  1004/1283 (78.3%)
# Gaps:          22/1283 ( 1.7%)
# Score: 3895.5
# 
#
#=======================================

BSNT_03360___      1 TTGAATACATTGATTCAAGAAGCCATAAAATTAGTTGAAGCAGGTGAAAC     50
                     ||||||||||||||.|||||||||||||||||||||||||||||||||||
RBAM_020750__      1 TTGAATACATTGATCCAAGAAGCCATAAAATTAGTTGAAGCAGGTGAAAC     50

BSNT_03360___     51 AGAAAAAGGCCTCAACACGCTCTCGAAGGCTGAAAAACAGCTGCATGATG    100
                     .|||||.||.|||||..||||.||.||.|||||||..|||||.|||||.|
RBAM_020750__     51 CGAAAAGGGACTCAAAGCGCTTTCAAAAGCTGAAACGCAGCTTCATGACG    100

BSNT_03360___    101 AAGATAAAGCCATTGCAGCCCAGCTTTATTACGAGTGGGGCGATGTAGAA    150
                     ||||.||||||||||||||||||||.||.||.||.|||||..|.|..|||
RBAM_020750__    101 AAGACAAAGCCATTGCAGCCCAGCTCTACTATGAATGGGGAAACGCCGAA    150

BSNT_03360___    151 AAAGCAATTTCACTGATTAGTGATCTACATGATTTATATCCAAATGAAAC    200
                     |||||..|..|.|||||.||||||||.|||||..|.|||||..||||..|
RBAM_020750__    151 AAAGCGTTAGCGCTGATCAGTGATCTGCATGACCTTTATCCGGATGAGTC    200

BSNT_03360___    201 AGAACTGACGAATTTCTACGCTGAACTTTTAATAGATATTGACGAAGAAG    250
                     .||.|||||||||||.|||||.|||.|.||||||||||||||.|||||||
RBAM_020750__    201 TGAGCTGACGAATTTTTACGCCGAATTGTTAATAGATATTGATGAAGAAG    250

BSNT_03360___    251 AAAAAGCCCTCGCTGTGCTGGAGACTAT---TCCGGAAACAGATCCATCA    297
                     |||||||.||.|..|||||||||||.||   ||||||   |||.||.||.
RBAM_020750__    251 AAAAAGCTCTAGAGGTGCTGGAGACGATTTCTCCGGA---AGACCCGTCT    297

BSNT_03360___    298 TATCCGGAAAGTTTGCTGCTTATGGCGGATCTTTATCAGATGCAGGGGTT    347
                     ||..|||||||..|.||..|.|||||.|||||.||||||||||||||.||
RBAM_020750__    298 TACGCGGAAAGCCTTCTTTTAATGGCTGATCTGTATCAGATGCAGGGCTT    347

BSNT_03360___    348 ATTCGAAGTCAGTGAACAAAAGCTTTTACAGGCAAAGTCCATTCTGGACA    397
                     |||.|||||.|||||.||||||||.||||||||.||.||.||..|  |||
RBAM_020750__    348 ATTTGAAGTAAGTGAGCAAAAGCTGTTACAGGCGAAATCGATGTT--ACA    395

BSNT_03360___    398 --ATGAACCTGTTATTGATTTTGCACTGGGAGAACTTTACTTTGCTCAGG    445
                       |||||||||||||||||||.||.|||||.|||.|.|||||..||||||
RBAM_020750__    396 AGATGAACCTGTTATTGATTTCGCTCTGGGGGAATTATACTTCACTCAGG    445

BSNT_03360___    446 GAGCCTATGCAAAAGCGGTTCAATATTTTAAAACAACGGCTGAGGAGCAG    495
                     ||.|.||.||||||||.||.|..||.|.|.||...|||||..|.||.|.|
RBAM_020750__    446 GATCATACGCAAAAGCCGTACCTTACTATGAAGAGACGGCAAAAGAACGG    495

BSNT_03360___    496 AGTGAGATCGGAGGCGTTAATGTCCATCAAAGACTGGCAGAATCGTTAAG    545
                     ...||.|||||.|||||.|||||.|||||.||.||.||.||.||.||.||
RBAM_020750__    496 CACGAAATCGGCGGCGTAAATGTTCATCAGAGGCTTGCTGAGTCATTGAG    545

BSNT_03360___    546 TGCCTCAGGTGAATTTGAGGATGCCATTCCATGGTATGAGAAAGCTGTCG    595
                     .||..|.||||||||||||||.||.|||.||||||||||.|||||.|..|
RBAM_020750__    546 CGCGGCGGGTGAATTTGAGGAAGCGATTTCATGGTATGAAAAAGCGGCGG    595

BSNT_03360___    596 ATGAGAATCCTGATCCTAATACGATTTTCGGCTATGGTTTTACAGCCTTA    645
                     ..||..||.|.||.||.||||||||||||||.||.||.||.|||||||..
RBAM_020750__    596 CAGAACATACAGAACCGAATACGATTTTCGGGTACGGGTTCACAGCCTAT    645

BSNT_03360___    646 CAGGCGGGGCTTGTGAAAACAGCTATTAAGCAGCTGTCTGATTTAAAGGA    695
                     ||||||||..|.||.||||||||.||.||||||||||||||||||||.|.
RBAM_020750__    646 CAGGCGGGAATGGTCAAAACAGCCATCAAGCAGCTGTCTGATTTAAAAGG    695

BSNT_03360___    696 GCTTGATCCATCTTATACTTCACTTTATATGCCGCTCTCGAAAAGCTATG    745
                     |||||||||.||.|||.|.||.||||||||||||||..|.||||||||.|
RBAM_020750__    696 GCTTGATCCTTCCTATTCATCGCTTTATATGCCGCTTGCAAAAAGCTACG    745

BSNT_03360___    746 AAGCTGAAGGGGTGTATGAAGAGGCATTAAAAACGGCAAAAGAGGGGATC    795
                     |.||.|||||..||||||||||.|||||||||||.||.|||||.||.||.
RBAM_020750__    746 AGGCAGAAGGCATGTATGAAGATGCATTAAAAACCGCTAAAGAAGGTATT    795

BSNT_03360___    796 AGATATGATGAATATAACAAAGAACTTTTCCTTTATGCCGCCAAAATGGC    845
                     |..||.||||||||.||.|||||.|||||.||.|||||.||.||||||||
RBAM_020750__    796 ACTTACGATGAATACAATAAAGAGCTTTTTCTCTATGCGGCGAAAATGGC    845

BSNT_03360___    846 CTTGAAAATCGGGAAGTCA--GAAGAG---GGGAAAAAGCTGCTTCAGGA    890
                     .||.||..||||     ||  ||||||   ||.||||||||.||||||||
RBAM_020750__    846 GTTAAAGCTCGG-----CAGCGAAGAGGAAGGCAAAAAGCTTCTTCAGGA    890

BSNT_03360___    891 GGCGCTTGCGCTTGATCCGGGCTTTGTCGAGGCGCTTCATACACTTCTTG    940
                     .|||||.|||||.||||||||.|..||.||.|||||.|||||.|||.|.|
RBAM_020750__    891 AGCGCTGGCGCTCGATCCGGGTTACGTGGAAGCGCTCCATACGCTTTTAG    940

BSNT_03360___    941 CCGTGTATCACAAAGAAG-AGGATTATGATCAGATCATTGATCTTATTCA    989
                     ||||.|||||.||||||| |.|.|| |||..||||.||||||||.|||||
RBAM_020750__    941 CCGTCTATCATAAAGAAGAAAGCTT-TGAAGAGATTATTGATCTGATTCA    989

BSNT_03360___    990 AGAGGTTCGAAGCTACGGTGAAGAAGATCCTAAATACAATTGGTATCTTG   1039
                     .||.||.||..|||||||.|||||||||||.|||||||||||||||.|.|
RBAM_020750__    990 GGAAGTCCGCGGCTACGGAGAAGAAGATCCGAAATACAATTGGTATTTGG   1039

BSNT_03360___   1040 CAAGCGCATATACTGAATTAGAGCAATACGAGGAAGCAAAACAATCCTTT   1089
                     |..|.||.|||||.|...|.||||||||||..|||||.|||.||..|||.
RBAM_020750__   1040 CGGGTGCTTATACAGGCCTTGAGCAATACGCTGAAGCGAAAAAAAGCTTC   1089

BSNT_03360___   1090 GAGGCTGCCTATCTTCATTACCGGGAGGATAGAGATTTCTTATATGAATA   1139
                     ||.|||||.|||||.|||||.|.|||.|||.|.|||||||||||||||||
RBAM_020750__   1090 GAAGCTGCGTATCTCCATTATCAGGATGATCGGGATTTCTTATATGAATA   1139

BSNT_03360___   1140 CGCAAGCTTCCTATTAGAAGAAGGTCTTCAAAAAGAAGCGCTGCCGCTTT   1189
                     |||...||||.||||.|||||.|||||.||.|||||||||||||||||||
RBAM_020750__   1140 CGCTCACTTCTTATTGGAAGAGGGTCTCCAGAAAGAAGCGCTGCCGCTTT   1189

BSNT_03360___   1190 TGAAAAAGGTTCTTGAAATGGACGGAGCCAATGAAGAGCTTGAAGAAACG   1239
                     |.|||.|.||.|||..||||||.|||.|.||.|||||||||||||||||.
RBAM_020750__   1190 TAAAACAAGTGCTTTCAATGGATGGAACAAACGAAGAGCTTGAAGAAACA   1239

BSNT_03360___   1240 ATTTTGCGAATCGAGGATGAATTTTCTAGATAA   1272
                     ||.||.||.||.|||||||||||||..||||||
RBAM_020750__   1240 ATCTTACGGATAGAGGATGAATTTTTAAGATAA   1272


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