Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03353 and RBAM_020690
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:33
# Commandline: needle
# -asequence dna-align/BSNT_03353___ypjA.1.9828.seq
# -bsequence dna-align/RBAM_020690___ypjA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03353___ypjA-RBAM_020690___ypjA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03353___ypjA-RBAM_020690___ypjA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03353___ypjA
# 2: RBAM_020690___ypjA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 651
# Identity: 455/651 (69.9%)
# Similarity: 455/651 (69.9%)
# Gaps: 78/651 (12.0%)
# Score: 1623.0
#
#
#=======================================
BSNT_03353___ 1 ------------------------------------GTGAAATGG-TTTC 13
.|||..||| ||||
RBAM_020690__ 1 ATGATACATACTTTTTACGGACTGAGAGTTGATGGTATGAGGTGGATTTC 50
BSNT_03353___ 14 AATATGTATTAGG---GCAGCGGCCGATGCTTATTCTTG-TCTTAGCCAT 59
.|||.|.||||| || ||||| ||||||.|.|||| |||| |||.|
RBAM_020690__ 51 -TTATCTTTTAGGGTTGC-GCGGC--ATGCTTCTGCTTGTTCTT-GCCGT 95
BSNT_03353___ 60 TAATTTTCTGGGAACGGTTTACGGCTACTATTGGTACTTGCCGCAGCTTT 109
|||||||.|.||.|||||.||||||||.||||||||..||||.||||||.
RBAM_020690__ 96 TAATTTTATCGGTACGGTGTACGGCTATTATTGGTATGTGCCTCAGCTTG 145
BSNT_03353___ 110 TGGAGACACCGGCCCGTTTCCTGATTTTTGTTCCGGACAGTCCGACAGCA 159
.|||.||.|||..|||.||.|||||.|||||.||.|||||.|||||.||.
RBAM_020690__ 146 CGGACACGCCGTTCCGATTTCTGATATTTGTGCCTGACAGCCCGACGGCG 195
BSNT_03353___ 160 ACGTTTTTCTTTCTGTTTGTGCTGCTTGCCTTTCTCATGAAACGGAATGC 209
|||||||||||.|||||.|||||.||.||.|||||||||..|.|.||.||
RBAM_020690__ 196 ACGTTTTTCTTCCTGTTCGTGCTTCTGGCATTTCTCATGGGAAGAAACGC 245
BSNT_03353___ 210 TCCGCTCTTTGAGGCGCTTGCGCTAGTAACCCTCGTAAAGTATGGCCTAT 259
.|||||.|||||.|||||.||.||.||||||||.|||||.||.||.||.|
RBAM_020690__ 246 GCCGCTGTTTGAAGCGCTGGCTCTTGTAACCCTTGTAAAATACGGGCTGT 295
BSNT_03353___ 260 GGGCGGTGGCTATGAATTTTCTTGTGCTTG-CAGTAACTGGTG-ACTTGC 307
|||||||.|..||||||.|..|||||||.| || ||.|||.| |..|||
RBAM_020690__ 296 GGGCGGTCGGAATGAATGTCTTTGTGCTGGTCA--AAATGGGGCAGATGC 343
BSNT_03353___ 308 CGTGGGAGGGCTACATGCTAATTGCTTCGCATTTTGCAATGGCTGTTCAA 357
|.|||||.||.||||||||.||||||||.||||||||.|||||.||||||
RBAM_020690__ 344 CTTGGGAAGGGTACATGCTGATTGCTTCACATTTTGCCATGGCCGTTCAA 393
BSNT_03353___ 358 GGCGTATTATACAGTCCGTATTTTCGTTT----TTCATTTTGGCATCTTG 403
|||||.||||||||.|||||||||||.|| ||.| |||||||||
RBAM_020690__ 394 GGCGTTTTATACAGCCCGTATTTTCGGTTCCGGTTAA----GGCATCTTG 439
BSNT_03353___ 404 CAATTGCTGCAGTCTGGACACTGCATAACGATGTCATTGACTA-CTTGTT 452
|..||||.||.||.|||||.||.|||||.|||||||||||.|| ||| ||
RBAM_020690__ 440 CCGTTGCCGCTGTTTGGACGCTTCATAATGATGTCATTGATTATCTT-TT 488
BSNT_03353___ 453 TGATATGATGCCGCGGTATTCAATGCTTTCTGATTATATGACTGAAATAG 502
.|..||||||||.||.||.||||||||...|||.||||||...||.||.|
RBAM_020690__ 489 CGGCATGATGCCCCGCTACTCAATGCTCAATGACTATATGCAAGAGATCG 538
BSNT_03353___ 503 GATACGGAACATTTTGGCTAAGCATCTTCTCAATCGCGCTTGCTTACTTT 552
|.||.|..|||||.|||||.|||||.||.|||.|||..|||||.||||.|
RBAM_020690__ 539 GCTATGCTACATTCTGGCTGAGCATATTTTCACTCGGCCTTGCATACTAT 588
BSNT_03353___ 553 CTTGTGGTCTCAAAAAAGCAAACG----AAGCTTGA-----GCTGATGTA 593
.|.|||.|.||.||| |.||| |||||||| .||||
RBAM_020690__ 589 TTGGTGATTTCTAAA----AGACGGATAAAGCTTGACTTACACTGA---- 630
BSNT_03353___ 594 A 594
RBAM_020690__ 630 - 630
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