Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03350 and RBAM_020660
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:32
# Commandline: needle
# -asequence dna-align/BSNT_03350.1.9828.seq
# -bsequence dna-align/RBAM_020660___ypjC.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03350-RBAM_020660___ypjC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03350-RBAM_020660___ypjC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03350
# 2: RBAM_020660___ypjC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 888
# Identity: 700/888 (78.8%)
# Similarity: 700/888 (78.8%)
# Gaps: 30/888 ( 3.4%)
# Score: 2751.5
#
#
#=======================================
BSNT_03350 1 ATGCTTGGAGAAATTAGATTAAAAAACATATTTTTTATTTTAATCGGAGC 50
||||||||||||||.|||.|.||||||||.|..||||||||||||||.||
RBAM_020660__ 1 ATGCTTGGAGAAATCAGAATCAAAAACATTTGCTTTATTTTAATCGGCGC 50
BSNT_03350 51 GGCAATTTTTTCATTTGGCTTGGTTCATTTCAATATGCAGAACAATCTGG 100
.||..||||||||||.||..|||||||.||.|||||||||||||||.|||
RBAM_020660__ 51 CGCTGTTTTTTCATTCGGACTGGTTCACTTTAATATGCAGAACAATTTGG 100
BSNT_03350 101 CTGAGGGCGGTTTTACAGGTATTACACTTTTGCTT---TATGCCCTTTTC 147
|.||.|||||.|||||.||.|||||.| ||||| |||||..|.|||
RBAM_020660__ 101 CGGAAGGCGGATTTACCGGCATTACGC---TGCTTTTATATGCGTTATTC 147
BSNT_03350 148 CACATCAGCCCCTCTATCTCGAACCTGGTATTGAACATCCCGATTTTTTT 197
|||||||||||.|||||.||.|||||||||||||||||.||.||.|||||
RBAM_020660__ 148 CACATCAGCCCTTCTATTTCCAACCTGGTATTGAACATTCCTATCTTTTT 197
BSNT_03350 198 TATTGGCTGGCGTTTGCTCGGCAGGACAATGTTTGTTTATACCCTTGTCG 247
.||.|||||||||.||||||||.||||.||||||||.||||||||..|||
RBAM_020660__ 198 CATCGGCTGGCGTATGCTCGGCCGGACGATGTTTGTCTATACCCTGATCG 247
BSNT_03350 248 GCACTGTAGC-CTTGTCTTTGTTCCTCAGCATCTTTCAGCGATATGAAAT 296
||||.||..| ||| |||.|.||.||.||..|.||||||||.||.|||||
RBAM_020660__ 248 GCACCGTCTCTCTT-TCTGTTTTTCTGAGTGTTTTTCAGCGTTACGAAAT 296
BSNT_03350 297 CCATATGCCCCT-TCAGCACGACTTAGCGCTCGCCGCTTTATTTGCCGGC 345
.||||||||.|| || |||.||.||||||||.|||||.|||||.|||||.
RBAM_020660__ 297 TCATATGCCGCTGTC-GCATGATTTAGCGCTGGCCGCCTTATTCGCCGGT 345
BSNT_03350 346 GTATTCATCGGAGCCGGACTGGGTATTATTTTTAAGTTCGGCGGTACGAC 395
|||||.|||||.||.||.||.||.|||||||||||.|.||||||.|||||
RBAM_020660__ 346 GTATTTATCGGCGCGGGTCTCGGCATTATTTTTAAATACGGCGGCACGAC 395
BSNT_03350 396 AGGCGGTGTTGATATCATCG-CACGTTTAGTGAATAAGTATTTTGGGATC 444
.|||||.||.|||||||||| ||.|.|.| |.||.||.|.|||.||.|||
RBAM_020660__ 396 GGGCGGGGTCGATATCATCGCCAGGCTGA-TCAACAAATTTTTCGGAATC 444
BSNT_03350 445 CCGATGGGCAGAACGATGTTTGCTTTCGATGCCTGCGTCATCATTTTG-- 492
|||||||||.|.|||||||||||.||.||.|||||.| ||||||||
RBAM_020660__ 445 CCGATGGGCCGGACGATGTTTGCCTTTGACGCCTGTG---TCATTTTGCT 491
BSNT_03350 493 -TCTTTGCTTACTTATCTCTCCTATAAAGAAGCGATGTATACGCTGGTAG 541
||||||.||||.|||||.||.||.||.|||||.|||||.|||||.||||
RBAM_020660__ 492 TTCTTTGTTTACGTATCTTTCTTACAAGGAAGCAATGTACACGCTTGTAG 541
BSNT_03350 542 CTGTATTTGTAGCGGCAAGATTAATCGATTTTATTCAGGAAGGCGGATAC 591
|.||.|||||.||.||.|||||.||.||||||||.|||||||||||.||.
RBAM_020660__ 542 CCGTTTTTGTCGCTGCGAGATTGATTGATTTTATACAGGAAGGCGGCTAT 591
BSNT_03350 592 GCTGCTAAAGGCGCTACGATCATCTCCTCGAAAAACGACCTGATTCAGAA 641
||.||.|||||.||.|||||.||.||.|||||||||||..||||.|||.|
RBAM_020660__ 592 GCCGCAAAAGGGGCAACGATTATTTCTTCGAAAAACGATTTGATCCAGCA 641
BSNT_03350 642 AAAGATTCTTGAAGAAATGGAACGTGGCGTCACCATTTTGAAAGGACAAG 691
|||.||..|||||||.|||||.||.||||||||..||||.||||||||.|
RBAM_020660__ 642 AAAAATCATTGAAGAGATGGAGCGCGGCGTCACTGTTTTAAAAGGACAGG 691
BSNT_03350 692 GTTCCTACACAAAAGAGGATATAGATGTACTTTATTGTGTGGTGCCGAAA 741
|.|||||.||||||||.||.|..||.||.|||||.||.||.||.||||||
RBAM_020660__ 692 GATCCTATACAAAAGAAGACAGGGACGTTCTTTACTGCGTCGTTCCGAAA 741
BSNT_03350 742 AACGAATTGGTGATGCTGAAAAGCGTGATTAACTCCATTGATCCCCATGC 791
||||||.|.|||.|..||||||||||.||.|..|||.||||.||.||.||
RBAM_020660__ 742 AACGAAATTGTGCTTTTGAAAAGCGTCATCACTTCCGTTGACCCGCACGC 791
BSNT_03350 792 CTTTGTAGCGGTAAGCGATGTTCACGATGTGCTCGGAGAAGGATTTACGC 841
||||||.||.||||||||.|||||.|||||||||||.|||||||||||||
RBAM_020660__ 792 CTTTGTTGCAGTAAGCGACGTTCATGATGTGCTCGGCGAAGGATTTACGC 841
BSNT_03350 842 TTGATGAAAATAAAAATCCGCTTCCGCGCTGA------ 873
||||||||||||||||||||.| |.||
RBAM_020660__ 842 TTGATGAAAATAAAAATCCGAT------CAGACGATAA 873
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