Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03346 and RBAM_020620

See Amino acid alignment / Visit BSNT_03346 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:32
# Commandline: needle
#    -asequence dna-align/BSNT_03346___ypjG.1.9828.seq
#    -bsequence dna-align/RBAM_020620___ypjG.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03346___ypjG-RBAM_020620___ypjG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03346___ypjG-RBAM_020620___ypjG.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03346___ypjG
# 2: RBAM_020620___ypjG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 738
# Identity:     533/738 (72.2%)
# Similarity:   533/738 (72.2%)
# Gaps:          51/738 ( 6.9%)
# Score: 1881.0
# 
#
#=======================================

BSNT_03346___      1 ATGT---ATAATGCTGACGTTCTTGCTTTTGGCGCCCACAGTGATGATGT     47
                     ||||   |..|.|.|||..||||.||.||.||||||||.|||||||||||
RBAM_020620__      1 ATGTCTGAACACGTTGATATTCTGGCGTTCGGCGCCCATAGTGATGATGT     50

BSNT_03346___     48 CGAGATCGGAATGGGCGGCACAATAGCGAAGTTT----GTCAAACAGGGA     93
                     |||||||||.|||||||||||.||.||.||.|||    .||||    ||.
RBAM_020620__     51 CGAGATCGGTATGGGCGGCACGATCGCAAAATTTACGGCTCAA----GGG     96

BSNT_03346___     94 AAAAAAGTAATGATATGCGACTTGACAGAAGCGGAACTCTCTTCTAACGG    143
                     ||||..|...||||||||||.|||||..|.||.|||||.||.||||||||
RBAM_020620__     97 AAAACCGCGGTGATATGCGATTTGACCCAGGCCGAACTATCATCTAACGG    146

BSNT_03346___    144 TACGGTCAGTTTACGTAAAGAAGAAGCAGCTGAAGCAGCCCGCATATTAG    193
                     .|||||..|..||.|.|||||||||||.||.||.||.||.||.||..|.|
RBAM_020620__    147 AACGGTAGGGATAAGAAAAGAAGAAGCGGCAGAGGCGGCACGAATTCTCG    196

BSNT_03346___    194 GCGCAGATAAA----AGAATTCAGCTGACGCTTCCAGACCGCGGCCTAAT    239
                     |||    ||||    |||||.|||||.||||||||.||||||||.||..|
RBAM_020620__    197 GCG----TAAAAGAGAGAATCCAGCTTACGCTTCCCGACCGCGGGCTTTT    242

BSNT_03346___    240 AATGAGTGATCA-GGCAATTCGGTC-GATTGTCACTGTCATCAGAACCTG    287
                     .|..|||||..| ||||  ||.|.| ||||||||.||||||||||.||||
RBAM_020620__    243 GAAAAGTGAGGACGGCA--TCCGCCGGATTGTCAGTGTCATCAGAGCCTG    290

BSNT_03346___    288 CCGCCCAAAAGCGGTTTTTATGCCGTATAAAAAGGATCGCCATCCGGATC    337
                     |||.||.|||.|.|||||.|||||.|||...||.||.||||||||.||.|
RBAM_020620__    291 CCGGCCGAAAACCGTTTTCATGCCTTATCCGAAAGACCGCCATCCTGACC    340

BSNT_03346___    338 ACGGCAATGCGGCTGCACTGGTGGAAGAAGCGATCTTTTCCGCCGGAATC    387
                     |||||||||||||.||..||||.|||||||||.|.||.||.||.|||||.
RBAM_020620__    341 ACGGCAATGCGGCGGCTTTGGTCGAAGAAGCGGTGTTCTCGGCGGGAATT    390

BSNT_03346___    388 CATAAATATAAAGAT------GAAAAAAGCCTTCCGGCGCATAAAG-TCA    430
                     ||||||||.|.||||      |||      ||.|||||.|||||.| |||
RBAM_020620__    391 CATAAATACAGAGATCACCAGGAA------CTGCCGGCTCATAAGGCTCA    434

BSNT_03346___    431 GCAAG-GTTTACTATTATATGATAAATGGTTTTCATCAGCCGGATTTTGT    479
                     ||  | ||.||||||||||||||.||.||.|||||.|..|||||.|||||
RBAM_020620__    435 GC--GCGTATACTATTATATGATCAACGGGTTTCACCGTCCGGACTTTGT    482

BSNT_03346___    480 CATTGATATCTCGGATACAATAGAGGCAAAGAAACAAAGCCTCAACGCCT    529
                     .||.||.||..||||.||.||.||....||.|||.|||||||..||||||
RBAM_020620__    483 AATCGACATAACGGAAACCATCGATCTGAAAAAAGAAAGCCTGCACGCCT    532

BSNT_03346___    530 ACAAAAGCCAGTTTATCCCGTCAAAGGATTCAGTTTCTACTCCTCTGACG    579
                     |..|||||||||||||.||..|...|.|.|||||....||.||.|||||.
RBAM_020620__    533 ATCAAAGCCAGTTTATTCCTACGGCGCAGTCAGTGAACACACCGCTGACC    582

BSNT_03346___    580 AATGGTTATATCGAGATCGTTGAAGCGAGAGAAAAGCTTTACGGTAAAGA    629
                     ||.|||||||||||.||.||.||||||.|.||||..||.||.||.|||||
RBAM_020620__    583 AACGGTTATATCGAAATGGTGGAAGCGCGGGAAAGACTGTATGGCAAAGA    632

BSNT_03346___    630 AGCGGGCGTGGAGTATGCCGAAGGTTTCTTTTCCAAACGGATGC------    673
                     |||.||...||.|||||||||.|||||||||||.||||.|.|.|      
RBAM_020620__    633 AGCCGGGACGGGGTATGCCGAGGGTTTCTTTTCAAAACAGCTTCCCGTTT    682

BSNT_03346___    674 TGATGCTTGATCATGATGTGCTTGGGGGCGAACAATGA    711
                     |||      ||.|||||||..|||||||||.|||||||
RBAM_020620__    683 TGA------ATGATGATGTTTTTGGGGGCGGACAATGA    714


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