Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03346 and RBAM_020620
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:32
# Commandline: needle
# -asequence dna-align/BSNT_03346___ypjG.1.9828.seq
# -bsequence dna-align/RBAM_020620___ypjG.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03346___ypjG-RBAM_020620___ypjG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03346___ypjG-RBAM_020620___ypjG.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03346___ypjG
# 2: RBAM_020620___ypjG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 738
# Identity: 533/738 (72.2%)
# Similarity: 533/738 (72.2%)
# Gaps: 51/738 ( 6.9%)
# Score: 1881.0
#
#
#=======================================
BSNT_03346___ 1 ATGT---ATAATGCTGACGTTCTTGCTTTTGGCGCCCACAGTGATGATGT 47
|||| |..|.|.|||..||||.||.||.||||||||.|||||||||||
RBAM_020620__ 1 ATGTCTGAACACGTTGATATTCTGGCGTTCGGCGCCCATAGTGATGATGT 50
BSNT_03346___ 48 CGAGATCGGAATGGGCGGCACAATAGCGAAGTTT----GTCAAACAGGGA 93
|||||||||.|||||||||||.||.||.||.||| .|||| ||.
RBAM_020620__ 51 CGAGATCGGTATGGGCGGCACGATCGCAAAATTTACGGCTCAA----GGG 96
BSNT_03346___ 94 AAAAAAGTAATGATATGCGACTTGACAGAAGCGGAACTCTCTTCTAACGG 143
||||..|...||||||||||.|||||..|.||.|||||.||.||||||||
RBAM_020620__ 97 AAAACCGCGGTGATATGCGATTTGACCCAGGCCGAACTATCATCTAACGG 146
BSNT_03346___ 144 TACGGTCAGTTTACGTAAAGAAGAAGCAGCTGAAGCAGCCCGCATATTAG 193
.|||||..|..||.|.|||||||||||.||.||.||.||.||.||..|.|
RBAM_020620__ 147 AACGGTAGGGATAAGAAAAGAAGAAGCGGCAGAGGCGGCACGAATTCTCG 196
BSNT_03346___ 194 GCGCAGATAAA----AGAATTCAGCTGACGCTTCCAGACCGCGGCCTAAT 239
||| |||| |||||.|||||.||||||||.||||||||.||..|
RBAM_020620__ 197 GCG----TAAAAGAGAGAATCCAGCTTACGCTTCCCGACCGCGGGCTTTT 242
BSNT_03346___ 240 AATGAGTGATCA-GGCAATTCGGTC-GATTGTCACTGTCATCAGAACCTG 287
.|..|||||..| |||| ||.|.| ||||||||.||||||||||.||||
RBAM_020620__ 243 GAAAAGTGAGGACGGCA--TCCGCCGGATTGTCAGTGTCATCAGAGCCTG 290
BSNT_03346___ 288 CCGCCCAAAAGCGGTTTTTATGCCGTATAAAAAGGATCGCCATCCGGATC 337
|||.||.|||.|.|||||.|||||.|||...||.||.||||||||.||.|
RBAM_020620__ 291 CCGGCCGAAAACCGTTTTCATGCCTTATCCGAAAGACCGCCATCCTGACC 340
BSNT_03346___ 338 ACGGCAATGCGGCTGCACTGGTGGAAGAAGCGATCTTTTCCGCCGGAATC 387
|||||||||||||.||..||||.|||||||||.|.||.||.||.|||||.
RBAM_020620__ 341 ACGGCAATGCGGCGGCTTTGGTCGAAGAAGCGGTGTTCTCGGCGGGAATT 390
BSNT_03346___ 388 CATAAATATAAAGAT------GAAAAAAGCCTTCCGGCGCATAAAG-TCA 430
||||||||.|.|||| ||| ||.|||||.|||||.| |||
RBAM_020620__ 391 CATAAATACAGAGATCACCAGGAA------CTGCCGGCTCATAAGGCTCA 434
BSNT_03346___ 431 GCAAG-GTTTACTATTATATGATAAATGGTTTTCATCAGCCGGATTTTGT 479
|| | ||.||||||||||||||.||.||.|||||.|..|||||.|||||
RBAM_020620__ 435 GC--GCGTATACTATTATATGATCAACGGGTTTCACCGTCCGGACTTTGT 482
BSNT_03346___ 480 CATTGATATCTCGGATACAATAGAGGCAAAGAAACAAAGCCTCAACGCCT 529
.||.||.||..||||.||.||.||....||.|||.|||||||..||||||
RBAM_020620__ 483 AATCGACATAACGGAAACCATCGATCTGAAAAAAGAAAGCCTGCACGCCT 532
BSNT_03346___ 530 ACAAAAGCCAGTTTATCCCGTCAAAGGATTCAGTTTCTACTCCTCTGACG 579
|..|||||||||||||.||..|...|.|.|||||....||.||.|||||.
RBAM_020620__ 533 ATCAAAGCCAGTTTATTCCTACGGCGCAGTCAGTGAACACACCGCTGACC 582
BSNT_03346___ 580 AATGGTTATATCGAGATCGTTGAAGCGAGAGAAAAGCTTTACGGTAAAGA 629
||.|||||||||||.||.||.||||||.|.||||..||.||.||.|||||
RBAM_020620__ 583 AACGGTTATATCGAAATGGTGGAAGCGCGGGAAAGACTGTATGGCAAAGA 632
BSNT_03346___ 630 AGCGGGCGTGGAGTATGCCGAAGGTTTCTTTTCCAAACGGATGC------ 673
|||.||...||.|||||||||.|||||||||||.||||.|.|.|
RBAM_020620__ 633 AGCCGGGACGGGGTATGCCGAGGGTTTCTTTTCAAAACAGCTTCCCGTTT 682
BSNT_03346___ 674 TGATGCTTGATCATGATGTGCTTGGGGGCGAACAATGA 711
||| ||.|||||||..|||||||||.|||||||
RBAM_020620__ 683 TGA------ATGATGATGTTTTTGGGGGCGGACAATGA 714
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