Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03345 and RBAM_020610
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:32
# Commandline: needle
# -asequence dna-align/BSNT_03345___ypjH.1.9828.seq
# -bsequence dna-align/RBAM_020610___ypjH.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03345___ypjH-RBAM_020610___ypjH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03345___ypjH-RBAM_020610___ypjH.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03345___ypjH
# 2: RBAM_020610___ypjH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1155
# Identity: 875/1155 (75.8%)
# Similarity: 875/1155 (75.8%)
# Gaps: 42/1155 ( 3.6%)
# Score: 3288.0
#
#
#=======================================
BSNT_03345___ 1 ATGAGAAAACTAAAAATAGGAATCACATGCTATCCGAGCGTTGGAGGCTC 50
||||||..|.||||||||||.||.||||||||.|||||.||.||||||||
RBAM_020610__ 1 ATGAGACCATTAAAAATAGGGATTACATGCTACCCGAGTGTCGGAGGCTC 50
BSNT_03345___ 51 AGGTATCATTGCGACAGAACTGGGGAAGCAGCTTGCTGAAAAGGGACATG 100
.|||||.||||||||.|||||.||.||||.||||||.|||||.||.||..
RBAM_020610__ 51 GGGTATTATTGCGACGGAACTCGGCAAGCTGCTTGCGGAAAAAGGGCACC 100
BSNT_03345___ 101 AAATCCATTTCATCACATCAAGCATTCCGTTTAGACTGAATACATATCAT 150
|..|.||||||||||||||||||||.|||||.|||.|.||||||||||||
RBAM_020610__ 101 AGGTTCATTTCATCACATCAAGCATCCCGTTCAGATTAAATACATATCAT 150
BSNT_03345___ 151 CCCAATATTCATTTTCATGAAGTTGAGGTTAATCAATATGCTGTTTTTAA 200
||.|||||||||||||||||.||.||.||.||.|||||.||.||.|||||
RBAM_020610__ 151 CCGAATATTCATTTTCATGAGGTGGAAGTCAACCAATACGCGGTATTTAA 200
BSNT_03345___ 201 GTATCCTCCGTATGATTTGACATTGGCAAGCAAAATCGCAGAGGTGGCGG 250
.|||||.||.|||||..|.||..||||.|||||||||||.|||||.||.|
RBAM_020610__ 201 ATATCCGCCTTATGACCTTACGCTGGCGAGCAAAATCGCCGAGGTTGCCG 250
BSNT_03345___ 251 AACGGGAGAATTTAGACATTATCCATGCTCACTATGCTCTCCCGCATGCC 300
...||||.|||.|.||.||.||.||.||.||.|||||.||.||||||||.
RBAM_020610__ 251 CGAGGGAAAATCTTGATATCATTCACGCGCATTATGCGCTGCCGCATGCG 300
BSNT_03345___ 301 GTTTGCGCCTATCTTGCAAAACAAATGCTGAAACGCAATATCGGCATTGT 350
||.|||||.||||||||.|||||.|||||.||||||.|.||||||||.||
RBAM_020610__ 301 GTATGCGCTTATCTTGCCAAACAGATGCTCAAACGCGACATCGGCATCGT 350
BSNT_03345___ 351 TACAACTTTGCATGGCACGGATATCACGGTGTTAGGTTATGATCCGTCTC 400
.||.||..|.||.||.|||||.|||||.||.|||||.|||||||||||..
RBAM_020610__ 351 GACGACGCTTCACGGTACGGACATCACCGTTTTAGGATATGATCCGTCAT 400
BSNT_03345___ 401 TAAAAGATCTGATCCGTTTTGCTATTGAGTCATCAGACAGGGTGACGGCC 450
||||||||.|.|||||||||||.||.||..|.||.|||||.||||||||.
RBAM_020610__ 401 TAAAAGATTTAATCCGTTTTGCCATCGAAGCGTCCGACAGAGTGACGGCG 450
BSNT_03345___ 451 GTCTCCTCAGCGCTTGCGGCTGAAACGTACGATTTAATTAAACCGGAGAA 500
||.||..|.||||||||.|..|||||.||.||.|||||.||.|||||.||
RBAM_020610__ 451 GTATCAACCGCGCTTGCCGGAGAAACATATGACTTAATCAAGCCGGATAA 500
BSNT_03345___ 501 AAAAATTGAAACGATTTATAACTTTATAGACGAGCGCGTGTATCTGAAGA 550
|||||||||.||.||.||.||||||||.||.||.||.||.|||||.||||
RBAM_020610__ 501 AAAAATTGAGACCATCTACAACTTTATTGATGAACGTGTTTATCTTAAGA 550
BSNT_03345___ 551 AAAACACAGCG-GTGATTAAAGAGAAACATGGAATTTTACCAGATGAAAA 599
||||.||||.| || ||.||||||||||||||.|||||.||.||||||||
RBAM_020610__ 551 AAAATACAGAGAGT-ATAAAAGAGAAACATGGCATTTTGCCGGATGAAAA 599
BSNT_03345___ 600 AGTCGTCATCCATGTGTCCAACTTTAGAAAGGTTAAACGCGTGCAGGACG 649
|||||||||||||||.||.|||||.||||||||.|||||.||..|.||.|
RBAM_020610__ 600 AGTCGTCATCCATGTCTCGAACTTCAGAAAGGTAAAACGTGTTAAAGATG 649
BSNT_03345___ 650 TCATCCGTGTGTTCCGCAATATCGCTGGCAAAACGAAAGCGAAGCTGCTT 699
|||||||.||.|||||.||||||||.|.|||.||.||.||||||||.||.
RBAM_020610__ 650 TCATCCGCGTTTTCCGTAATATCGCAGCCAACACAAAGGCGAAGCTCCTG 699
BSNT_03345___ 700 TTAGTCGGAGACGGTCCGGAGAAAT-CGACAGCCTGCGAGCTTATCAGAA 748
.|.|||||.|||||.|||||.||.| ||.| ||.||..|||||.||..||
RBAM_020610__ 700 CTTGTCGGCGACGGGCCGGAAAAGTGCGTC-GCTTGGCAGCTTGTCGAAA 748
BSNT_03345___ 749 AATATGGCTTGGAAGACCAAGTCTTAATGCTTGGAAATCAAGACCGTGTT 798
||||.||..||.|.||.|||||..|..|.||.|||||.||.|||.|.||.
RBAM_020610__ 749 AATACGGTCTGCAGGATCAAGTGCTGCTCCTCGGAAACCAGGACAGGGTG 798
BSNT_03345___ 799 GAAGAGCTTTATTCTATTAGCGATTTGAAGCTGCTGCTATCTGAAAAAGA 848
||||||||.|||||.||.||.||..|.|||||.||.||.|||||||||||
RBAM_020610__ 799 GAAGAGCTGTATTCCATCAGTGACCTTAAGCTCCTTCTTTCTGAAAAAGA 848
BSNT_03345___ 849 AAGCTTTGGCCTTGTCCTGCTTGAAGCGATGGCTTGCGGAGTGCCTTGTA 898
|||.||.||.||.||.||.||.||.||||||||.|||||.|||||.||.|
RBAM_020610__ 849 AAGTTTCGGACTCGTACTTCTGGAGGCGATGGCCTGCGGCGTGCCGTGCA 898
BSNT_03345___ 899 TTGGAACAAACATTGGCGGTATCCCTGAGGTTA-TAAAAAACAATGTGAG 947
|.||||||||.||.|||||.||.||.||.||.| ||||.|.||| ||.||
RBAM_020610__ 899 TCGGAACAAATATCGGCGGAATACCGGAAGTGATTAAAGATCAA-GTAAG 947
BSNT_03345___ 948 CGGATTTTTGGTGGATGTCGGTGATGTTACGGCCGC------AACAGCCC 991
|||.|||.|||||||.|||||.|||.||..|||.|| ||.|||.|
RBAM_020610__ 948 CGGTTTTCTGGTGGAAGTCGGCGATATTCAGGCGGCATCTGAAAAAGCGC 997
BSNT_03345___ 992 GCGCGATGAGCATTTTAGAAGATGAACAGCTAAGCAATCGTTTTACAAAG 1041
..|| |.|||||||||||..||||||.|||||.||.||.||
RBAM_020610__ 998 TTGC------CGTTTTAGAAGATACACAGCTCAGCAAACGATTGAC---- 1037
BSNT_03345___ 1042 GCGGCAATAGA-GATGC-TTGAAAAT----------GAATTTTCTTCTAA 1079
.|| .|||| .||||||| |..||||||||..|
RBAM_020610__ 1038 --------TGATCATGCGCTGAAAATGGTGGAGACCGCCTTTTCTTCGCA 1079
BSNT_03345___ 1080 AAAAATTGTCAGCCAGTATGAACAGATTTATGCCGATTTAGCAGAACCGG 1129
||.|||.|||||.||||||||||.||||||||.|||.||.||||.|||||
RBAM_020610__ 1080 AAGAATCGTCAGTCAGTATGAACGGATTTATGACGAATTGGCAGGACCGG 1129
BSNT_03345___ 1130 AGTGA 1134
|||||
RBAM_020610__ 1130 AGTGA 1134
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