Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03344 and RBAM_020600
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:32
# Commandline: needle
# -asequence dna-align/BSNT_03344___cca.1.9828.seq
# -bsequence dna-align/RBAM_020600___cca.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03344___cca-RBAM_020600___cca.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03344___cca-RBAM_020600___cca.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03344___cca
# 2: RBAM_020600___cca
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1272
# Identity: 844/1272 (66.4%)
# Similarity: 844/1272 (66.4%)
# Gaps: 159/1272 (12.5%)
# Score: 2542.0
#
#
#=======================================
BSNT_03344___ 1 ATGGAAAAAGTTTTTATCAAAGCACTTCCCGTGCTCCGCAT-CTTAATC- 48
||||||.|.|..|||.||||||| .||||.||| |||.|||
RBAM_020600__ 1 ATGGAACAGGAATTTGTCAAAGC---------CCTCCCCATCCTTCATCA 41
BSNT_03344___ 49 ------GAA-GCAGGCCATCAGGCTTATTTTGTCGGAGGCGCAGTTCGTG 91
||| ||.|||||||||||.||.||||||||.||.||.||..|.|
RBAM_020600__ 42 CCTGATGAAGGCGGGCCATCAGGCGTACTTTGTCGGGGGAGCCGTCAGAG 91
BSNT_03344___ 92 ACAGCTATATGAAACGAACGATCGGAGATGTCGATATCGCGA-CAGATGC 140
||||||||||||||||||..||.||.|||||.||.|||||.| ||| .||
RBAM_020600__ 92 ACAGCTATATGAAACGAAAAATAGGTGATGTGGACATCGCAACCAG-CGC 140
BSNT_03344___ 141 GGCACCTGATCAAGTAGAACGGCTGTTTCAGCGGACTGTTGATGTAGGCA 190
..|.||..||.|.||.||.||.||.|||.||||||||||.||||||||.|
RBAM_020600__ 141 TTCGCCGAATGAGGTGGAGCGTCTCTTTAAGCGGACTGTCGATGTAGGAA 190
BSNT_03344___ 191 AAGAGCACGGGACCATTATTGTGCTCTGGGAGGATGAAACCTATGAAGTC 240
||||||||||.|||.|.||.||.||.|||||.||||||||||||||||||
RBAM_020600__ 191 AAGAGCACGGCACCGTCATCGTCCTGTGGGAAGATGAAACCTATGAAGTC 240
BSNT_03344___ 241 ACGACATTCCGGACTGAATCTGATTATGTTGATTTCAGAAG----ACCGT 286
||.||.||.||..|.|||||.||.||| ||| ||||.
RBAM_020600__ 241 ACCACTTTTCGTGCCGAATCAGAATAT-----------AAGGACTACCGG 279
BSNT_03344___ 287 C-------AGAAGTGCAATTTATCTCATCATTAGAAGAGGATCTAAAACG 329
| ||..||||..||.||..|.||.|||..|||.||..||||.||
RBAM_020600__ 280 CGCCCTGAAGCTGTGCGGTTCATTACTTCTTTATCAGAAGACTTAAAGCG 329
BSNT_03344___ 330 CAGAGATTTAACGATCAATGCGATGGCCATGACAGCGGACGGGAAGGTGC 379
.|||||.||||||||.|||||||||||.|||.|.||.||.||..||.|||
RBAM_020600__ 330 GAGAGACTTAACGATTAATGCGATGGCGATGTCTGCCGAAGGAGAGCTGC 379
BSNT_03344___ 380 TTGATTATTTTGGCGGCAAGAAAGATATTGATCAGAAAG-TGATTCGAAC 428
||||||||||.||.|||..|.|.|||||.|..|| |||| ||||.||.||
RBAM_020600__ 380 TTGATTATTTCGGAGGCGCGCATGATATCGGACA-AAAGCTGATCCGTAC 428
BSNT_03344___ 429 CGTTGGAAAGCCTGAGGATAGATTTCAAGAGGATGCGCTTCGTATGCTGA 478
.||.||.||.|||||.||..|.||||..||.||.||.||.||.|||.|||
RBAM_020600__ 429 GGTGGGTAACCCTGAAGACCGTTTTCGGGAAGACGCTCTGCGGATGATGA 478
BSNT_03344___ 479 GAGCCGTACGCTTTATGAGCCAGCTTGGCTTTACGCTTTCACCGGAAACA 528
|||||||.|||||||||||.|||||.|||||| ||.|.| ||||.|
RBAM_020600__ 479 GAGCCGTCCGCTTTATGAGTCAGCTCGGCTTT---CTGTTA---GAAAAA 522
BSNT_03344___ 529 GA------AGAAGCCATTGCGAAAGAAAAATCA-----CTCCTCTCCCAT 567
|| |||.|| ||..|.||||..|| ||..|..|.|||
RBAM_020600__ 523 GAAACAAGAGAGGC-----CGTCATAAAAGACAGGGAGCTTTTGGCACAT 567
BSNT_03344___ 568 GTTTCAGTCGAACGAAAAACTATAGAGTTCGAGAAATTGCTGCAGGGAAG 617
||.|||||.||||||||.||..|.|||||.||.||..||||||||| |
RBAM_020600__ 568 GTATCAGTAGAACGAAAGACCGTCGAGTTTGAAAAGCTGCTGCAGG---G 614
BSNT_03344___ 618 AGCTT-CTCGCCAG--GCGCTTCAAACACTCATTCAAACGAGATTGTAT- 663
.|||| |||.|.|| |||.|||||||..|..|.||||| ||.||..||
RBAM_020600__ 615 CGCTTCCTCACAAGAAGCGATTCAAACGATGGTGCAAAC-AGGTTTGATA 663
BSNT_03344___ 664 GAAGAGCTTCCTGG--TTT----TTATCATAAACGAG----AAAACCT-G 702
.|||||||.||.|| ||| |||| ||| |||..|| |
RBAM_020600__ 664 CAAGAGCTGCCCGGCCTTTCCGGTTAT-------GAGCAGCAAATGCTGG 706
BSNT_03344___ 703 ATTTCAACGAGTGAGTTTCCATTCTTC-TCTTTAACAT-CCCGTGAGGAG 750
| |.||||.|..|||||.|| ||| ||||| |.|| |.||.||.||.
RBAM_020600__ 707 A----AGCGAGCGGCTTTCCGTT-TTCTTCTTT-AGATGCACGCGAAGAA 750
BSNT_03344___ 751 CTTTGGGCTGCTCTTTTAATTAACCTTGGCATAGTCTT-----GAAAGAC 795
|..|||||.||.||.|||.|....||.| ||||| ||| |.
RBAM_020600__ 751 CGCTGGGCAGCGCTGTTATTGTTTCTCG-----GTCTTTGTCCGAA--AA 793
BSNT_03344___ 796 GCGCCG----CTTTTCCTGAAAGGTTGGAAGCTCCCGGGAAAAGTGATCA 841
|||||| .|||| |.|||...|||||.||.|||||||||||.||.|
RBAM_020600__ 794 GCGCCGAGGCGTTTT--TAAAACAATGGAAACTGCCGGGAAAAGTCATAA 841
BSNT_03344___ 842 AGGAAGCCATTCACATTGCCGATA--CGTTT----GGC-CAGAGTCTTGA 884
|..||||.||.||.|| .||| ||||| ||| ||| ||.||
RBAM_020600__ 842 AAAAAGCGATGCAGAT----CATAAGCGTTTATCCGGCGCAG---CTGGA 884
BSNT_03344___ 885 --CGTAATGACAATGTACAGAGCTGGGGAAAAAGCACTGCTCTCAGCGGC 932
||.|| .|.||||||.|.|| ||.|.|.||.|||.|.|||||.|.
RBAM_020600__ 885 AGCGGAA--GCGATGTACCGGGC---GGGAGAGGCGCTGTTTTCAGCCGT 929
BSNT_03344___ 933 CAAAAT----ATCGCAGCTTCGGCAAAA-CGAAAAAC--TGGATGAAAAG 975
.||||| || ||| |.|||| |..||.|| |.||||||.|.
RBAM_020600__ 930 TAAAATCGGGAT----GCT---GAAAAAGCATAAGACGATTGATGAACAA 972
BSNT_03344___ 976 AAACTGAAGGACATTCAGTACGCT-TATCAAAACCTGCCGATCAAAAGCC 1024
||.|||||.||..||||| |..|| |||.|..|.||||||||||||||||
RBAM_020600__ 973 AAGCTGAAAGAGGTTCAG-AGCCTGTATGAGCAGCTGCCGATCAAAAGCC 1021
BSNT_03344___ 1025 TTAAGGATCTTGATATCACGGGTAAGGACTTGCTTGCGCTTCGAAACCGG 1074
||...||.||.||.||..|.||....||..||.|.|.|||..|||||| |
RBAM_020600__ 1022 TTCGAGACCTCGACATTTCAGGCGCTGATCTGATGGAGCTCAGAAACC-G 1070
BSNT_03344___ 1075 CCG-GCCGGAAAATGGGTGTCGGAAGAATTACAGCGGATCGAGCAGGCTG 1123
||| ||.||.|||||||||.|.||||||.|.|..||||||||..|.||.|
RBAM_020600__ 1071 CCGCGCGGGTAAATGGGTGGCCGAAGAACTTCGCCGGATCGAAGAAGCGG 1120
BSNT_03344___ 1124 TTGTGACAGGGAAGCTCTCCAATCAAAAGAAACACATAGAGGAGTGGCT- 1172
|..||.|||||||||||.|.||.|.|||..|..|||||.||||||||||
RBAM_020600__ 1121 TATTGGCAGGGAAGCTCCCTAACCGAAAACATGACATAAAGGAGTGGCTC 1170
BSNT_03344___ 1173 GAAGACATGCGGTCAACATTAA 1194
|.| .||||.|.||||||||||
RBAM_020600__ 1171 GCA-TCATGGGATCAACATTAA 1191
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