Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03341 and RBAM_020580

See Amino acid alignment / Visit BSNT_03341 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:31
# Commandline: needle
#    -asequence dna-align/BSNT_03341___panB.1.9828.seq
#    -bsequence dna-align/RBAM_020580___panB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03341___panB-RBAM_020580___panB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03341___panB-RBAM_020580___panB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03341___panB
# 2: RBAM_020580___panB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 848
# Identity:     654/848 (77.1%)
# Similarity:   654/848 (77.1%)
# Gaps:          28/848 ( 3.3%)
# Score: 2506.5
# 
#
#=======================================

BSNT_03341___      1 ATGAAAACAAAACTGGATTTTCTAAAAATGAAGGAGTCTGAAGAACCGAT     50
                     ||||||||||||||||||||..|.|||||||||||....|.|||.|||||
RBAM_020580__      1 ATGAAAACAAAACTGGATTTCGTGAAAATGAAGGAAAACGGAGAGCCGAT     50

BSNT_03341___     51 TGTCATGCTGACCGCTTATGATTATCCGGCA-GCTAAACTTGCTGAACAA     99
                     .||.||||||||||||||.|||||||| ||| ||.||.|||||.||.||.
RBAM_020580__     51 CGTAATGCTGACCGCTTACGATTATCC-GCAGGCAAAGCTTGCGGAGCAG     99

BSNT_03341___    100 GCGGGAGTTGACATGATTTTAGTCGGTGATTCACTCGGAATGGTCGTCCT    149
                     ||||||||.|||||||||||||||||.|||||.||||||||||||||.||
RBAM_020580__    100 GCGGGAGTCGACATGATTTTAGTCGGGGATTCGCTCGGAATGGTCGTGCT    149

BSNT_03341___    150 CGGCCTTGATTCAACTGTGGGTGT----GACAGTTGCGGATATGATTCAT    195
                     |||.||.||||||||.||.||.||    |.||||    ||.||||||||.
RBAM_020580__    150 CGGACTCGATTCAACAGTCGGCGTAACGGTCAGT----GACATGATTCAC    195

BSNT_03341___    196 CATACAAAAGCCGTTAAAAGGGGTGCGCCGAATACCTTTATTGTGACAGA    245
                     |||||||||||.||.|||.|.||||||...|||||.|||||.||.||.||
RBAM_020580__    196 CATACAAAAGCGGTAAAACGCGGTGCGAAAAATACGTTTATCGTAACTGA    245

BSNT_03341___    246 TATGCCGTTTATGTCTTATCACCTGTCCAAGGAAGATACGCTGAAAAATG    295
                     .|||||||||||||||||.|||||.||.||.||.|||||..|||||||.|
RBAM_020580__    246 CATGCCGTTTATGTCTTACCACCTTTCAAAAGAGGATACATTGAAAAACG    295

BSNT_03341___    296 CAGCGGCTATCGTTCAGGAAAGCGGAGCTGACGCACTGAAGCTTGAGGGC    345
                     |.|||||.||..|||||||||||||.||.|||||..|.|||||.||.|||
RBAM_020580__    296 CCGCGGCCATTATTCAGGAAAGCGGCGCGGACGCGTTAAAGCTGGAAGGC    345

BSNT_03341___    346 GGAGAAGGCGTGTTTGAATCCATTCGCGCATTGACGCTTGGAGGCATTCC    395
                     |||||.|||||.||.||||||||.|||||..||||.||.||.||.|||||
RBAM_020580__    346 GGAGACGGCGTTTTCGAATCCATCCGCGCGCTGACTCTCGGCGGAATTCC    395

BSNT_03341___    396 AGTAGTCAGTCACTTAGGTTTGACACCGCAGTCAGTCGGCGTACTGGGCG    445
                     .||.|||||.||.|||||..|.|||||||||||.|||||||||.|.||||
RBAM_020580__    396 CGTCGTCAGCCATTTAGGCCTCACACCGCAGTCTGTCGGCGTATTAGGCG    445

BSNT_03341___    446 GCTATAAAGTACAGGGCAAAGACGAACAAAGCGCCAAAAAATTAATAGAA    495
                     |.||||||||||||||.|||||.||.||||||||.|||||..|.||.|||
RBAM_020580__    446 GATATAAAGTACAGGGAAAAGATGAGCAAAGCGCGAAAAAGCTCATTGAA    495

BSNT_03341___    496 GACAGTATAAAATGCGAAGAAGCAGGAGCTATGATGCTTGTGCTGGAATG    545
                     |||||.||.||||||||..|.||.|||||.||||||||.|||||.|||||
RBAM_020580__    496 GACAGCATCAAATGCGAGCAGGCGGGAGCGATGATGCTCGTGCTTGAATG    545

BSNT_03341___    546 TGTACCGGCAGAACTCACAGCCAAAATTGCCGATACGCTAAG-------C    588
                     .||.||.||.|||||.||.||.|||||     |.|.|  |||       .
RBAM_020580__    546 CGTGCCTGCTGAACTGACTGCTAAAAT-----AAAAG--AAGAAGTATCT    588

BSNT_03341___    589 ATACCGGTCATTGGAATCGGGGCGGGTGTGAAAGCAGACGGACAAGTTCT    638
                     ||.||.|||||.||||||||.||.|||...|||||.|||||.|||||.||
RBAM_020580__    589 ATTCCCGTCATCGGAATCGGAGCCGGTTCAAAAGCGGACGGCCAAGTCCT    638

BSNT_03341___    639 CGTTTATCATGATATTATCGGCCACGGTGTTGAGAGAACACCTAAATTTG    688
                     .||.||||||||..|..||||||||||.||.||.|||||.||.||.||.|
RBAM_020580__    639 TGTCTATCATGACGTCGTCGGCCACGGCGTGGACAGAACCCCGAAGTTCG    688

BSNT_03341___    689 TAAAGCAATATACGC--GTATTGATGAAACCATCGAAACAGCAATCAGCG    736
                     |.|||||  ||||||  ..||.||.|..||.||.||..|.||..||||||
RBAM_020580__    689 TGAAGCA--ATACGCCAAAATCGACGGCACGATTGAGTCGGCCCTCAGCG    736

BSNT_03341___    737 GATATGTTCAGGATGTAAGACATCGTGCTTTCCCTGAACAAAAGCATTCC    786
                     |.|||||.|..|||||.|.|.|.||.|.||||||.|||.|||||||||||
RBAM_020580__    737 GTTATGTCCGTGATGTGAAAGAACGGGTTTTCCCGGAAGAAAAGCATTCC    786

BSNT_03341___    787 TTTCAAATGAACCAGACAGTGCTGGACGGCTTGTACGGGGGAAAATAA    834
                     |||||.||.|||||.||.||||||.|.|||||||||||.|||||.|||
RBAM_020580__    787 TTTCAGATAAACCAAACTGTGCTGCAAGGCTTGTACGGAGGAAAGTAA    834


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_03341 and RBAM_020580

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
