Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03339 and RBAM_020570
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:31
# Commandline: needle
# -asequence dna-align/BSNT_03339___panC.1.9828.seq
# -bsequence dna-align/RBAM_020570___panC.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03339___panC-RBAM_020570___panC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03339___panC-RBAM_020570___panC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03339___panC
# 2: RBAM_020570___panC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 887
# Identity: 623/887 (70.2%)
# Similarity: 623/887 (70.2%)
# Gaps: 52/887 ( 5.9%)
# Score: 2032.0
#
#
#=======================================
BSNT_03339___ 1 ATGAGACAGATTACTGATATTACACAGCTGAAAGAAGCCATAAAACAATA 50
||||.|||..|.||.||.|.|..|||||||||||||...||...||||||
RBAM_020570__ 1 ATGAAACAACTGACAGAAACTCAACAGCTGAAAGAATTGATTGCACAATA 50
BSNT_03339___ 51 TCATTCAGAGGGCAAGTCAATCGGATTTGTTCCGACGATGGGGTTTCTGC 100
.|..|||||.|||..|.|.||||||||.||.|||||.|||||.|||||.|
RBAM_020570__ 51 CCGCTCAGAAGGCCGGACGATCGGATTCGTCCCGACAATGGGTTTTCTTC 100
BSNT_03339___ 101 ATGAGGGGCATTTAACCTTAGCAGACAAAGCAAGACAAGAAAACGACGCC 150
||||.||.|||.|.||..|.|..||.||||||||..||||||||||
RBAM_020570__ 101 ATGAAGGACATCTGACGCTGGTTGAAAAAGCAAGCAAAGAAAACGA---- 146
BSNT_03339___ 151 GTTATT------ATGAGTATTTTTGTGAATCCTGCACAATTCGGCCCTAA 194
|||| |||||.||.|||||.|||||..|.||||||||.||...
RBAM_020570__ 147 --TATTGTCGTGATGAGCATCTTTGTCAATCCGACTCAATTCGGACCGGG 194
BSNT_03339___ 195 TGAAGATTTTGAAGCATATCCGCGCGATATTGAGCGGGATGCAGCTCTTG 244
.||.||||..||||||||||||||.|||.|..||||.|||||....||||
RBAM_020570__ 195 CGAGGATTACGAAGCATATCCGCGAGATTTAAAGCGCGATGCCCGGCTTG 244
BSNT_03339___ 245 CAGAAAACGCCGGAGTCGATATTTTATTTACGCC-------AGATGCTCA 287
|||||.|.||.||.|..|||.||||.|||||||| ||
RBAM_020570__ 245 CAGAACAGGCGGGGGCAGATGTTTTGTTTACGCCGTCTCCAAG------- 287
BSNT_03339___ 288 TGATATGTATCCCGGTGAAAAGAATGTCACGATTCATGTAGAAAGACGCA 337
|||||||||....||.||..|.|||||..|..|.||.||..||||..|.|
RBAM_020570__ 288 TGATATGTACAAAGGCGAGCAAAATGTTGCCGTGCAAGTGAAAAGGAGAA 337
BSNT_03339___ 338 CAGACGTGTTATGCGGGCG-CTCAAGAGAAGGACATTTTGACGGGGTCGC 386
|.||||||||.||| |||| |||..|.|..||.|||||||||||.||.||
RBAM_020570__ 338 CTGACGTGTTGTGC-GGCGCCTCCCGCGTCGGCCATTTTGACGGAGTGGC 386
BSNT_03339___ 387 GATCGTACTGACGAAGCTTTTCAACCTAGTCAAGCCGACTCGTGCCTATT 436
.|..||.|||||||||.|||||||.||.||.||.|||||.||.|||||.|
RBAM_020570__ 387 CACTGTGCTGACGAAGTTTTTCAATCTCGTTAAACCGACCCGCGCCTACT 436
BSNT_03339___ 437 TCGGTTTAAAGGATGCGCAGCAGGTAGCTGTTGTTGATGGGTT-AATCAG 485
||||..|.||.|||||.|||||||.|||.|||||.||.||.|| |.|.||
RBAM_020570__ 437 TCGGCCTGAAAGATGCCCAGCAGGCAGCGGTTGTGGACGGATTGATTGAG 486
BSNT_03339___ 486 TGACTTCTTCATGGATATTGAATTGGTTCCTGTCGATACGGTCAGAGAGG 535
||.|||||.||||||||.|||||||||.|.||.||.|||||||||||.|
RBAM_020570__ 487 -GATTTCTTTATGGATATCGAATTGGTTGCAGTGGACACGGTCAGAGAAG 535
BSNT_03339___ 536 AAGACGG-CTTAGCTAAAAGCTCTCGCAATGTATACTTAAC--AGCTGAG 582
||||||| ||| ||.||||||||||||||.||.||..|.|| ||| ||
RBAM_020570__ 536 AAGACGGACTT-GCCAAAAGCTCTCGCAACGTCTATCTGACTGAGC--AG 582
BSNT_03339___ 583 GAAAGAAAAGAAGCGCCTAAGCTGTATCGGGCCCTTCAAACAA-GTGCGG 631
|||.|.|||||||||||.|.|.|.|||...| |.||..|.||| ||||.|
RBAM_020570__ 583 GAACGCAAAGAAGCGCCGATGATCTATAAAG-CATTGCAGCAAGGTGCCG 631
BSNT_03339___ 632 AGCTGATCCAAGCCGGTGAAAGAGATCCTGAAGCGGTGATAAAAGCTGCA 681
|.|||||...||.||||||||||.||||.|||.|.||.||||||.|.|..
RBAM_020570__ 632 AACTGATTAGAGACGGTGAAAGAAATCCGGAAACCGTTATAAAAACCGTC 681
BSNT_03339___ 682 AAAGAAATCATTGAAACGACTAGCGGAACCATAGACTATGTAGAGCTTTA 731
|..||.|||||.||||..||.|||||...|||.||.||||..||.||.||
RBAM_020570__ 682 ACCGATATCATCGAAAACACAAGCGGCGTCATTGATTATGCCGAACTGTA 731
BSNT_03339___ 732 TTCCTATCCGGA----ACTCGAGCCTGTGA-ATGAAATTGCTGGAAAGAT 776
..|.|||||||| |||| .||.|...| ||.||| .||.|||.|
RBAM_020570__ 732 CGCTTATCCGGAGCTGACTC-CGCTTAAAACATTAAA----CGGCAAGGT 776
BSNT_03339___ 777 GATTCTCG-CTGTTGCAGTTGCTTTTTCAAAAGCGCGTTTAATAGATAAT 825
.|||||.| ||| |||.||....|||||.|||||..|..|.||.||||||
RBAM_020570__ 777 CATTCTGGCCTG-TGCCGTCCAATTTTCTAAAGCCAGACTGATTGATAAT 825
BSNT_03339___ 826 ATCATTATTGATATTCGA-GAAATGGAGAGAATATAA 861
||||||||||||||| || |||..|||||||..||||
RBAM_020570__ 826 ATCATTATTGATATT-GATGAATGGGAGAGATCATAA 861
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