Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03337 and RBAM_020550
See
Amino acid alignment /
Visit
BSNT_03337 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:31
# Commandline: needle
# -asequence dna-align/BSNT_03337___dinG.1.9828.seq
# -bsequence dna-align/RBAM_020550___dinG.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03337___dinG-RBAM_020550___dinG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03337___dinG-RBAM_020550___dinG.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03337___dinG
# 2: RBAM_020550___dinG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2951
# Identity: 2023/2951 (68.6%)
# Similarity: 2023/2951 (68.6%)
# Gaps: 319/2951 (10.8%)
# Score: 6740.5
#
#
#=======================================
BSNT_03337___ 1 ATGAATAAGCAACGGTTCGTTGTTATAGATGTAGAGACAACAGGGAATTC 50
|||||.||.||||||||||||||.||||||||.||.||||||||.|||||
RBAM_020550__ 1 ATGAACAAACAACGGTTCGTTGTCATAGATGTCGAAACAACAGGAAATTC 50
BSNT_03337___ 51 GCCGAAGAAAGGCGATAAAATCATACAAATCGCAGCGGTTGTAATCGAAA 100
||||||.||.||||||||||||||.|||||||||||||||||.||.||||
RBAM_020550__ 51 GCCGAAAAAGGGCGATAAAATCATTCAAATCGCAGCGGTTGTCATTGAAA 100
BSNT_03337___ 101 ATGGACAAATTACTGAGCGGTTTTCAAAATACATTAATCCAAATAAATCA 150
||||||||||.||||||||||||||||||||.||.|||||.|||.|..|.
RBAM_020550__ 101 ATGGACAAATAACTGAGCGGTTTTCAAAATATATCAATCCGAATCAGGCC 150
BSNT_03337___ 151 ATCCCTGCTTTTATTGAGCAGCTTACTGGAATCTCTAATC--AAATGGTC 198
|||||..|.||||||||.|||||.||.|||||.|| .|| .||||||.
RBAM_020550__ 151 ATCCCGCCGTTTATTGAACAGCTGACCGGAATATC--GTCCGGAATGGTT 198
BSNT_03337___ 199 GAGAATGAACAGCCATTTGAAGCAGTTGCTGAAGAAGTATTCCAATTGCT 248
||.|||||||.|||.||||||||.||.||.||.||..|.||.||..||||
RBAM_020550__ 199 GAAAATGAACTGCCGTTTGAAGCGGTCGCGGAGGAGATTTTTCATCTGCT 248
BSNT_03337___ 249 TGACGGCGCTTATTTTGTCGCACACAATATCCATTTTGACCTTGGATTTG 298
|||||||||.||||||||.||.||||||||.|||||.|||||.|||||||
RBAM_020550__ 249 TGACGGCGCGTATTTTGTTGCCCACAATATTCATTTCGACCTCGGATTTG 298
BSNT_03337___ 299 TCAAGTATGAGCTACATAAG----GCGGGCTTTCAGCTCCCAGATTGTGA 344
||..|.||||.| |.|| |||||||.|.||||.||.||||||||
RBAM_020550__ 299 TCCGGCATGAAC----TGAGCGAAGCGGGCTATGAGCTGCCGGATTGTGA 344
BSNT_03337___ 345 AGTGCTTGATACTGTCGAGCTCTCACGTATTGTTTTTCCGGGATTTGAAG 394
||||||||||||.||.|||||.||.|||||||||||.|||||.|||||||
RBAM_020550__ 345 AGTGCTTGATACGGTTGAGCTTTCGCGTATTGTTTTCCCGGGGTTTGAAG 394
BSNT_03337___ 395 GGTATAAGCTGACG--GAATTAAGCGAGGAGCTTCA----GCTGCGGCAT 438
|.|||||||| || ||.||..|.|.||||||..| |.| |||
RBAM_020550__ 395 GATATAAGCT--CGGTGAGTTGTGTGCGGAGCTGAATATTGTT----CAT 438
BSNT_03337___ 439 GATCAGCCGCACCGGGCTGACAGCGATGCTGAAGTGACAGGGCTTATTTT 488
||.|..||.|||||.||.|||||||||||.||.||.||.||.||..|.||
RBAM_020550__ 439 GACCGCCCTCACCGCGCAGACAGCGATGCGGAGGTTACGGGACTGGTCTT 488
BSNT_03337___ 489 TTTGGAAATCCTTGAAAAGCTGCGGCAGCTTCCTTATCCGACATTAAAGC 538
|||.||.||..|..|.||.|||...||..|.||||..|||||||||||||
RBAM_020550__ 489 TTTAGACATTTTACATAAACTGAAACATTTGCCTTTACCGACATTAAAGC 538
BSNT_03337___ 539 AGTTAAGAAGGCTTTCGCAGCATTTCATCAGTGATCTGACGCATTTGTTG 588
||.|.|||||||||||.||||||||.|||||.|||.||||||...|.|||
RBAM_020550__ 539 AGCTTAGAAGGCTTTCACAGCATTTTATCAGCGATTTGACGCTGCTTTTG 588
BSNT_03337___ 589 GATATGTTCATTAATGAAAACAGACATACCGAGATACCGG---------- 628
|||...||.||..||||||.||| .||||
RBAM_020550__ 589 GATTCTTTTATACATGAAAGCAG------------GCCGGCGGAAGAAAA 626
BSNT_03337___ 629 --GCT-------ATACGCGCTTTTCTTCGTTTTCTGTCAGAGAACCTGAA 669
||| ||||| |.||.|||||..|.|.|||.||
RBAM_020550__ 627 AAGCTGCATTCCATACG-------CCTCTTTTTCAATTAAAGAGCC---- 665
BSNT_03337___ 670 GCTATCGAT---------GTT---CGT---ATAAATGAGGACGAGAACTT 704
|||| ||| ||| .|.||||.||
RBAM_020550__ 666 -----CGATCACATTCCGGTTTCCCGTCCGGTGAATGCGG---------- 700
BSNT_03337___ 705 CTCATTTGAGATCGAAAGCTGGGAAGCGGGAAATGAAAAAGCGCTGTCAG 754
|..||||..|.||||..|||.|.|..|.|||.||| |||
RBAM_020550__ 701 --CCATTGACCTTGAAAAGTGGAACGAAGAAAAAGAA----------CAG 738
BSNT_03337___ 755 A-GTTA---------ATGCCTGGGTATGAAAAAAGAGACGGCCAAAT--- 791
| .||| ||.||..|.||||||||..|..|.||.||..|
RBAM_020550__ 739 ATCTTATCCGGCATCATCCCCCGCTATGAAAAGCGGAAAGGGCAGCTTTC 788
BSNT_03337___ 792 GATGAT-GATGAGAGAG-GTGGCTGATGCGTTTGCCAATCGTGAGCATGC 839
|||||| ||||| ||.| .|||| ||.||...||||||.||||||||
RBAM_020550__ 789 GATGATGGATGA-AGTGCTTGGC----GCCTTCCGCAATCGGGAGCATGC 833
BSNT_03337___ 840 GCTGATTGAAGCTCCTCCAGGCATCGGAAAAACGATTGGCTATCTTATTC 889
||||||||||||..|.||.|||||||||||||||||.||.|||||..|||
RBAM_020550__ 834 GCTGATTGAAGCGGCACCCGGCATCGGAAAAACGATCGGTTATCTCGTTC 883
BSNT_03337___ 890 CGGCTGCGCTTTTTGCCAAGAAATCAAAAAAG---CCGGTCATAATCAGC 936
||||||...|.|||||| |||.|..|..|| ||.|||||.||||||
RBAM_020550__ 884 CGGCTGTTTTATTTGCC---AAAGCGGAGCAGACTCCCGTCATTATCAGC 930
BSNT_03337___ 937 ACGTATTCGACGCTTTTACAGCAGCAGAT----TCTCACAAAGGATTTGC 982
|||||.||.||.|||||.||||||||||| ||| ||.|||.|.|
RBAM_020550__ 931 ACGTACTCTACTCTTTTGCAGCAGCAGATCATGTCT----AAAGATCTTC 976
BSNT_03337___ 983 CGATTGTCCAAGATCTGTTTCCATTTCCGGTAACAGCGGCGATTTTAAAA 1032
||.||.|..|...|.|||||||.|..|||||.|.|||.||.|||||||||
RBAM_020550__ 977 CGCTTTTGGAGCGTATGTTTCCTTGGCCGGTCAAAGCCGCTATTTTAAAA 1026
BSNT_03337___ 1033 GGGCAATCGCATTATTTATGCCTGTATAAATTTGAGCAGGTGCTTCATGA 1082
|||.||||.||||||.|.||||||..|||.|||||.||..|.||.|||||
RBAM_020550__ 1027 GGGAAATCACATTATCTGTGCCTGCCTAAGTTTGAACATATTCTGCATGA 1076
BSNT_03337___ 1083 AGAAGATGATAATTATGATGCCGTACTGACAAAGGCACAGCTTCTCGTTT 1132
.||||||||.||.||||||||.||..||||.||.||.|||||||||||.|
RBAM_020550__ 1077 GGAAGATGACAACTATGATGCGGTTTTGACGAAAGCGCAGCTTCTCGTCT 1126
BSNT_03337___ 1133 GGCTGACAGAGACAAATACAGGAGATGTAGCGGAACTGAATTTGCCTTCA 1182
|||||||.|||||..|.||.||.||.|..||.||.||||||.|.||.|||
RBAM_020550__ 1127 GGCTGACGGAGACTGAAACGGGCGACGCCGCTGAGCTGAATCTTCCATCA 1176
BSNT_03337___ 1183 GGCGGAAAATTGCTGTGGGACAGATTGGCTTATGACGATGACTCC----- 1227
|||||.|.||||||||||||..|..|||||||.||.|| ||.|.|
RBAM_020550__ 1177 GGCGGCAGATTGCTGTGGGAGCGCATGGCTTACGATGA-GAATTCTTTTT 1225
BSNT_03337___ 1228 -TATAAAA--GAAG---TCGCAGTGAGCATGTGATCGGTTTTTACGAGCG 1271
||.|||| |||| ||| || || .|||.|||||.||.||
RBAM_020550__ 1226 TTAAAAAAGGGAAGGACTCG------GC---TG-CCGGGTTTTATGAACG 1265
BSNT_03337___ 1272 GGCCAAACAGATTGCTTTGCGTTCC---GATTTGGTGATCACCAATCATT 1318
|||.|||.|.|..|| ||...|| |||.||.|.|||||.||.|||.
RBAM_020550__ 1266 GGCTAAAGAAAAAGC---GCAGGCCGCAGATCTGATTATCACAAACCATG 1312
BSNT_03337___ 1319 CTCTTTTGCTG---ACCGATGAAGGCAGCCA---GAAAAAAAGGCTTCCC 1362
| ||||||| .|.|||.||.||||..| ||||||| ||.||.
RBAM_020550__ 1313 C---TTTGCTGTTTTCAGATCAAAGCAGTGAAACGAAAAAA---CTGCCT 1356
BSNT_03337___ 1363 GAAAGCGGCACATTTATTATTGATGAAGCACACCATTTTGAACGTGCGGC 1412
|.||||||.|||.|.||.|||||||||||.||.|||||.|||||.||.||
RBAM_020550__ 1357 GCAAGCGGAACAATCATCATTGATGAAGCGCATCATTTCGAACGCGCCGC 1406
BSNT_03337___ 1413 AAGCGAACATTTAGGGAAAAGAGCTACGTACATAGAATTGCATACGAAAT 1462
.|||||.||..|.|||||.||||||.|.|||||.|.|.||||.||.||..
RBAM_020550__ 1407 CAGCGAGCACCTGGGGAAGAGAGCTTCATACATCGGACTGCACACAAAGC 1456
BSNT_03337___ 1463 TGAGCAGAATCGGCACTCTGAAGGAGCAGGGACTTCTAAAAAAGATGAGA 1512
|.|||.|||||||.||..|.|||||.||.|||||..||||...|||||||
RBAM_020550__ 1457 TCAGCCGAATCGGAACCTTAAAGGAACACGGACTGTTAAAGCGGATGAGA 1506
BSNT_03337___ 1513 CAGC-----TATTCCAGCGAAACAGCCTGCCGGTTGATTCA--TTTTTCG 1555
.|.| |||.|....||| |||||||..|| | |||||
RBAM_020550__ 1507 AAACTGTTTTATACGTATGAA-----CTGCCGGCGGA---AAGTTTTT-- 1546
BSNT_03337___ 1556 AATTG-----GAAGAGTGGCTTCAGCACGTTCAAGCAGAAAGTGATGCTT 1600
||| ||.||||||.|..||||..|||||.|.|||||.||.||.|
RBAM_020550__ 1547 --TTGACGCCGATGAGTGGATGAAGCATATTCAATCGGAAAGCGACGCAT 1594
BSNT_03337___ 1601 TCTTCAGCTCTGTACATTCTTTTGTCAAACGAAGAAAACCTAAAGAAGAC 1650
|.|||||.||.||.||||||||||||||||||||||||||||||||.||.
RBAM_020550__ 1595 TTTTCAGTTCAGTGCATTCTTTTGTCAAACGAAGAAAACCTAAAGACGAT 1644
BSNT_03337___ 1651 TTAAACCGTCTAGTGTTTAAGGTGAA-CAAAGAAAGCCAGGATAAAAGCT 1699
.|.||||||||.||.|.||...|.|| ||.| ||||||||||||||.|.|
RBAM_020550__ 1645 CTGAACCGTCTCGTTTATAGTCTCAATCATA-AAAGCCAGGATAAAGGGT 1693
BSNT_03337___ 1700 GGTC-GATCTTAACAGATGGTGCGGAGAGGCTTTGTTCCATGCTGACACA 1748
.|| .||..||||.||.||.||||||.||||||||.|.|||||| .|
RBAM_020550__ 1694 -TTCACATGATAACGGACGGAGCGGAGCGGCTTTGTGCGATGCTG---GA 1739
BSNT_03337___ 1749 TTTGCAGCAGCT-------TTTTGAGGCGCAGT-CATCCCTTATGGAAAA 1790
| ||||.||| |||| |||| || |||.||
RBAM_020550__ 1740 T---CAGCTGCTTGACATGTTTT------CAGTACA--------GGAGAA 1772
BSNT_03337___ 1791 ------ACAT-------TTGA--AGGGTATGAAGAGCAAAACCGTCTTTT 1825
|||| |||| || |||||.|||..|.|.|..||||
RBAM_020550__ 1773 ACTGTTACATCAAAAGCTTGATCAG---ATGAAAAGCGGAGCGGCTTTTT 1819
BSNT_03337___ 1826 TAGCCGATGAATACCAAA---GAAGCA------TGAAAGGCTTGCAGCAT 1866
||||.|..|||||...|| |.|.|| |||||| |.
RBAM_020550__ 1820 TAGCGGCCGAATATGTAAAGTGTATCAGGGGGCTGAAAG---------AA 1860
BSNT_03337___ 1867 TACTGTCAGACGTT--GCAGAAGCTCTTCTTTGGGTCTGATGACGATGAA 1914
||..|..|.||||| |||| |||..|.||||....||||||..|.|||
RBAM_020550__ 1861 TATCGCGATACGTTCAGCAG--GCTGCTGTTTGAAAATGATGAGAAAGAA 1908
BSNT_03337___ 1915 GCGGTTTGGATTGAAATAGATGCAAAGGGTGCGAAAAATG----CAGTGG 1960
||.||||||.|||||||.||.||.|||||.||.||||||| ||||
RBAM_020550__ 1909 GCCGTTTGGGTTGAAATTGACGCGAAGGGCGCAAAAAATGCCGTCAGT-- 1956
BSNT_03337___ 1961 CCATTTACGCACAGCCTCTTGAACCTGGTGAACTTCTGGCTGATCAGTTT 2010
||.||.||.||||||.|.||.||.||||||.|.|||||.||.||||||
RBAM_020550__ 1957 --ATCTATGCGCAGCCTTTGGAGCCCGGTGAAATGCTGGCAGACCAGTTT 2004
BSNT_03337___ 2011 TTCGCGCGCAAAAATAGTGTGGTGCTGACATCTGCAACCCTTACAGTCGA 2060
|||||.||||||||.||.||.|||||.|||||.||.|||.|.|..||.||
RBAM_020550__ 2005 TTCGCCCGCAAAAAAAGCGTTGTGCTCACATCAGCGACCTTAATGGTGGA 2054
BSNT_03337___ 2061 AGGTTCTTTTCAATTTATGATTGAACGACTGGGAC-TGAGTGACTTTTTC 2109
...||||||||||||||||||||||.|.||.|||| ||.| ||.||||..
RBAM_020550__ 2055 GCATTCTTTTCAATTTATGATTGAAAGGCTTGGACTTGCG-GATTTTTAT 2103
BSNT_03337___ 2110 CCGCGGACAATGAGAATTGAGTCACCTTTTTCTTACGATGAGCGTATGCA 2159
|||||.||.|..||.||...|||.|||||||||||.|||||.|..|||.|
RBAM_020550__ 2104 CCGCGCACCAAAAGCATCCCGTCTCCTTTTTCTTATGATGATCAGATGAA 2153
BSNT_03337___ 2160 GGTAATGATTCCAAAGGAAATGAAATCAATTCA-------GGATACCGGG 2202
.||.||.|||||.||.||.||||||||..||.| |||.|.|||
RBAM_020550__ 2154 CGTCATCATTCCGAAAGAGATGAAATCCGTTAAATATGACGGAGAGCGG- 2202
BSNT_03337___ 2203 CAACCTGAATTTATACAGGATACAGCCCGTTATATCGAACTGATGGCAAA 2252
|||.|.||..||.|||..|||...|||...|||.|.|||.||||
RBAM_020550__ 2203 ------GAAGTCATTGAGCATATTGCCAAGTATGCAGAAATCATGTCAAA 2246
BSNT_03337___ 2253 GGAAAAACAGCCTAAAATCCTTGTGCTGTTTACATCCCATGATATGCTGA 2302
||.|||||||||.||.||||||||.||||||||.||.|||||||||||||
RBAM_020550__ 2247 GGGAAAACAGCCGAAGATCCTTGTCCTGTTTACGTCTCATGATATGCTGA 2296
BSNT_03337___ 2303 AAAAGGTTCACCAGGAGCTCAAGCATAACATGAGTGCT-TCCGGCATTCA 2351
||||.||..|.|||||.||.||.|..|..||| |.|.| ||.||||||||
RBAM_020550__ 2297 AAAAAGTGTATCAGGAACTGAAACTCAGTATG-GAGATATCAGGCATTCA 2345
BSNT_03337___ 2352 GCTCTTGGCACAAGGGATTACAGGCGGGAGTCCCGGCAAACTGATGAAGA 2401
|||..|.||.|||||.|||.|.||||||||||||||.|||.|.|||||.|
RBAM_020550__ 2346 GCTTCTCGCCCAAGGTATTTCGGGCGGGAGTCCCGGTAAATTAATGAAAA 2395
BSNT_03337___ 2402 CTTTTAAAACATCCAATCAGGCGATCCTGCTCGGAACAAATCATTTTTGG 2451
|.||||||||..|.|..|.||||||..||||.||.||.||||||||.|||
RBAM_020550__ 2396 CCTTTAAAACGGCAAGCCGGGCGATTTTGCTTGGGACGAATCATTTCTGG 2445
BSNT_03337___ 2452 GAAGGCGTTGATTTCCCTGGTGATGAGCTGACAACAGTAATGATCGTGAG 2501
||||||||||||||.||.||.|||||..||.||||.||.|||||||..||
RBAM_020550__ 2446 GAAGGCGTTGATTTTCCGGGGGATGAATTGTCAACCGTCATGATCGCAAG 2495
BSNT_03337___ 2502 GCTCCCATTCCGGTCCCCTGATCACCCGCTTCATGCTGCAAAATGTGAGC 2551
.||.||.|||.||.|.|||||..|.|||||||||||.||||||||.||..
RBAM_020550__ 2496 ACTTCCTTTCAGGGCGCCTGACAATCCGCTTCATGCCGCAAAATGCGAAT 2545
BSNT_03337___ 2552 TAGCCCGCAAAAAA-----GGAAAGAATCCGTTTCAAACAGTGTCATTAC 2596
|.||| ||.|| ||||| |||||||||||.||..|.||..|.|
RBAM_020550__ 2546 TTGCC----AAGAAGCAGGGGAAA-AATCCGTTTCAGACGATTTCCCTGC 2590
BSNT_03337___ 2597 CGGAAGCTGTGCTGACCTTCAGGCAAGGAATCGGACGCTTGCTGCGTTCT 2646
|.||.||||||.|.||.||.||.||.||.|||||.|||.||||.|||.|.
RBAM_020550__ 2591 CTGAGGCTGTGTTAACGTTAAGACAGGGGATCGGGCGCCTGCTCCGTACG 2640
BSNT_03337___ 2647 GCGGGAGACAAGGGAACGATTATGATATTGGA-CAGACGGATTAAAACCG 2695
|||||||||||||||||.||..|..|.||.|| ||| ||..|.||.||.|
RBAM_020550__ 2641 GCGGGAGACAAGGGAACAATCGTTCTTTTAGATCAG-CGTGTAAAGACGG 2689
BSNT_03337___ 2696 CTGGTTACGGCCGGCTGTTTCTTGATGCCTTGCCGACAACCTCAGTATCC 2745
|.||.|||||.||||||||||||||.||..|.|||||..|.||..|.|..
RBAM_020550__ 2690 CGGGATACGGACGGCTGTTTCTTGAAGCGCTCCCGACTTCATCCCTTTTG 2739
BSNT_03337___ 2746 GAAATGACTGACAGCGAGCTTGAAGCTTATGTTGCAGGGGAAAAAGAATA 2795
||..||||.||...|||.||.|..|||||||| || |..|||..|||||
RBAM_020550__ 2740 GAGCTGACGGATGCCGAACTCGGGGCTTATGT--CA-GCCAAACGGAATA 2786
BSNT_03337___ 2796 A 2796
|
RBAM_020550__ 2787 A 2787
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.