Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03328 and RBAM_020480

See Amino acid alignment / Visit BSNT_03328 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:30
# Commandline: needle
#    -asequence dna-align/BSNT_03328.1.9828.seq
#    -bsequence dna-align/RBAM_020480___ypoC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03328-RBAM_020480___ypoC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03328-RBAM_020480___ypoC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03328
# 2: RBAM_020480___ypoC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 516
# Identity:     299/516 (57.9%)
# Similarity:   299/516 (57.9%)
# Gaps:         120/516 (23.3%)
# Score: 937.5
# 
#
#=======================================

BSNT_03328         1 ----------------------------ATGAA-----------------      5
                                                 |||||                 
RBAM_020480__      1 GTGACGGCGATTGACATTCTGGCAGGCTATGAAACATACCTGCGCAGCCT     50

BSNT_03328         6 ----------GAAAACCTTGCAGACCA------------------ATCCC     27
                               ||||.|||.| |||.||                  ||||.
RBAM_020480__     51 TACGGACTTGGAAAGCCTCG-AGATCAAAACGGCGCTGCGCCGCCATCCG     99

BSNT_03328        28 GTGTATTTTGATTTCTGC---------ACGGAATTACAAGGCGATTTGCC     68
                     .|||||.|.||||||.||         ||.|   |.||         |||
RBAM_020480__    100 CTGTATATGGATTTCAGCGGTCAGCCAACCG---TGCA---------GCC    137

BSNT_03328        69 ATGGGAGGACAGCGGGAAATACGTTCCGCTTTTATTTGAAGTGTGGGATG    118
                     ||||..|||.||.||..||||.||.|||.||.|.|||.|..|.|||.|.|
RBAM_020480__    138 ATGGAGGGAAAGGGGCGAATATGTCCCGTTTCTGTTTCAGATTTGGAACG    187

BSNT_03328       119 ACATCAAAGCATCACTTCTCCCAGTCTTTCAAACACGAAAATCGAGATGT    168
                     |.|..||||.|.|.||.||.||.||.|||||||||.||||||||||||||
RBAM_020480__    188 AAACGAAAGAAACGCTGCTTCCCGTTTTTCAAACAAGAAAATCGAGATGT    237

BSNT_03328       169 GACCAAAACGAAATGTTAAAGGGCATTGTGTGTTTGCTGGCTTCGTTACA    218
                     ||.|||||.||.|||.|.|||||.||||..|||.||.|.||..|.||.||
RBAM_020480__    238 GATCAAAATGACATGCTGAAGGGAATTGCCTGTCTGATTGCCGCTTTTCA    287

BSNT_03328       219 TTGGACAGCAGGTGAGCCGGTGAAATCGCTCGATTGGCAAGAACTGAGGG    268
                     .|||||.|||||.||||.|||.|.|||.|||||.|||     ||||.|..
RBAM_020480__    288 CTGGACGGCAGGGGAGCGGGTTACATCACTCGACTGG-----ACTGTGCT    332

BSNT_03328       269 AGAAATCA------TATCCCGCAAAGCCGATTAATTGGGCTGAACGAGTG    312
                     .|||| ||      |.||||||..|.|||||.||||||||.||.|||.||
RBAM_020480__    333 TGAAA-CAAAGCATTTTCCCGCCGAACCGATCAATTGGGCGGAGCGAATG    381

BSNT_03328       313 GAATTTATTCTTCTT----AAGCCGACCCAATACCATTGCTTTATTCAGC    358
                     |..||||||    ||    ||.|||||.||||..||.|..||||||||||
RBAM_020480__    382 GCGTTTATT----TTAACGAAACCGACTCAATTTCACTCGTTTATTCAGC    427

BSNT_03328       359 TTGATGAGCTGATTACCGAAATGAAAAAGCATTTTTATAAATATCATGCG    408
                     |.|||||..||||.||.||.|||||.||.||.|.|.||||||||.|.||.
RBAM_020480__    428 TGGATGAATTGATGACGGAGATGAAGAAACAATATCATAAATATGAAGCC    477

BSNT_03328       409 ATGAATC----GATAA    420
                     ||||| |    |.|||
RBAM_020480__    478 ATGAA-CAAATGTTAA    492


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