Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03325 and RBAM_020470

See Amino acid alignment / Visit BSNT_03325 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:30
# Commandline: needle
#    -asequence dna-align/BSNT_03325___ponA.1.9828.seq
#    -bsequence dna-align/RBAM_020470___ponA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03325___ponA-RBAM_020470___ponA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03325___ponA-RBAM_020470___ponA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03325___ponA
# 2: RBAM_020470___ponA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2860
# Identity:    1969/2860 (68.8%)
# Similarity:  1969/2860 (68.8%)
# Gaps:         311/2860 (10.9%)
# Score: 6770.0
# 
#
#=======================================

BSNT_03325___      1 ATGTCAGATCAATTTAACAGCCGTGAAGCTCGACGAAAAGCGAACAGCAA     50
                                                                       
RBAM_020470__      0 --------------------------------------------------      0

BSNT_03325___     51 GTCGAGCCCTTCACCGAAAAAAGGCAAGAAACGAAAAAAGGGCGGATTGT    100
                                                            |.||    |||
RBAM_020470__      1 ---------------------------------------GTGC----TGT      7

BSNT_03325___    101 TTAAAAAGACCCTT--TTCACTTTACTCATTCTGTTTGTTTTAGGCGTAG    148
                               ||||  ||          |||||||||||..|.|||.|||
RBAM_020470__      8 ----------CCTTGGTT----------ATTCTGTTTGTCCTTGGCATAG     37

BSNT_03325___    149 TCGGCGGCGCTGTTACATTTGCCGTTATGGTTTCAGATGCGCCGTCCCTT    198
                     |||||||.||.|...|||||||||||.|||||||.|..||||||||..|.
RBAM_020470__     38 TCGGCGGAGCGGCGGCATTTGCCGTTTTGGTTTCCGGCGCGCCGTCTTTG     87

BSNT_03325___    199 GATGAAAGCAAATTGAAGACGCCTTATTCATCAACGATTTATGATAAAAA    248
                     ||.|||..|||..||||.||||||||.||.|||||||||||.||||||||
RBAM_020470__     88 GACGAAGCCAAGCTGAAAACGCCTTACTCTTCAACGATTTACGATAAAAA    137

BSNT_03325___    249 TGGAAAAGAGATCGCCGAAGTCGGCGCCGAAAAACGGACCTACGTCTCGA    298
                     .||.|||||.|||||.|||||.||||..||||||||.|||||||||.|||
RBAM_020470__    138 CGGCAAAGAAATCGCGGAAGTGGGCGGTGAAAAACGAACCTACGTCCCGA    187

BSNT_03325___    299 TAGATGAAATTCCCGATGTTGTAAAAGAAGCCTTTATCGCGACAGAAGAC    348
                     |..|.||.||.|||||||||||.||||||||.||||||||.||.||||||
RBAM_020470__    188 TTAAGGATATACCCGATGTTGTGAAAGAAGCATTTATCGCAACTGAAGAC    237

BSNT_03325___    349 GCCCGTTTTTATGAGCACCACGGGATTGACCCTGTCCGTATCGGCGGTGC    398
                     ||||||||||||.||||||||||.||.|||||..||||.|||||.||.||
RBAM_020470__    238 GCCCGTTTTTATAAGCACCACGGTATAGACCCGATCCGGATCGGAGGCGC    287

BSNT_03325___    399 TTTAGTTGCCAACTTTAAAGACGGCTTCGGGGCTGAAGGCGGAAGTACGA    448
                     .||.||.||||||||||..||.||.|||||..|.||.||.|||||.||.|
RBAM_020470__    288 CTTGGTCGCCAACTTTACGGATGGATTCGGTTCAGAGGGAGGAAGCACAA    337

BSNT_03325___    449 TCACCCAGCAGGTCGTCAAAAACTCCCTTCTTTCACATCAGAAGACGTTG    498
                     |||||||||||||.||.||||||||.|||.|..|.||||||||.|||.|.
RBAM_020470__    338 TCACCCAGCAGGTTGTGAAAAACTCGCTTTTGACCCATCAGAAAACGATT    387

BSNT_03325___    499 AAACGGAAGGTCCAGGAAGTATGGCTTTCAATTCAGCTGGAGCGCAATTA    548
                     ||||||||.|..||||||||.|||||||||.|.||||||||||||.||||
RBAM_020470__    388 AAACGGAAAGCACAGGAAGTGTGGCTTTCACTGCAGCTGGAGCGCCATTA    437

BSNT_03325___    549 CTCTAAAGATGAAATTTTAGAAATGTATTTAAACCGGATTTATTTTTCTC    598
                     .||||||||||||||.||||||||||||||||||.|.||||||||.||.|
RBAM_020470__    438 TTCTAAAGATGAAATCTTAGAAATGTATTTAAACAGAATTTATTTCTCAC    487

BSNT_03325___    599 CTAGAGCATACGGAATCGGAAAAGCGGCGGAAGAATTTTTCGGCGTTACA    648
                     |..|.||.|||||..||||.||||||||.||||||||.||||||||.|.|
RBAM_020470__    488 CGCGCGCCTACGGCGTCGGTAAAGCGGCTGAAGAATTCTTCGGCGTAAAA    537

BSNT_03325___    649 GATTTAAGCAAATTGACTGTCGAACAGGCTGCCACACTGGCAGGAATGCC    698
                     ||.||.|||||..|.||.||.||||||||.||.||.||.||.||||||||
RBAM_020470__    538 GACTTGAGCAAGCTTACGGTTGAACAGGCGGCAACGCTTGCCGGAATGCC    587

BSNT_03325___    699 GCAGAGCCCGACAGCGTACAATCCCGTTAAAAACCCGGATAAAG----CG    744
                     |||.||||||||.|..||.||.||.||||||||.|||    |||    |.
RBAM_020470__    588 GCAAAGCCCGACCGGATATAACCCGGTTAAAAATCCG----AAGGCTTCC    633

BSNT_03325___    745 GAAAAACGACGGAACATCGTACTCAGTCTGATGAAAAAGCAAGGATTTAT    794
                     ||||||||.||||||||.||.||||||.|.|||.||||.||||||||.||
RBAM_020470__    634 GAAAAACGCCGGAACATTGTTCTCAGTTTAATGGAAAAACAAGGATTCAT    683

BSNT_03325___    795 TTCTGATTCTCAATATAACAAAGCGAAAAAAGTGGCAGTGAAAGACGAAG    844
                     |||..|||||.|.||..|.|||||.||.||||||.|..|||||||.||||
RBAM_020470__    684 TTCAAATTCTGACTACCAAAAAGCAAAGAAAGTGTCCATGAAAGATGAAG    733

BSNT_03325___    845 GCGTCGTGTCA--CAGAAGGAATATGAAAAAGCAAG--TACAAACAAATA    890
                     |||||  ||||  ||.||||||||.||.|||  |||  .|||||.|||||
RBAM_020470__    734 GCGTC--GTCAGCCAAAAGGAATACGATAAA--AAGGACACAAATAAATA    779

BSNT_03325___    891 CAGCGCATTTGTTGAAGAGGTTATGAAGGAAATTG------ATGAAAAAT    934
                     ||||||.|||||.|||||.||||||||.|||||||      |.|||||..
RBAM_020470__    780 CAGCGCTTTTGTCGAAGAAGTTATGAAAGAAATTGAGACAAAAGAAAAGA    829

BSNT_03325___    935 CTGATGTCGATCCATCTGCTGACGGATTAAAGATCTATACGACATTAGAT    984
                     ..||.|||.||...||..||||||||.|.||.||.||.|||||..|.|||
RBAM_020470__    830 AAGACGTCAATATTTCAACTGACGGACTGAAAATTTACACGACTCTTGAT    879

BSNT_03325___    985 ACAAAAGCACAAGATAAACTAGATGAATTAATGGACGGAGACACCGTCGG   1034
                     ||.||.|||||||||.|.||||||.||||.|||.||||||||||.|||||
RBAM_020470__    880 ACGAAGGCACAAGATTATCTAGATCAATTGATGAACGGAGACACGGTCGG    929

BSNT_03325___   1035 ATTTACTGAAGGCATGCAGGGCGGTGTGACGCTTCTCGATACCAAAAACG   1084
                     .|||.|.||||||||||||||.||.||.|||||.||.|||||.|.|||||
RBAM_020470__    930 CTTTTCGGAAGGCATGCAGGGAGGCGTCACGCTCCTTGATACGACAAACG    979

BSNT_03325___   1085 GAGAAGTCCGAGCGATTGGTGCGGGACGCAATCAG-CCTGTCGGAGGCTT   1133
                     |.|||.||||.||.||.||..|||||||.||| || .|||..||.||.||
RBAM_020470__    980 GGGAAATCCGCGCCATCGGACCGGGACGGAAT-AGAACTGCAGGCGGGTT   1028

BSNT_03325___   1134 TAACTATGCTACTCAAACT-AAGGCACAGCCTGGTTCGACCATAAAACCG   1182
                     ||||||.||.||..|.||| ||.|| |||||.||||||||.||.||||||
RBAM_020470__   1029 TAACTACGCGACAGATACTCAACGC-CAGCCAGGTTCGACGATTAAACCG   1077

BSNT_03325___   1183 ATTTTGGACTACGGACCAGTTATTGAAAATAAGAAATGGTCCACATACGA   1232
                     |||.|.||.|||||.||.||.||||||||.||.||||||||.||.||.||
RBAM_020470__   1078 ATTCTTGATTACGGGCCTGTCATTGAAAACAAAAAATGGTCGACGTATGA   1127

BSNT_03325___   1233 ACAAATTGATGACTCAGCTTATACGTATTCTAACGGAAAACCGATTCGTG   1282
                     .||.|||||.||.||.|||||.|||||.|||.|.||.|..|||||.|.||
RBAM_020470__   1128 GCAGATTGACGATTCCGCTTACACGTACTCTGATGGCACTCCGATACATG   1177

BSNT_03325___   1283 ATTGGGAC--------CGCAAATATCTAGGGCCTATCTCAATGCGTTACG   1324
                     ||||||||        |..||||||        .||.||||||||..|.|
RBAM_020470__   1178 ATTGGGACAATAAATACAGAAATAT--------GATATCAATGCGAGAGG   1219

BSNT_03325___   1325 CTCTGGCCCAATCAAGAAATATACCTGCTTTAAAAGCATTCCAGGCAGTC   1374
                     |.||.||..|.|||.|.|||||.||||||||||||||||.|||.||||..
RBAM_020470__   1220 CCCTCGCGGACTCACGTAATATTCCTGCTTTAAAAGCATACCAAGCAGCA   1269

BSNT_03325___   1375 GGTAAAGATACTGCTGTAGACTTTGCAAATGGACTCGGGCTTGG--TTTA   1422
                     ||.|||||||.|||.||.|||||.|||||| ||||..||.||||  ||.|
RBAM_020470__   1270 GGGAAAGATAATGCCGTCGACTTCGCAAAT-GACTTAGGATTGGGATTAA   1318

BSNT_03325___   1423 ACAAAAGATAATGTAACAGAGGCCTATTCTATTGGCGGTTTCGG---TGG   1469
                     || |||||||.||||||.||..|.|||||.||.||||||||.||   ||.
RBAM_020470__   1319 AC-AAAGATAGTGTAACGGAATCTTATTCGATCGGCGGTTTTGGAGCTGA   1367

BSNT_03325___   1470 GAA--CGATGGTGTTTCTCCTCTGACAATGGCAGGTGCATACAGCGCGTT   1517
                     .||  ||  ||.||||||||..||||||||||.||.||.|||||.||.||
RBAM_020470__   1368 TAATCCG--GGGGTTTCTCCAATGACAATGGCGGGCGCCTACAGTGCTTT   1415

BSNT_03325___   1518 TGGAAATAACGGAACGTATAATGAACCGCATTTTGTAAAATCTATCGAAT   1567
                     .|||||||||||.|||||.|||||||||||....||.|.|||.||.||||
RBAM_020470__   1416 CGGAAATAACGGTACGTACAATGAACCGCACGCGGTCACATCGATTGAAT   1465

BSNT_03325___   1568 TTAACGATGGCACGAAGCTTGACTTAACACCAAAATCAAAATCAGCCATG   1617
                     ||||.||.|||||.||||||||.|||||||||||..|.|||...||.|||
RBAM_020470__   1466 TTAATGACGGCACTAAGCTTGATTTAACACCAAAGCCGAAAAGTGCTATG   1515

BSNT_03325___   1618 AGTGATTATACTGCGTTTATGATTACAGATATGCTGAAAACAGCTGT-GA   1666
                     ||.||.||.||.|||||.|||.|||||||||||||.|||.||||||| ||
RBAM_020470__   1516 AGCGACTACACGGCGTTCATGGTTACAGATATGCTCAAATCAGCTGTCGA   1565

BSNT_03325___   1667 AGACAGGTACTGGACAGCTTGCACAAGTACCTGGTGTAGAAGTTGCAGGA   1716
                     | .||||.||.||..|.||.||.||||||||....||.|||||.||.||.
RBAM_020470__   1566 A-TCAGGAACAGGTAAACTGGCCCAAGTACCGAACGTGGAAGTGGCCGGT   1614

BSNT_03325___   1717 AAAACAGGAACGACTAACTTT------GATGATAATGAAGTCAAAAGGTA   1760
                     |||||.||.|||||.||||||      |.||||     |.|||||| .||
RBAM_020470__   1615 AAAACGGGTACGACCAACTTTACTAAAGGTGAT-----ATTCAAAA-ATA   1658

BSNT_03325___   1761 CAATATCGCTAGCGGTGGCGCCCGAGATTCTTGGTTCGTTGGCTACACAC   1810
                     .||||||||....||.||.|.||.|||.||.|||||.||.||.|||||.|
RBAM_020470__   1659 TAATATCGCACAAGGCGGAGTCCCAGACTCATGGTTTGTCGGATACACCC   1708

BSNT_03325___   1811 CGCAATATACAGCTGCCGTCTGGACGG-----GAA--TGGGAGAAAACGA   1853
                     |.||||||||.||.||.||.|||||.|     |||  |||.|..|||   
RBAM_020470__   1709 CTCAATATACTGCGGCGGTTTGGACTGGTGTAGAATCTGGTAATAAA---   1755

BSNT_03325___   1854 GGCTGGAAAGAAATCACTTTCAGCTGAAGAGCAAAAAGTTGCAAAGCGCA   1903
                      ||.||.||.||||||.|.||...||.|||.||..||||.|||||.||.|
RBAM_020470__   1756 -GCAGGTAAAAAATCATTATCTTATGCAGACCAGCAAGTCGCAAAACGGA   1804

BSNT_03325___   1904 TCTTCGCCCAGCTCATCGCCGATGTCGATGACGGAAGCGGATCATTTGAG   1953
                     |.||.....||||.|||.|..|.||.||||||||.|..|||...|||.||
RBAM_020470__   1805 TTTTTCAAAAGCTGATCTCATACGTTGATGACGGTAAAGGAAGCTTTAAG   1854

BSNT_03325___   1954 AAGCCTGACAGCGTAGTGGAAGCCACCGTAGAAAAAGGTTCTAATCCGGC   2003
                     .|||||||||||||.||..|||..||.||.||.|||||.||.|||||.||
RBAM_020470__   1855 CAGCCTGACAGCGTCGTAAAAGAAACAGTTGAGAAAGGCTCAAATCCTGC   1904

BSNT_03325___   2004 AAAAC----TGGCAGGGCCAAATACGCCAAGCGATAAGAAGCTCACAGAG   2049
                         |    |.||.||.|||||||||||....|||||.||..|.||.|||
RBAM_020470__   1905 ----CGCTTTAGCCGGACCAAATACGCCGGATGATAAAAAAGTGACGGAG   1950

BSNT_03325___   2050 TACTTTGTTAAAGG--CACAGCTCCTTCTACTGTTTCTAAAACATATGAG   2097
                     |||||.||.|||||  |.|||  ||..||.|.|||||||||||.||...|
RBAM_020470__   1951 TACTTCGTGAAAGGAACGCAG--CCAACTGCCGTTTCTAAAACGTACACG   1998

BSNT_03325___   2098 AAAGAAGAAAAAGAGGAAACAGCTAAACTGTCTGGTTTAAACGTGAAATA   2147
                     |   |||||||||      |.|.|||||.|.|.||.||..|.||||||||
RBAM_020470__   1999 A---AAGAAAAAG------CCGATAAACCGACAGGATTGCAAGTGAAATA   2039

BSNT_03325___   2148 CGATAAAGACAATCAATCTTTAACGTTAAGCTGGAATTACGACGGAGATG   2197
                     |||.|||||.||..||||.|||||.||||||||||||||.|||||.||||
RBAM_020470__   2040 CGACAAAGATAAAAAATCATTAACCTTAAGCTGGAATTATGACGGTGATG   2089

BSNT_03325___   2198 CGACCTTTGCTGTTAAGCAATCTGTTGACGGCGGCAGCTACTCGGAAATT   2247
                     |.||.||...|||.||.|||||.|||||||||||.||||||...||.|||
RBAM_020470__   2090 CAACATTCAATGTCAAACAATCCGTTGACGGCGGAAGCTACAGTGACATT   2139

BSNT_03325___   2248 CAAAACAGCTCTGCAAAAGAGGCAGTTATTTCGGGTGTGCA-GCCAGGAT   2296
                     ||||||||.||.||||||||.||.||..|.||.|.||| || .|||||.|
RBAM_020470__   2140 CAAAACAGTTCGGCAAAAGAAGCCGTCGTCTCAGATGT-CACACCAGGCT   2188

BSNT_03325___   2297 CTGTATACAAATTCGAAGTAACAGCCGTCAGTGATGATGGCAAAAG---T   2343
                     |...|||||..|||.|.||.|||||.|..|..|||||.||.|||||   |
RBAM_020470__   2189 CCACATACAGCTTCCAGGTGACAGCGGAAAACGATGACGGAAAAAGCGAT   2238

BSNT_03325___   2344 ACAGCTTCCACATCTTATGAGGTGCCAAAAGCT---GAAGACGATG----   2386
                     ||.||.||..||||||...|.||.||.||||.|   ||||||||||    
RBAM_020470__   2239 ACGGCATCAGCATCTTTCAAAGTCCCGAAAGATGAAGAAGACGATGCGGA   2288

BSNT_03325___   2387 --AAGATAAA---AAAGACCAGCAACAAACGGATGATGAAAAACAAGATG   2431
                       ||||||||   |..|||.|..||||.|.|..|||||||.|..||||..
RBAM_020470__   2289 TAAAGATAAAGCGACTGACGATGAACAGAAGTCTGATGAAGATAAAGACA   2338

BSNT_03325___   2432 ATGAGAAGACTCA---GGATGATACACAAACTGATGATTCTCAAAAAGAT   2478
                     |.||.|||||.||   .||||||.||.|.||.|||||...|||||.||||
RBAM_020470__   2339 AAGACAAGACGCAAACCGATGATTCAAACACAGATGACAATCAAACAGAT   2388

BSNT_03325___   2479 GACGGTCAGACGGATCAAGATCAGACAGATGATTCAACAAACGATCAAGA   2528
                      || |||.|||||||| .|||||.|||      .||||..|.||.|..||
RBAM_020470__   2389 -AC-GTCTGACGGATC-GGATCAAACA------CCAACTGATGACCCGGA   2429

BSNT_03325___   2529 CAAAAAACAAGA-CAATACGAACA----CCAATCCGTCCGACAACAATAA   2573
                     .|||||.||.|| ||||.|||..|    |.||     |.||.|||||.||
RBAM_020470__   2430 TAAAAATCAGGATCAATCCGATAAGGATCAAA-----CAGATAACAACAA   2474

BSNT_03325___   2574 CCAAGACCAATCA-AACGATAATGATAACGACAACAGT-AACAACCAGGA   2621
                     .||    .||||| ..||.|||.|..|.|||.||||.| .|| |.||.||
RBAM_020470__   2475 TCA----GAATCAGCCCGGTAACGGGACCGATAACAATGGAC-AGCAAGA   2519

BSNT_03325___   2622 T-ACG--TCGGATGGTGATTCGAACTCTGG-TAAGAATG----ATTCAAC   2663
                     | |||  ||.|||..||||||..|.||.|| |.|||..|    |.|.|||
RBAM_020470__   2520 TAACGGCTCTGATAATGATTCCGATTCCGGTTCAGACGGCTCAAATAAAC   2569

BSNT_03325___   2664 AGGTTCTGAC---------ACGAATAAAAATAAAACAGACACATCT---A   2701
                          |||||         |||.|.|||||..|   ||||.|||||   |
RBAM_020470__   2570 -----CTGACAGCGGTCAAACGGACAAAAACCA---AGACTCATCTTCAA   2611

BSNT_03325___   2702 ATA-AAAC--ACAAACAAACTC----ATCATCCATTGAAAAAACAAAT--   2742
                     ||| .|||  .||..|.||.||    |.||||||.|       |||||  
RBAM_020470__   2612 ATATCAACGGGCAGTCCAATTCGTCAACCATCCAGT-------CAAATCC   2654

BSNT_03325___   2743 ---TAA----   2745
                        |.|    
RBAM_020470__   2655 CGCTCATTAG   2664


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