Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03325 and RBAM_020470
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:30
# Commandline: needle
# -asequence dna-align/BSNT_03325___ponA.1.9828.seq
# -bsequence dna-align/RBAM_020470___ponA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03325___ponA-RBAM_020470___ponA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03325___ponA-RBAM_020470___ponA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03325___ponA
# 2: RBAM_020470___ponA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2860
# Identity: 1969/2860 (68.8%)
# Similarity: 1969/2860 (68.8%)
# Gaps: 311/2860 (10.9%)
# Score: 6770.0
#
#
#=======================================
BSNT_03325___ 1 ATGTCAGATCAATTTAACAGCCGTGAAGCTCGACGAAAAGCGAACAGCAA 50
RBAM_020470__ 0 -------------------------------------------------- 0
BSNT_03325___ 51 GTCGAGCCCTTCACCGAAAAAAGGCAAGAAACGAAAAAAGGGCGGATTGT 100
|.|| |||
RBAM_020470__ 1 ---------------------------------------GTGC----TGT 7
BSNT_03325___ 101 TTAAAAAGACCCTT--TTCACTTTACTCATTCTGTTTGTTTTAGGCGTAG 148
|||| || |||||||||||..|.|||.|||
RBAM_020470__ 8 ----------CCTTGGTT----------ATTCTGTTTGTCCTTGGCATAG 37
BSNT_03325___ 149 TCGGCGGCGCTGTTACATTTGCCGTTATGGTTTCAGATGCGCCGTCCCTT 198
|||||||.||.|...|||||||||||.|||||||.|..||||||||..|.
RBAM_020470__ 38 TCGGCGGAGCGGCGGCATTTGCCGTTTTGGTTTCCGGCGCGCCGTCTTTG 87
BSNT_03325___ 199 GATGAAAGCAAATTGAAGACGCCTTATTCATCAACGATTTATGATAAAAA 248
||.|||..|||..||||.||||||||.||.|||||||||||.||||||||
RBAM_020470__ 88 GACGAAGCCAAGCTGAAAACGCCTTACTCTTCAACGATTTACGATAAAAA 137
BSNT_03325___ 249 TGGAAAAGAGATCGCCGAAGTCGGCGCCGAAAAACGGACCTACGTCTCGA 298
.||.|||||.|||||.|||||.||||..||||||||.|||||||||.|||
RBAM_020470__ 138 CGGCAAAGAAATCGCGGAAGTGGGCGGTGAAAAACGAACCTACGTCCCGA 187
BSNT_03325___ 299 TAGATGAAATTCCCGATGTTGTAAAAGAAGCCTTTATCGCGACAGAAGAC 348
|..|.||.||.|||||||||||.||||||||.||||||||.||.||||||
RBAM_020470__ 188 TTAAGGATATACCCGATGTTGTGAAAGAAGCATTTATCGCAACTGAAGAC 237
BSNT_03325___ 349 GCCCGTTTTTATGAGCACCACGGGATTGACCCTGTCCGTATCGGCGGTGC 398
||||||||||||.||||||||||.||.|||||..||||.|||||.||.||
RBAM_020470__ 238 GCCCGTTTTTATAAGCACCACGGTATAGACCCGATCCGGATCGGAGGCGC 287
BSNT_03325___ 399 TTTAGTTGCCAACTTTAAAGACGGCTTCGGGGCTGAAGGCGGAAGTACGA 448
.||.||.||||||||||..||.||.|||||..|.||.||.|||||.||.|
RBAM_020470__ 288 CTTGGTCGCCAACTTTACGGATGGATTCGGTTCAGAGGGAGGAAGCACAA 337
BSNT_03325___ 449 TCACCCAGCAGGTCGTCAAAAACTCCCTTCTTTCACATCAGAAGACGTTG 498
|||||||||||||.||.||||||||.|||.|..|.||||||||.|||.|.
RBAM_020470__ 338 TCACCCAGCAGGTTGTGAAAAACTCGCTTTTGACCCATCAGAAAACGATT 387
BSNT_03325___ 499 AAACGGAAGGTCCAGGAAGTATGGCTTTCAATTCAGCTGGAGCGCAATTA 548
||||||||.|..||||||||.|||||||||.|.||||||||||||.||||
RBAM_020470__ 388 AAACGGAAAGCACAGGAAGTGTGGCTTTCACTGCAGCTGGAGCGCCATTA 437
BSNT_03325___ 549 CTCTAAAGATGAAATTTTAGAAATGTATTTAAACCGGATTTATTTTTCTC 598
.||||||||||||||.||||||||||||||||||.|.||||||||.||.|
RBAM_020470__ 438 TTCTAAAGATGAAATCTTAGAAATGTATTTAAACAGAATTTATTTCTCAC 487
BSNT_03325___ 599 CTAGAGCATACGGAATCGGAAAAGCGGCGGAAGAATTTTTCGGCGTTACA 648
|..|.||.|||||..||||.||||||||.||||||||.||||||||.|.|
RBAM_020470__ 488 CGCGCGCCTACGGCGTCGGTAAAGCGGCTGAAGAATTCTTCGGCGTAAAA 537
BSNT_03325___ 649 GATTTAAGCAAATTGACTGTCGAACAGGCTGCCACACTGGCAGGAATGCC 698
||.||.|||||..|.||.||.||||||||.||.||.||.||.||||||||
RBAM_020470__ 538 GACTTGAGCAAGCTTACGGTTGAACAGGCGGCAACGCTTGCCGGAATGCC 587
BSNT_03325___ 699 GCAGAGCCCGACAGCGTACAATCCCGTTAAAAACCCGGATAAAG----CG 744
|||.||||||||.|..||.||.||.||||||||.||| ||| |.
RBAM_020470__ 588 GCAAAGCCCGACCGGATATAACCCGGTTAAAAATCCG----AAGGCTTCC 633
BSNT_03325___ 745 GAAAAACGACGGAACATCGTACTCAGTCTGATGAAAAAGCAAGGATTTAT 794
||||||||.||||||||.||.||||||.|.|||.||||.||||||||.||
RBAM_020470__ 634 GAAAAACGCCGGAACATTGTTCTCAGTTTAATGGAAAAACAAGGATTCAT 683
BSNT_03325___ 795 TTCTGATTCTCAATATAACAAAGCGAAAAAAGTGGCAGTGAAAGACGAAG 844
|||..|||||.|.||..|.|||||.||.||||||.|..|||||||.||||
RBAM_020470__ 684 TTCAAATTCTGACTACCAAAAAGCAAAGAAAGTGTCCATGAAAGATGAAG 733
BSNT_03325___ 845 GCGTCGTGTCA--CAGAAGGAATATGAAAAAGCAAG--TACAAACAAATA 890
||||| |||| ||.||||||||.||.||| ||| .|||||.|||||
RBAM_020470__ 734 GCGTC--GTCAGCCAAAAGGAATACGATAAA--AAGGACACAAATAAATA 779
BSNT_03325___ 891 CAGCGCATTTGTTGAAGAGGTTATGAAGGAAATTG------ATGAAAAAT 934
||||||.|||||.|||||.||||||||.||||||| |.|||||..
RBAM_020470__ 780 CAGCGCTTTTGTCGAAGAAGTTATGAAAGAAATTGAGACAAAAGAAAAGA 829
BSNT_03325___ 935 CTGATGTCGATCCATCTGCTGACGGATTAAAGATCTATACGACATTAGAT 984
..||.|||.||...||..||||||||.|.||.||.||.|||||..|.|||
RBAM_020470__ 830 AAGACGTCAATATTTCAACTGACGGACTGAAAATTTACACGACTCTTGAT 879
BSNT_03325___ 985 ACAAAAGCACAAGATAAACTAGATGAATTAATGGACGGAGACACCGTCGG 1034
||.||.|||||||||.|.||||||.||||.|||.||||||||||.|||||
RBAM_020470__ 880 ACGAAGGCACAAGATTATCTAGATCAATTGATGAACGGAGACACGGTCGG 929
BSNT_03325___ 1035 ATTTACTGAAGGCATGCAGGGCGGTGTGACGCTTCTCGATACCAAAAACG 1084
.|||.|.||||||||||||||.||.||.|||||.||.|||||.|.|||||
RBAM_020470__ 930 CTTTTCGGAAGGCATGCAGGGAGGCGTCACGCTCCTTGATACGACAAACG 979
BSNT_03325___ 1085 GAGAAGTCCGAGCGATTGGTGCGGGACGCAATCAG-CCTGTCGGAGGCTT 1133
|.|||.||||.||.||.||..|||||||.||| || .|||..||.||.||
RBAM_020470__ 980 GGGAAATCCGCGCCATCGGACCGGGACGGAAT-AGAACTGCAGGCGGGTT 1028
BSNT_03325___ 1134 TAACTATGCTACTCAAACT-AAGGCACAGCCTGGTTCGACCATAAAACCG 1182
||||||.||.||..|.||| ||.|| |||||.||||||||.||.||||||
RBAM_020470__ 1029 TAACTACGCGACAGATACTCAACGC-CAGCCAGGTTCGACGATTAAACCG 1077
BSNT_03325___ 1183 ATTTTGGACTACGGACCAGTTATTGAAAATAAGAAATGGTCCACATACGA 1232
|||.|.||.|||||.||.||.||||||||.||.||||||||.||.||.||
RBAM_020470__ 1078 ATTCTTGATTACGGGCCTGTCATTGAAAACAAAAAATGGTCGACGTATGA 1127
BSNT_03325___ 1233 ACAAATTGATGACTCAGCTTATACGTATTCTAACGGAAAACCGATTCGTG 1282
.||.|||||.||.||.|||||.|||||.|||.|.||.|..|||||.|.||
RBAM_020470__ 1128 GCAGATTGACGATTCCGCTTACACGTACTCTGATGGCACTCCGATACATG 1177
BSNT_03325___ 1283 ATTGGGAC--------CGCAAATATCTAGGGCCTATCTCAATGCGTTACG 1324
|||||||| |..|||||| .||.||||||||..|.|
RBAM_020470__ 1178 ATTGGGACAATAAATACAGAAATAT--------GATATCAATGCGAGAGG 1219
BSNT_03325___ 1325 CTCTGGCCCAATCAAGAAATATACCTGCTTTAAAAGCATTCCAGGCAGTC 1374
|.||.||..|.|||.|.|||||.||||||||||||||||.|||.||||..
RBAM_020470__ 1220 CCCTCGCGGACTCACGTAATATTCCTGCTTTAAAAGCATACCAAGCAGCA 1269
BSNT_03325___ 1375 GGTAAAGATACTGCTGTAGACTTTGCAAATGGACTCGGGCTTGG--TTTA 1422
||.|||||||.|||.||.|||||.|||||| ||||..||.|||| ||.|
RBAM_020470__ 1270 GGGAAAGATAATGCCGTCGACTTCGCAAAT-GACTTAGGATTGGGATTAA 1318
BSNT_03325___ 1423 ACAAAAGATAATGTAACAGAGGCCTATTCTATTGGCGGTTTCGG---TGG 1469
|| |||||||.||||||.||..|.|||||.||.||||||||.|| ||.
RBAM_020470__ 1319 AC-AAAGATAGTGTAACGGAATCTTATTCGATCGGCGGTTTTGGAGCTGA 1367
BSNT_03325___ 1470 GAA--CGATGGTGTTTCTCCTCTGACAATGGCAGGTGCATACAGCGCGTT 1517
.|| || ||.||||||||..||||||||||.||.||.|||||.||.||
RBAM_020470__ 1368 TAATCCG--GGGGTTTCTCCAATGACAATGGCGGGCGCCTACAGTGCTTT 1415
BSNT_03325___ 1518 TGGAAATAACGGAACGTATAATGAACCGCATTTTGTAAAATCTATCGAAT 1567
.|||||||||||.|||||.|||||||||||....||.|.|||.||.||||
RBAM_020470__ 1416 CGGAAATAACGGTACGTACAATGAACCGCACGCGGTCACATCGATTGAAT 1465
BSNT_03325___ 1568 TTAACGATGGCACGAAGCTTGACTTAACACCAAAATCAAAATCAGCCATG 1617
||||.||.|||||.||||||||.|||||||||||..|.|||...||.|||
RBAM_020470__ 1466 TTAATGACGGCACTAAGCTTGATTTAACACCAAAGCCGAAAAGTGCTATG 1515
BSNT_03325___ 1618 AGTGATTATACTGCGTTTATGATTACAGATATGCTGAAAACAGCTGT-GA 1666
||.||.||.||.|||||.|||.|||||||||||||.|||.||||||| ||
RBAM_020470__ 1516 AGCGACTACACGGCGTTCATGGTTACAGATATGCTCAAATCAGCTGTCGA 1565
BSNT_03325___ 1667 AGACAGGTACTGGACAGCTTGCACAAGTACCTGGTGTAGAAGTTGCAGGA 1716
| .||||.||.||..|.||.||.||||||||....||.|||||.||.||.
RBAM_020470__ 1566 A-TCAGGAACAGGTAAACTGGCCCAAGTACCGAACGTGGAAGTGGCCGGT 1614
BSNT_03325___ 1717 AAAACAGGAACGACTAACTTT------GATGATAATGAAGTCAAAAGGTA 1760
|||||.||.|||||.|||||| |.|||| |.|||||| .||
RBAM_020470__ 1615 AAAACGGGTACGACCAACTTTACTAAAGGTGAT-----ATTCAAAA-ATA 1658
BSNT_03325___ 1761 CAATATCGCTAGCGGTGGCGCCCGAGATTCTTGGTTCGTTGGCTACACAC 1810
.||||||||....||.||.|.||.|||.||.|||||.||.||.|||||.|
RBAM_020470__ 1659 TAATATCGCACAAGGCGGAGTCCCAGACTCATGGTTTGTCGGATACACCC 1708
BSNT_03325___ 1811 CGCAATATACAGCTGCCGTCTGGACGG-----GAA--TGGGAGAAAACGA 1853
|.||||||||.||.||.||.|||||.| ||| |||.|..|||
RBAM_020470__ 1709 CTCAATATACTGCGGCGGTTTGGACTGGTGTAGAATCTGGTAATAAA--- 1755
BSNT_03325___ 1854 GGCTGGAAAGAAATCACTTTCAGCTGAAGAGCAAAAAGTTGCAAAGCGCA 1903
||.||.||.||||||.|.||...||.|||.||..||||.|||||.||.|
RBAM_020470__ 1756 -GCAGGTAAAAAATCATTATCTTATGCAGACCAGCAAGTCGCAAAACGGA 1804
BSNT_03325___ 1904 TCTTCGCCCAGCTCATCGCCGATGTCGATGACGGAAGCGGATCATTTGAG 1953
|.||.....||||.|||.|..|.||.||||||||.|..|||...|||.||
RBAM_020470__ 1805 TTTTTCAAAAGCTGATCTCATACGTTGATGACGGTAAAGGAAGCTTTAAG 1854
BSNT_03325___ 1954 AAGCCTGACAGCGTAGTGGAAGCCACCGTAGAAAAAGGTTCTAATCCGGC 2003
.|||||||||||||.||..|||..||.||.||.|||||.||.|||||.||
RBAM_020470__ 1855 CAGCCTGACAGCGTCGTAAAAGAAACAGTTGAGAAAGGCTCAAATCCTGC 1904
BSNT_03325___ 2004 AAAAC----TGGCAGGGCCAAATACGCCAAGCGATAAGAAGCTCACAGAG 2049
| |.||.||.|||||||||||....|||||.||..|.||.|||
RBAM_020470__ 1905 ----CGCTTTAGCCGGACCAAATACGCCGGATGATAAAAAAGTGACGGAG 1950
BSNT_03325___ 2050 TACTTTGTTAAAGG--CACAGCTCCTTCTACTGTTTCTAAAACATATGAG 2097
|||||.||.||||| |.||| ||..||.|.|||||||||||.||...|
RBAM_020470__ 1951 TACTTCGTGAAAGGAACGCAG--CCAACTGCCGTTTCTAAAACGTACACG 1998
BSNT_03325___ 2098 AAAGAAGAAAAAGAGGAAACAGCTAAACTGTCTGGTTTAAACGTGAAATA 2147
| ||||||||| |.|.|||||.|.|.||.||..|.||||||||
RBAM_020470__ 1999 A---AAGAAAAAG------CCGATAAACCGACAGGATTGCAAGTGAAATA 2039
BSNT_03325___ 2148 CGATAAAGACAATCAATCTTTAACGTTAAGCTGGAATTACGACGGAGATG 2197
|||.|||||.||..||||.|||||.||||||||||||||.|||||.||||
RBAM_020470__ 2040 CGACAAAGATAAAAAATCATTAACCTTAAGCTGGAATTATGACGGTGATG 2089
BSNT_03325___ 2198 CGACCTTTGCTGTTAAGCAATCTGTTGACGGCGGCAGCTACTCGGAAATT 2247
|.||.||...|||.||.|||||.|||||||||||.||||||...||.|||
RBAM_020470__ 2090 CAACATTCAATGTCAAACAATCCGTTGACGGCGGAAGCTACAGTGACATT 2139
BSNT_03325___ 2248 CAAAACAGCTCTGCAAAAGAGGCAGTTATTTCGGGTGTGCA-GCCAGGAT 2296
||||||||.||.||||||||.||.||..|.||.|.||| || .|||||.|
RBAM_020470__ 2140 CAAAACAGTTCGGCAAAAGAAGCCGTCGTCTCAGATGT-CACACCAGGCT 2188
BSNT_03325___ 2297 CTGTATACAAATTCGAAGTAACAGCCGTCAGTGATGATGGCAAAAG---T 2343
|...|||||..|||.|.||.|||||.|..|..|||||.||.||||| |
RBAM_020470__ 2189 CCACATACAGCTTCCAGGTGACAGCGGAAAACGATGACGGAAAAAGCGAT 2238
BSNT_03325___ 2344 ACAGCTTCCACATCTTATGAGGTGCCAAAAGCT---GAAGACGATG---- 2386
||.||.||..||||||...|.||.||.||||.| ||||||||||
RBAM_020470__ 2239 ACGGCATCAGCATCTTTCAAAGTCCCGAAAGATGAAGAAGACGATGCGGA 2288
BSNT_03325___ 2387 --AAGATAAA---AAAGACCAGCAACAAACGGATGATGAAAAACAAGATG 2431
|||||||| |..|||.|..||||.|.|..|||||||.|..||||..
RBAM_020470__ 2289 TAAAGATAAAGCGACTGACGATGAACAGAAGTCTGATGAAGATAAAGACA 2338
BSNT_03325___ 2432 ATGAGAAGACTCA---GGATGATACACAAACTGATGATTCTCAAAAAGAT 2478
|.||.|||||.|| .||||||.||.|.||.|||||...|||||.||||
RBAM_020470__ 2339 AAGACAAGACGCAAACCGATGATTCAAACACAGATGACAATCAAACAGAT 2388
BSNT_03325___ 2479 GACGGTCAGACGGATCAAGATCAGACAGATGATTCAACAAACGATCAAGA 2528
|| |||.|||||||| .|||||.||| .||||..|.||.|..||
RBAM_020470__ 2389 -AC-GTCTGACGGATC-GGATCAAACA------CCAACTGATGACCCGGA 2429
BSNT_03325___ 2529 CAAAAAACAAGA-CAATACGAACA----CCAATCCGTCCGACAACAATAA 2573
.|||||.||.|| ||||.|||..| |.|| |.||.|||||.||
RBAM_020470__ 2430 TAAAAATCAGGATCAATCCGATAAGGATCAAA-----CAGATAACAACAA 2474
BSNT_03325___ 2574 CCAAGACCAATCA-AACGATAATGATAACGACAACAGT-AACAACCAGGA 2621
.|| .||||| ..||.|||.|..|.|||.||||.| .|| |.||.||
RBAM_020470__ 2475 TCA----GAATCAGCCCGGTAACGGGACCGATAACAATGGAC-AGCAAGA 2519
BSNT_03325___ 2622 T-ACG--TCGGATGGTGATTCGAACTCTGG-TAAGAATG----ATTCAAC 2663
| ||| ||.|||..||||||..|.||.|| |.|||..| |.|.|||
RBAM_020470__ 2520 TAACGGCTCTGATAATGATTCCGATTCCGGTTCAGACGGCTCAAATAAAC 2569
BSNT_03325___ 2664 AGGTTCTGAC---------ACGAATAAAAATAAAACAGACACATCT---A 2701
||||| |||.|.|||||..| ||||.||||| |
RBAM_020470__ 2570 -----CTGACAGCGGTCAAACGGACAAAAACCA---AGACTCATCTTCAA 2611
BSNT_03325___ 2702 ATA-AAAC--ACAAACAAACTC----ATCATCCATTGAAAAAACAAAT-- 2742
||| .||| .||..|.||.|| |.||||||.| |||||
RBAM_020470__ 2612 ATATCAACGGGCAGTCCAATTCGTCAACCATCCAGT-------CAAATCC 2654
BSNT_03325___ 2743 ---TAA---- 2745
|.|
RBAM_020470__ 2655 CGCTCATTAG 2664
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