Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03321 and RBAM_020440

See Amino acid alignment / Visit BSNT_03321 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:29
# Commandline: needle
#    -asequence dna-align/BSNT_03321.1.9828.seq
#    -bsequence dna-align/RBAM_020440___sspM.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03321-RBAM_020440___sspM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03321-RBAM_020440___sspM.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03321
# 2: RBAM_020440___sspM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 138
# Identity:      85/138 (61.6%)
# Similarity:    85/138 (61.6%)
# Gaps:          36/138 (26.1%)
# Score: 335.0
# 
#
#=======================================

BSNT_03321         1 ATGCAAACGATACTTGTGAGGAGGTGCCGTATGAAAACAAGACCGAAAAA     50
                                                   ||||||||.|||||||||||
RBAM_020440__      1 ------------------------------ATGAAAACGAGACCGAAAAA     20

BSNT_03321        51 AGCCGG---CCAGCAAAAAAAGACTGAATCAAAGGCAATCGATTCTTTAG     97
                     .||.||   .|||||||||   ||.|||.||||..|.|..|||.|..|.|
RBAM_020440__     21 TGCAGGTAAACAGCAAAAA---ACCGAAGCAAAAACGACTGATACGCTTG     67

BSNT_03321        98 ATAAAAAATTAGGCGGCCCGAACCGCCCTTCTACGTAA    135
                     |||||||||||||||||||.|||||||||||.||||||
RBAM_020440__     68 ATAAAAAATTAGGCGGCCCAAACCGCCCTTCCACGTAA    105


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