Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03319 and RBAM_020430

See Amino acid alignment / Visit BSNT_03319 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:29
# Commandline: needle
#    -asequence dna-align/BSNT_03319___yppD.1.9828.seq
#    -bsequence dna-align/RBAM_020430___yppD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03319___yppD-RBAM_020430___yppD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03319___yppD-RBAM_020430___yppD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03319___yppD
# 2: RBAM_020430___yppD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 287
# Identity:     160/287 (55.7%)
# Similarity:   160/287 (55.7%)
# Gaps:          82/287 (28.6%)
# Score: 398.5
# 
#
#=======================================

BSNT_03319___      1 ATGTCCGGTTATGTATGCAAGACAGATATTCTCCGTATGCTTTCTGATAT     50
                     |||||.|.|||.....|||||.|.||||||||||||.|||||||||||||
RBAM_020430__      1 ATGTCTGTTTACACGAGCAAGGCTGATATTCTCCGTCTGCTTTCTGATAT     50

BSNT_03319___     51 AGAA---------------GATGAATTAACGCGA-GCTGAGCAAAGCCTG     84
                     .|||               |.||||  ||   || |||.|.|.||||   
RBAM_020430__     51 CGAATTCCGGATTTCTGCTGCTGAA--AA---GACGCTTACCCAAGC---     92

BSNT_03319___     85 AATC--ATTCTGTAAATGCATTAGAGGCTG-AGATGCGGGAAACGGA---    128
                     |.||  ||.||||          .||||.| ||.||..|.||.|.||   
RBAM_020430__     93 AGTCAGATCCTGT----------CAGGCGGAAGCTGAAGAAATCAGACAG    132

BSNT_03319___    129 ---AAACGAT--CGCC-TGAGTGTGCTGGAAGAAGAAATTATA-----GA    167
                        ||||..|  |||| |||       ||||||.|             ||
RBAM_020430__    133 GAGAAACTTTCCCGCCTTGA-------GGAAGAGG--------CGCGGGA    167

BSNT_03319___    168 TCTTCATATTTGTATAAATGAGCTGTATCAATCGCCTGA-------ACAC    210
                     .||||||.|||||||..||||.||||.|   |.|.||||       |.|.
RBAM_020430__    168 GCTTCATGTTTGTATTGATGACCTGTTT---TTGACTGACCGACGTAAAA    214

BSNT_03319___    211 AGG-TATGCGTTTGAGAAGGTATACCGCATCGGCTGA    246
                     ||| |.|||   .||||  |..|.|||.|||.|||||
RBAM_020430__    215 AGGATTTGC---CGAGA--GCCTGCCGGATCAGCTGA    246


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