Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03317 and RBAM_020420
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:29
# Commandline: needle
# -asequence dna-align/BSNT_03317___yppE.1.9828.seq
# -bsequence dna-align/RBAM_020420___yppE.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03317___yppE-RBAM_020420___yppE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03317___yppE-RBAM_020420___yppE.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03317___yppE
# 2: RBAM_020420___yppE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 400
# Identity: 263/400 (65.8%)
# Similarity: 263/400 (65.8%)
# Gaps: 59/400 (14.8%)
# Score: 842.0
#
#
#=======================================
BSNT_03317___ 1 TTGCTATCACAAACTTTGCTGGAAATGACCGAGCAAATGATTGA---AGT 47
||||...||||..|.||..||||..||||.||.||||||||.|| .||
RBAM_020420__ 1 TTGCAGACACAGTCGTTATTGGAGCTGACAGAACAAATGATAGAGGCGGT 50
BSNT_03317___ 48 T------GCTGAAAAAGGCGCTGATCGGTATCAGGAAGGGAAAAACAGTA 91
| ||.|||||| .||||||||||.|| ||||.|||.
RBAM_020420__ 51 TCTGGAAGCCGAAAAA---------AGGTATCAGGATGG--AAAAGAGTC 89
BSNT_03317___ 92 A--TCATTCTTATGATTTTTTTGAGACGATAAAGCCTGCAGTTGAAGAGA 139
| .|.|||.||||||||||||||||..||.||.||.|..||||||.|
RBAM_020420__ 90 AGGCCGTTCATATGATTTTTTTGAGATTATTAAACCCGATGTTGAAAA-- 137
BSNT_03317___ 140 ATGATGA-ACTGGC--TGCTCGC--TGGGCAGAGGGTGCTCTTGAATTGA 184
|.|| ||.||| |||.||| |||.||||.|..||.||||..||.|
RBAM_020420__ 138 ---AAGAGACCGGCTTTGCGCGCTTTGGACAGAAGCAGCGCTTGCGTTTA 184
BSNT_03317___ 185 T-----AAAAGTCCGCCGGCCAAAATATGTGCATAAAGAGCAAATTGAGG 229
| |||| |||.||.||||||||.|||.|.|..||||||.|||
RBAM_020420__ 185 TTCAGGAAAA-----CCGTCCGAAATATGTTCATCACGCACAAATTCAGG 229
BSNT_03317___ 230 CCGTAAAGGATAATTTCCTGGAATTGGTCCTTCAATCTTATGTTCATCAT 279
||||.|..||.||||||...||..||.|.||.|||||.||||||||||||
RBAM_020420__ 230 CCGTTACAGAAAATTTCGGAGAGCTGATGCTCCAATCATATGTTCATCAT 279
BSNT_03317___ 280 ATTCATAAAAAACGATTCAAGGACATCACTGAGTCAGTCCTTTATACATT 329
||||||||||||.|||.||.|||..|.|||||.||.|| ||||||
RBAM_020420__ 280 ATTCATAAAAAAAGATACAGGGATTTAACTGAATCTGT--TTTATA---- 323
BSNT_03317___ 330 GCACGC-------AGTAAAGGATGAAATTGCAAGAGAAGACAGCCGGTAA 372
.|||| |.|||.|||||||||||.||.|||||.||||.|.
RBAM_020420__ 324 -TACGCTTCGTATATTAAGGGATGAAATTGAAAAAGAAGGCAGCTGA--- 369
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