Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03316 and RBAM_020410

See Amino acid alignment / Visit BSNT_03316 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:29
# Commandline: needle
#    -asequence dna-align/BSNT_03316___yppF.1.9828.seq
#    -bsequence dna-align/RBAM_020410___yppF.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03316___yppF-RBAM_020410___yppF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03316___yppF-RBAM_020410___yppF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03316___yppF
# 2: RBAM_020410___yppF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 189
# Identity:     160/189 (84.7%)
# Similarity:   160/189 (84.7%)
# Gaps:           6/189 ( 3.2%)
# Score: 698.0
# 
#
#=======================================

BSNT_03316___      1 ATGAACGTATCATACTTAAGCAAACGTTTTGCAGAAATGAAGAAATATGA     50
                     ||||||||||||||||||||.||.||||||||.|||.||||.||||||||
RBAM_020410__      1 ATGAACGTATCATACTTAAGAAAGCGTTTTGCTGAAGTGAAAAAATATGA     50

BSNT_03316___     51 AACAGACTGTATGAATAAACTGATGGACTTTGCCAAGTTCCTCTATATTC    100
                     ||||||.|||....|||||||||||||||||||.||.|||||||||||||
RBAM_020410__     51 AACAGATTGTGCAGATAAACTGATGGACTTTGCAAAATTCCTCTATATTC    100

BSNT_03316___    101 AAGGACATCTCAGCATAACTGAGTTTCGTAACAGTATGAAGGTTCTCGAA    150
                     ||||.|||||||.|..|||.||.|||||.|||||||||||||||||||||
RBAM_020410__    101 AAGGCCATCTCACCGCAACCGAATTTCGAAACAGTATGAAGGTTCTCGAA    150

BSNT_03316___    151 GCAAATGGAGCAGAAAGCCCGGCATATGAGATGAATTAA    189
                     ||||.|||||||||||.||||||.||||| ||.|     
RBAM_020410__    151 GCAAGTGGAGCAGAAAACCCGGCGTATGA-ATAA-----    183


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