Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03306 and RBAM_020360
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:28
# Commandline: needle
# -asequence dna-align/BSNT_03306___yprB.1.9828.seq
# -bsequence dna-align/RBAM_020360___yprB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03306___yprB-RBAM_020360___yprB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03306___yprB-RBAM_020360___yprB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03306___yprB
# 2: RBAM_020360___yprB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1297
# Identity: 916/1297 (70.6%)
# Similarity: 916/1297 (70.6%)
# Gaps: 113/1297 ( 8.7%)
# Score: 3138.0
#
#
#=======================================
BSNT_03306___ 1 ATGTCATTAAAAGGGAAACTCCAGCGGATGAAAAAGCACATG---GCGCT 47
|||||.||.|||...|||.|..|||||||||||||.|||.|| |.||
RBAM_020360__ 1 ATGTCCTTGAAAAATAAATTAAAGCGGATGAAAAACCACCTGAATGTGC- 49
BSNT_03306___ 48 CGACGAAGGAGAACAAAAAATAGAAGCAGGCA----AACAAGAAAACCAC 93
|| ||||..|||.|| ||||.|||| .||| ||
RBAM_020360__ 50 CG--GAAGCTGAAAAA-------AAGCCGGCAGCTTCACA--------AC 82
BSNT_03306___ 94 TTT--------GATGA--CA--TCCCGTTTTTAGAAGAGTGGGAGGCTTT 131
||| ||| | || ||||.|||..||||||.||||||||.||
RBAM_020360__ 83 TTTCGGTCCCGGAT-ATTCAAGTCCCATTTAGAGAAGAATGGGAGGCATT 131
BSNT_03306___ 132 TGGCATGAAGCCTTTCATCTTCGAAGATGAATATTGCCTCATCAGAGAAG 181
.||..|||||||||||.|.||.||.||||||||.||.||.|||.|.|||.
RBAM_020360__ 132 CGGAGTGAAGCCTTTCTTTTTTGAGGATGAATACTGTCTTATCCGCGAAA 181
BSNT_03306___ 182 TAGAATATCCGCTTTCTCACCGCCATGGGTTATACAGCTTTTCTGAGCTT 231
..|..|||||||||||.||||||||.||....||||||||...|||||||
RBAM_020360__ 182 CCGTCTATCCGCTTTCGCACCGCCACGGACGGTACAGCTTCAGTGAGCTT 231
BSNT_03306___ 232 GAGGAAGTGATCACACTGTGGAATCAAAGCGGCCTGTCGCATACGTTGTC 281
||.||.||.||..||.|.||||||.||.||||..||.|.|||||.||.||
RBAM_020360__ 232 GATGACGTCATGGCATTATGGAATAAAGGCGGTTTGACACATACTTTATC 281
BSNT_03306___ 282 AGCAAAAGGGTATAACAAAAACAACCTCTTTTTCTTTGATACAGAAACAA 331
||||.||||.||..|.||||.|.|.||.||.|||||||||||.|||||.|
RBAM_020360__ 282 AGCAGAAGGATACGAAAAAAGCCAGCTGTTCTTCTTTGATACTGAAACGA 331
BSNT_03306___ 332 CCGGTCTTGGGGGCGGAGCTGGGAATACCATTTTTTTGCTTGGGCATGCG 381
||||.||.||.|||||.||.||.||||..||.||||||||.||.|||||.
RBAM_020360__ 332 CCGGCCTCGGCGGCGGGGCCGGCAATATGATCTTTTTGCTCGGTCATGCA 381
BSNT_03306___ 382 AGAGTATATGAAGACCGAGTGACAGTCAAACAGCATCTTTTGCCCAAACC 431
|||||.|||||||||||.||..|.||.|||||||||||..|.||.|||||
RBAM_020360__ 382 AGAGTGTATGAAGACCGTGTCGCGGTTAAACAGCATCTGCTTCCTAAACC 431
BSNT_03306___ 432 GGGGAACGAAGTCGCCT-TGTACCAAAGCTTTTTAAGCGAGGTTGACATT 480
|||.|||| ||.||.|| |.|||.|||||||||||||.||||||||||||
RBAM_020360__ 432 GGGAAACG-AGACGGCTCTTTACAAAAGCTTTTTAAGTGAGGTTGACATT 480
BSNT_03306___ 481 ACATCACTTGTGACCTACAACGGCAAAGCCTTTGATTGGCCGCAGGTGAA 530
||.||.|||||.||.||.|||||.|||||||||||.|||||||||||.||
RBAM_020360__ 481 ACGTCTCTTGTTACGTATAACGGAAAAGCCTTTGACTGGCCGCAGGTAAA 530
BSNT_03306___ 531 AACAAGGCACACCTTGATCCGTGACAGACTTCCGAAGCTTCCGGAGTTTG 580
|||.|||||.||.|||.||||.|||||.||||||||.|||||.||.||.|
RBAM_020360__ 531 AACTAGGCATACATTGCTCCGGGACAGGCTTCCGAAACTTCCTGACTTCG 580
BSNT_03306___ 581 GCCACTTTGATCTTTTGCATGGAGCTAGACGCCTGTGGAAACACAAAATG 630
|.||||||||||||.||||.||.||.|||||.||.||||||||.|||.|.
RBAM_020360__ 581 GTCACTTTGATCTTCTGCACGGGGCGAGACGGCTTTGGAAACATAAATTA 630
BSNT_03306___ 631 GACCGTGTATCTCTT--GGCACGGTTGAAAAAGAGGAGCTCGGCATCCGC 678
||.||||||||.||| || ||||||||||.||.||||| .||
RBAM_020360__ 631 GAGCGTGTATCGCTTTCGG--CGGTTGAAAATGAAGAGCT-------TGC 671
BSNT_03306___ 679 -------AGGCTAGAAGACACACCGGGCTACTTGGCGCCAATGCTTTACT 721
|||...||||||||.||.||.||.||||||||.|||||.||.|
RBAM_020360__ 672 TTTTAAAAGGGACGAAGACACCCCTGGTTATTTGGCGCCGATGCTGTATT 721
BSNT_03306___ 722 TTCATTTTATCAAGGCGCAAGAGCCGGATCTTTTAAAAGGTGTCCTGCAT 771
||||.|||.|.||||||.|.||.||||.|||||||||.||.||.||....
RBAM_020360__ 722 TTCAATTTTTAAAGGCGGAGGATCCGGCTCTTTTAAAGGGAGTGCTCTCG 771
BSNT_03306___ 772 CATAATGAAATGGATGTGTTATCACTCATTTCATTGTACATCCATATGTC 821
|||||||||...||||||.|.||.|||||..|..|.||||||||||||||
RBAM_020360__ 772 CATAATGAACAAGATGTGCTTTCCCTCATCGCTCTTTACATCCATATGTC 821
BSNT_03306___ 822 TAAAAAAATCCT------TTCAGAATCACATGCGCCAAAAGAAC-ACAGT 864
.|||||.||..| |||.| ||||.| ||.| ||||| .|||
RBAM_020360__ 822 AAAAAAGATTTTTGCATCTTCTG-ATCAGA--CGTC---AGAACGTCAG- 864
BSNT_03306___ 865 GAAGCCTATGCTATGGCGAAATGGTTTATGGCTCATAAAGAAACGGACCA 914
|||||.||.||.|||||||||||||||||.||||||||||||||.||.|.
RBAM_020360__ 865 GAAGCATACGCCATGGCGAAATGGTTTATCGCTCATAAAGAAACCGATCG 914
BSNT_03306___ 915 AGC-GATGAAGCAGTTGGAAAGGCTTATAGAAAAATCGTTTGAGGA-CCA 962
.|| |.|..| |||.|||||..|||...||..|||.|.|||||.|| .||
RBAM_020360__ 915 GGCTGTTTCA-CAGCTGGAAGCGCTGCAAGGCAAAGCCTTTGAAGATTCA 963
BSNT_03306___ 963 GGACAGTGCACGGCTGGATTTATCGCTCCTGTACAAAAAACAAAATCGCT 1012
||..|.||.|...|.||.|||.|..|.||.||.|||||||||||.|||.
RBAM_020360__ 964 -GATCGGGCCCTTTTTGACTTAGCAATGCTTTATAAAAAACAAAACCGCA 1012
BSNT_03306___ 1013 TGGAAGAAGCAGTGCCGCTTTGGGAAAAGCTGTCCCGCTCGCAAAACCAG 1062
.|.||||.||.|||||.||||||||.||.|||.|..||||..|....||.
RBAM_020360__ 1013 GGCAAGACGCCGTGCCCCTTTGGGAGAAACTGACGGGCTCTGATCTTCAC 1062
BSNT_03306___ 1063 AAGTGCAGGTAC---GCTGCTGTAATAGAGCTCGCGAAATATTTTGAGCA 1109
|..|||||..|| .|.||.| |||||||.||||..|||||||||||
RBAM_020360__ 1063 ATATGCAGACACCAATCAGCGG---TAGAGCTGGCGATCTATTTTGAGCA 1109
BSNT_03306___ 1110 TAAGAAAAAAAAATTCGGAAAAGCATTGCAAATAGCAGAGCAATTGCTTA 1159
|.|...||||.|.|.|..||||||..|||| .||.|.|| |
RBAM_020360__ 1110 TCACGCAAAAGATTACAAAAAAGCTCTGCA---GGCCGCGC--------A 1148
BSNT_03306___ 1160 GCGATGCGGCA--------------TGCTTATCAGAGAAAGAAACTGAAA 1195
|| |.|||||| | ||.||.||||||.||||.|
RBAM_020360__ 1149 GC-AGGCGGCAGAAGACGGGGAAATT-----TCGGAAAAAGAAGCTGAGA 1192
BSNT_03306___ 1196 AACTGCATGTGAGAATTGCCCGGCTGAAGAGGAAATATTCCTCTTAA 1242
|.||.||||||||||||||||||||.|||||||||||||||||||.|
RBAM_020360__ 1193 AGCTCCATGTGAGAATTGCCCGGCTTAAGAGGAAATATTCCTCTTGA 1239
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