Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03302 and RBAM_020330

See Amino acid alignment / Visit BSNT_03302 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:28
# Commandline: needle
#    -asequence dna-align/BSNT_03302___ypsB.1.9828.seq
#    -bsequence dna-align/RBAM_020330___ypsB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03302___ypsB-RBAM_020330___ypsB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03302___ypsB-RBAM_020330___ypsB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03302___ypsB
# 2: RBAM_020330___ypsB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 301
# Identity:     268/301 (89.0%)
# Similarity:   268/301 (89.0%)
# Gaps:           5/301 ( 1.7%)
# Score: 1218.0
# 
#
#=======================================

BSNT_03302___      1 ATGCTTGCTGATAAAGTAAAGCTTTCTGCGAAAGAAATTTTGGAAAAAGA     50
                     |||||||||||||||||||||||||||||||||||.||||||||||||||
RBAM_020330__      1 ATGCTTGCTGATAAAGTAAAGCTTTCTGCGAAAGACATTTTGGAAAAAGA     50

BSNT_03302___     51 ATTTAAAACAGGCGTTAGAGGCTACAAGCAAGAAGACGTTGACAAATTTT    100
                     |||||||||||||||||||||.||||..||||||||||||||||||||||
RBAM_020330__     51 ATTTAAAACAGGCGTTAGAGGTTACAGACAAGAAGACGTTGACAAATTTT    100

BSNT_03302___    101 TAGATATGATTATTAAGGATTATGAAACCTTCCATCAAGAAATTGAAGAA    150
                     |||||||||||||||||||||||||||||||.||||||||||||||||||
RBAM_020330__    101 TAGATATGATTATTAAGGATTATGAAACCTTTCATCAAGAAATTGAAGAA    150

BSNT_03302___    151 CTGCAGCAGGAAAATCTTCAGCTGAAAAAACAGCTTGAAGAAGCAAGTAA    200
                     .|||||||.||||||||.|||||||||||||||||||||||||||||.||
RBAM_020330__    151 TTGCAGCAAGAAAATCTGCAGCTGAAAAAACAGCTTGAAGAAGCAAGCAA    200

BSNT_03302___    201 AAAACAGCCTGTGCAATCTAACACAACAAACTTTGATATTTTAAAACGGC    250
                     |||||||||.|||||.||.||.||.||.||||||||.|||.|.|||.|||
RBAM_020330__    201 AAAACAGCCGGTGCAGTCCAATACGACCAACTTTGACATTCTGAAAAGGC    250

BSNT_03302___    251 TGTCTAACTTAGAAAAACACGTTTTTGGCAGCAAGCTTTATGATTGA---    297
                     ||||.|||.|.||.|||||.||.||.||||||||.|||||||| .||   
RBAM_020330__    251 TGTCCAACCTTGAGAAACATGTATTCGGCAGCAAACTTTATGA-CGAATA    299

BSNT_03302___    297 -    297
                      
RBAM_020330__    300 G    300


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