Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03299 and RBAM_020280
See
Amino acid alignment /
Visit
BSNT_03299 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:28
# Commandline: needle
# -asequence dna-align/BSNT_03299___ypvA.1.9828.seq
# -bsequence dna-align/RBAM_020280___ypvA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03299___ypvA-RBAM_020280___ypvA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03299___ypvA-RBAM_020280___ypvA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03299___ypvA
# 2: RBAM_020280___ypvA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1932
# Identity: 1543/1932 (79.9%)
# Similarity: 1543/1932 (79.9%)
# Gaps: 18/1932 ( 0.9%)
# Score: 6174.5
#
#
#=======================================
BSNT_03299___ 1 GTGACAACATCACGTTTGCCTTTTTCTTTAACGAAAACAAAGAATTTTTA 50
||||||||||||||||||||||||.|||||||.|||..||||||||||||
RBAM_020280__ 1 GTGACAACATCACGTTTGCCTTTTGCTTTAACAAAAGAAAAGAATTTTTA 50
BSNT_03299___ 51 TGAAGAATTGAACAATTGGATTGGTGACGTGTTTTACGATATCCTTCCCG 100
.|||||||||||||||||||||||||||||||||||||||||||||||||
RBAM_020280__ 51 CGAAGAATTGAACAATTGGATTGGTGACGTGTTTTACGATATCCTTCCCG 100
BSNT_03299___ 101 AAAAAGGGTTTGATCTTCGGGACGAGCAAGTATTTATGGCTTTTCAGCTG 150
|.|||||.|||||.||||||||.|||||.|||||||||||.||||||||.
RBAM_020280__ 101 AGAAAGGCTTTGACCTTCGGGATGAGCAGGTATTTATGGCGTTTCAGCTT 150
BSNT_03299___ 151 GAGCGGGCGTTTAAAGAGAAAAAAGTCATGTTCGCCGAAGCTGGAGTGGG 200
||.|||||.||||||||||||||||||||||||||.||.||.|||||.||
RBAM_020280__ 151 GAACGGGCATTTAAAGAGAAAAAAGTCATGTTCGCTGAGGCAGGAGTCGG 200
BSNT_03299___ 201 AACGGGGAAAACGCTGGTTTATCTTCTTTTTGCAATCAGCTATGCAAGGT 250
.|||||||||||||||||.|||||.||.|||||.|||||||||||.||.|
RBAM_020280__ 201 TACGGGGAAAACGCTGGTGTATCTGCTGTTTGCCATCAGCTATGCCAGAT 250
BSNT_03299___ 251 ATGTCGGCAAACCCGCCATCATCGCTTGTGCAGATGAAACATTAATTGAA 300
||...||.|||||.|||||.|||||.||.||.||||||||.|||||||||
RBAM_020280__ 251 ATACGGGTAAACCGGCCATTATCGCATGCGCCGATGAAACGTTAATTGAA 300
BSNT_03299___ 301 CAGCTGGTGAAAAAAGAGGGCGATATTTCTAAGCTGGCTGAGCATCTTGA 350
|||||.||.||||||||.|||||.|||||.||||||.|.||.|||.|.||
RBAM_020280__ 301 CAGCTTGTCAAAAAAGAAGGCGACATTTCCAAGCTGACAGAACATTTGGA 350
BSNT_03299___ 351 TCTGAAAATTGATACAAGACTGTCAAAATCACATGAACAATATTTATGCT 400
||||.|.|||||||||.|.|||||.|||||.|||||.||.|||.|.||..
RBAM_020280__ 351 TCTGCAGATTGATACACGGCTGTCCAAATCCCATGAGCAGTATCTGTGTC 400
BSNT_03299___ 401 TGAAGAAGCTTGAAAAAACAATGCAGCGTTCTGATGATGATAAATGGCTG 450
||||.||||||||.|||||.||||||||||||||||||||.||.||||||
RBAM_020280__ 401 TGAAAAAGCTTGAGAAAACGATGCAGCGTTCTGATGATGAAAAGTGGCTG 450
BSNT_03299___ 451 GATCTTTATGAGTCGTTACCGTCATTTGTCCACGAGTCACAGGCGATGCA 500
|||||||||||||||.|.||.|||||.||.|||||.|||||.||||||||
RBAM_020280__ 451 GATCTTTATGAGTCGCTGCCTTCATTCGTACACGAATCACAAGCGATGCA 500
BSNT_03299___ 501 GCGCTTTTATCCGTATGGCGACCGTAAGCAGTACGCAAATCTATCGAATG 550
|||||||||||||||.||.|||||.||.||||||||..||.|..||||||
RBAM_020280__ 501 GCGCTTTTATCCGTACGGTGACCGCAAACAGTACGCTGATTTGACGAATG 550
BSNT_03299___ 551 AAGAGTGGTCTGACGTAAGCTACGACTCGTTTCAGGACTGTCTGACTTGT 600
||||||||.|.|.|||.|||||.||.||.||.||.||.|||.|.||||||
RBAM_020280__ 551 AAGAGTGGGCAGGCGTCAGCTATGATTCCTTCCAAGATTGTTTAACTTGT 600
BSNT_03299___ 601 GATATGAGACACAGATGCGGTCTGACACTTTCCAGAGATTACTATCGCAA 650
|||||||||||.|||||||||.|.||||||||.||||||.|.||..|.||
RBAM_020280__ 601 GATATGAGACATAGATGCGGTTTAACACTTTCGAGAGATCATTACAGAAA 650
BSNT_03299___ 651 GTCAACGGACTTAATCATATGTTCCCATGATTTTTATATGGAGCATGTGT 700
.||||||||..|.||..|.||.|||||||||||.||.|||||||||||.|
RBAM_020280__ 651 ATCAACGGATCTGATTGTTTGCTCCCATGATTTCTACATGGAGCATGTAT 700
BSNT_03299___ 701 GGACGGAAGAATCACGCAAACGAGAGGGCCAGCTGCCGCTCTTGCCTGAT 750
||||||||||||||||||||.|.||.||.|||||||||||.|||||||||
RBAM_020280__ 701 GGACGGAAGAATCACGCAAAAGGGAAGGACAGCTGCCGCTTTTGCCTGAT 750
BSNT_03299___ 751 CATAGTGCAGTTGTATTTGATGAGGGGCACTTGTTAGAGTTTGCTGCGCA 800
||.||.||.||.||.||||||||.||.||..||.|.||.||.||.|||||
RBAM_020280__ 751 CACAGCGCCGTCGTGTTTGATGAAGGACATCTGCTGGAATTCGCCGCGCA 800
BSNT_03299___ 801 AAAAGCGCTAACCTATAGAGTGAAGCAGTCTACTCTTGAATTGTTTTTAG 850
|||||||.||||.|||.|.|||||||||||.||.|||||..|||||||||
RBAM_020280__ 801 AAAAGCGTTAACGTATCGCGTGAAGCAGTCGACGCTTGAGCTGTTTTTAG 850
BSNT_03299___ 851 AACGATTGCTGCAAAATGACATCAGAGAAGAGTTTGCAGAATTGATTGAA 900
|.||..||||.||||||||.||||||||.||.||.||.|||.||||||||
RBAM_020280__ 851 AGCGTCTGCTTCAAAATGATATCAGAGAGGAATTCGCCGAACTGATTGAA 900
BSNT_03299___ 901 GATGCGCTTCTCGCAAACGACGAATTTTTCTATGTTCTTTCTGAAGAATC 950
|||||.|||..|||||||||.||.|||||||||||.||.||.||.|||||
RBAM_020280__ 901 GATGCCCTTGCCGCAAACGATGAGTTTTTCTATGTGCTGTCAGAGGAATC 950
BSNT_03299___ 951 AAAGGAAGTAGCCGGTTCACACCGTTTAGAAATAAAAAATGACCAGCGTG 1000
.||||||.|.||.||.||.|||||.||.||.||..||||.||.|||||||
RBAM_020280__ 951 GAAGGAAATCGCAGGCTCTCACCGATTGGACATCCAAAACGATCAGCGTG 1000
BSNT_03299___ 1001 TCAAAAAGGCGGCGGACGAGCTTTGCCGTTTACTTGATAAAATCGGTGAG 1050
|.||....|||||.|||||.||.||||||.|.||.|||||||||||.|||
RBAM_020280__ 1001 TTAAGCGTGCGGCTGACGAACTGTGCCGTCTGCTCGATAAAATCGGCGAG 1050
BSNT_03299___ 1051 GCACTTGTATTTGAGTCTGAAATGTATACGATTGATCAATACGAGTTGTC 1100
||.||.||||||||.||.||||||||||||||.|||.|.||||||.||||
RBAM_020280__ 1051 GCGCTCGTATTTGAATCGGAAATGTATACGATCGATAAGTACGAGCTGTC 1100
BSNT_03299___ 1101 AGTAGTGGAAGAATACGTTGAACAAATGGCGTATTCATTATCTCTATATC 1150
|||.||.|||||||||||.|||||||||||.|||||..|.||.||.||||
RBAM_020280__ 1101 AGTTGTAGAAGAATACGTCGAACAAATGGCATATTCGCTGTCGCTGTATC 1150
BSNT_03299___ 1151 AAAAGGATGCAATCAGCTGGCTGGAGAAAAAGGAAGCAGAATCAACTTTT 1200
||||||||||.|||||||||||.||.|..|.|||..||||.|||||.|||
RBAM_020280__ 1151 AAAAGGATGCCATCAGCTGGCTTGAAACGAGGGATACAGACTCAACGTTT 1200
BSNT_03299___ 1201 GTCGTGATGCCGAGAACGGTAGCAGAAGTACTTGGCGAAAAAGTGTTTTC 1250
||.||.|||||||||||.|||||.|||||..|.||.|||||.||.|||||
RBAM_020280__ 1201 GTTGTTATGCCGAGAACTGTAGCCGAAGTTTTGGGAGAAAAGGTCTTTTC 1250
BSNT_03299___ 1251 TAAGAAAATTCCTTATATCTTTTCTTCTGCTACGCTGTCAGAAGGCGGTT 1300
|||.||.||||||||||||||.||.||.||.||.||.||.||.|||||||
RBAM_020280__ 1251 TAAAAAGATTCCTTATATCTTCTCATCGGCCACTCTTTCTGAGGGCGGTT 1300
BSNT_03299___ 1301 CGTTTGATTATATTGCCGACAGTCTTGGGATTCATGATTATTTGTCATTA 1350
|.|||||||||||.||.|||||.||.||.||.|.||||..|||.|||||.
RBAM_020280__ 1301 CATTTGATTATATCGCTGACAGCCTCGGAATCCGTGATCCTTTATCATTC 1350
BSNT_03299___ 1351 ACTGTTGATTCCCCTTATGATTATGACGAGCAAATGAGTATTAATCTATA 1400
||.|||||.||.||.||.|||||.||.|||||||||..|.||...||..|
RBAM_020280__ 1351 ACCGTTGAATCTCCGTACGATTACGAGGAGCAAATGTCTGTTGCGCTTCA 1400
BSNT_03299___ 1401 CGCAAAAACAGATATGGCCGCTGAACAAAAAACGGCTGAAACGATTGAAA 1450
|| ..||.|||.|..||||.||.|||||.||.|||||||||||||
RBAM_020280__ 1401 CG------GTGACATGACGTCTGAGCAGAAAACAGCCGAAACGATTGAAA 1444
BSNT_03299___ 1451 CAATCA-----AACGTTACAAAGGAAGAACGCTGGTGCTTTTCCCTTCTT 1495
|.||.| ||.| |||||.|.||.||.||.|||||||||||.|
RBAM_020280__ 1445 CCATTAAGAAGAATG-----AAGGACGCACCCTCGTTCTTTTCCCTTCCT 1489
BSNT_03299___ 1496 TTGAAGAATTAAACGAGTTTAAAGAGCTGTCGGCGGCATGGGAGCTGCCG 1545
|||||||..|.||.||.||||||||.|.|.|.||.||.||||||||||||
RBAM_020280__ 1490 TTGAAGACATGAAGGAATTTAAAGAACAGGCTGCCGCGTGGGAGCTGCCG 1539
BSNT_03299___ 1546 TATCCAATTTTCTTCGAAGGTGATGAGGAAATCAGCAGCTTAGTAGAGAA 1595
|||||.||.|.||.|||||||||.||.||.|||..|||..|.||.||.||
RBAM_020280__ 1540 TATCCGATATACTACGAAGGTGACGAAGAGATCTCCAGTCTGGTCGAAAA 1589
BSNT_03299___ 1596 ATTCCAAGAGGAAGAGGAAACAGTACTTTGTTCAGTTCACTTATGGGAAG 1645
||||||...|||.||.|||.|.||.||||||||.||.|||||||||||||
RBAM_020280__ 1590 ATTCCAGCGGGATGAAGAATCCGTGCTTTGTTCCGTCCACTTATGGGAAG 1639
BSNT_03299___ 1646 GACTCGATATTCCCGGTGACGCATTGAAGAATGTTACCATTTGGTCATTG 1695
|.||.||.||||||||||||.|..|...||||||.|||||||||.|.|||
RBAM_020280__ 1640 GTCTTGACATTCCCGGTGACTCGCTCCGGAATGTGACCATTTGGGCGTTG 1689
BSNT_03299___ 1696 CCTTTCCCGCCACACGATCCTGTATTTACAGCGAAGCGCAACGGAGCGAA 1745
||.|..|||||.||.|||||.||.|||||.||.|||||.|||||||||||
RBAM_020280__ 1690 CCGTATCCGCCTCATGATCCCGTGTTTACCGCAAAGCGGAACGGAGCGAA 1739
BSNT_03299___ 1746 AAAGGATCCGTTCGAAGAAGTTGATCTGCCATATATGTTGTTACGTGTAC 1795
|||.||||||||.||.|||||||||||.||.||.|||.|.||..|.||.|
RBAM_020280__ 1740 AAAAGATCCGTTTGAGGAAGTTGATCTTCCGTACATGCTCTTGAGAGTCC 1789
BSNT_03299___ 1796 GGCAGGGCATCGGGCGCCTGATTCGCTCGAATCAAGACAGCGGCTCGAT- 1844
|||||||.|||||.|||||.||.||.||.|||||.||||||||..|.||
RBAM_020280__ 1790 GGCAGGGAATCGGCCGCCTCATCCGTTCTAATCAGGACAGCGGAACCATA 1839
BSNT_03299___ 1845 TCACATTTACGCTGGCGGAGAAAATGAACGCATCATTGATGAGGTCAAAA 1894
|| ||||||.||.||||||||||.||||||..||.|.|..||.|||||||
RBAM_020280__ 1840 TC-CATTTATGCGGGCGGAGAAAGTGAACGGGTCTTGGCCGAAGTCAAAA 1888
BSNT_03299___ 1895 AGGTCTTGCCTGTTGAACCGCACATGATGTAA 1926
||.|||||||||||..||||.|.||..|.|||
RBAM_020280__ 1889 AGATCTTGCCTGTTACACCGAAAATCGTATAA 1920
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.