Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03290 and RBAM_020270
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:27
# Commandline: needle
# -asequence dna-align/BSNT_03290___ypwA.1.9828.seq
# -bsequence dna-align/RBAM_020270___ypwA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03290___ypwA-RBAM_020270___ypwA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03290___ypwA-RBAM_020270___ypwA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03290___ypwA
# 2: RBAM_020270___ypwA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1538
# Identity: 1162/1538 (75.6%)
# Similarity: 1162/1538 (75.6%)
# Gaps: 67/1538 ( 4.4%)
# Score: 4303.0
#
#
#=======================================
BSNT_03290___ 1 ATGGAGATACATACATATGAAAAAGAATTTTTTGATCTTTTAAAAAGAAT 50
|||||..|||||||||||||||||||.|||||||||||.|||||||||.|
RBAM_020270__ 1 ATGGATTTACATACATATGAAAAAGAGTTTTTTGATCTGTTAAAAAGAGT 50
BSNT_03290___ 51 CTCACATTACAGCGAAGCAGTTGCGTTAATGCACTGGGACTCCAGAACAG 100
.||.||.||...||||||..||||..|.|||||.|||||||..|||||.|
RBAM_020270__ 51 ATCCCACTATGTCGAAGCCATTGCACTTATGCATTGGGACTTAAGAACGG 100
BSNT_03290___ 101 GAGCGCCGAAAAACGGCTCAGAGGATCGTGCCGAAAGCATCGGCCAGCTT 150
||||.||.|||||.|||||.||.||.||.||.|||||||||||.|||||.
RBAM_020270__ 101 GAGCCCCAAAAAAAGGCTCTGATGACCGGGCGGAAAGCATCGGACAGCTG 150
BSNT_03290___ 151 TCAACAGA--TATATTCAATATCCAAACATCAGATCGAATGAAGGAGCTT 198
||..|.|| | |.||||| |||||.|||||.||.||.|||||.|||||.
RBAM_020270__ 151 TCGGCTGACGT-TTTTCAA-ATCCAGACATCCGACCGGATGAAAGAGCTG 198
BSNT_03290___ 199 ATCGATGTCCT------GTATGAACGATTTGATGACTTGTCGGAAGATAC 242
|||||..|||| |.|||.| ||.||..||.|.||||||||
RBAM_020270__ 199 ATCGACATCCTTCTCGCGCATGCA------GAAGAGCTGCCTGAAGATAC 242
BSNT_03290___ 243 GAAAAAAGCAGTGGAACTGGCGAAAAAAGAGTACGAAGAGAATAAGAAAA 292
....|||||.|.||||||.|||||||||||.||.||..|.|||||.||||
RBAM_020270__ 243 AGTGAAAGCGGCGGAACTTGCGAAAAAAGATTATGATCATAATAAAAAAA 292
BSNT_03290___ 293 TCCCTGAGGCTGAATACAAAGAATACGTGATTCTGTGTTCAAAGGCAGAA 342
|.|||||.|.|||.||.||||||||.||.|||.|....||.||.||.|||
RBAM_020270__ 293 TTCCTGAAGATGAGTATAAAGAATATGTCATTTTAACATCGAAAGCTGAA 342
BSNT_03290___ 343 ACAGCGTGGGAGGAAGCGAAAGGAAAA-----TCTGATTTCAGCT-TGTT 386
||.||.||||||||.|| ||||| |||||||| ..|| ||||
RBAM_020270__ 343 ACGGCTTGGGAGGATGC-AAAGG----CTGCCTCTGATTT-TTCTATGTT 386
BSNT_03290___ 387 TTCTCCTTA--TTTAGAACAGCTGATTGAATTCAATAAACGTTTTATTAC 434
|.||||.|| ||.||| ||||||||||.||.|||||.||.||||||.|
RBAM_020270__ 387 TGCTCCGTACCTTGAGA--AGCTGATTGATTTTAATAAGCGGTTTATTTC 434
BSNT_03290___ 435 GTATTGGGGATATCAAGAGCATCCTTATGATGCATTGCTTGATTTGTTTG 484
|||||||||.|||.||||.|||||.||..|.||||||||.|||.|.||.|
RBAM_020270__ 435 GTATTGGGGCTATGAAGATCATCCATACAACGCATTGCTCGATATTTTCG 484
BSNT_03290___ 485 AGCCCGGCGTCACGGTAAAGGTGCTTGATCAGCTGTTTACTGAGCTGAAG 534
|.||.||.||.||||||||||||||.||||||||||||.||||..|||||
RBAM_020270__ 485 AACCGGGTGTTACGGTAAAGGTGCTGGATCAGCTGTTTTCTGAATTGAAG 534
BSNT_03290___ 535 GAAGCGGTTATCCCTCTTGTTAAACAGGTGACAGCTTCCGGAAATAAACC 584
||||||.||||.||.|||.|.|||.|.|||||.|..|||||.||||||||
RBAM_020270__ 535 GAAGCGATTATTCCGCTTATCAAAAAAGTGACGGAATCCGGCAATAAACC 584
BSNT_03290___ 585 AGATACAAGCTTTCTTACAAAAGCGTTCCCGAAAGAAAAGCAA-AAAGAG 633
.||.||...||||.|.||.|||.||||..|||||||| ||| ||||||
RBAM_020270__ 585 GGACACTTCCTTTATAACGAAAACGTTTTCGAAAGAA---CAACAAAGAG 631
BSNT_03290___ 634 CTCAGTC--TGTATTTTTTACAGGAGCTTGGCTACGATTTTGATGGCGGA 681
|.|..|| |||||||.|||.|.|||.|.||.||.||||||||.|||||.
RBAM_020270__ 632 CCCTCTCCTTGTATTTCTTAAAAGAGTTCGGGTATGATTTTGACGGCGGC 681
BSNT_03290___ 682 AGACTTGATGAAACCGTTCATCCGTTTGCAACTACGCTGAATCGGGGAGA 731
.|.||.||.||.||.||.|||||||||||.||.||..|.||.|||||.||
RBAM_020270__ 682 CGCCTGGACGAGACGGTGCATCCGTTTGCGACGACAATCAACCGGGGCGA 731
BSNT_03290___ 732 CGTTCGGGTCACGACGAGATATGATGAAAAAGATTTCCGGACGGCGATCT 781
.||.|||||.|||||.||||||||.|||||.||||||||.||||||||.|
RBAM_020270__ 732 TGTGCGGGTAACGACCAGATATGACGAAAACGATTTCCGCACGGCGATTT 781
BSNT_03290___ 782 TTGGCACCATTCATGAGTGCGGGCACGCGATTTACGAGCAAAATATTGAT 831
|.||.||.||||||||.||||||||.|||||.||||||||.||||||||.
RBAM_020270__ 782 TCGGAACGATTCATGAATGCGGGCATGCGATCTACGAGCAGAATATTGAC 831
BSNT_03290___ 832 GAAGCACTCAGTGGCACGAATTTGTCAGACGGCGCATCAATGGGAATTCA 881
|||||..|.||.||.|||||.||.||.|||||.|||||.|||||||||||
RBAM_020270__ 832 GAAGCGTTGAGCGGAACGAACTTATCTGACGGTGCATCCATGGGAATTCA 881
BSNT_03290___ 882 TGAATCGCAATCATTATTTTACGAGAATTTTATCGGCCGCAA-CAAGCAT 930
||||||.|||||.||||||||.||.||.|||||||.|.|.|| ||| |||
RBAM_020270__ 882 TGAATCCCAATCGTTATTTTATGAAAACTTTATCGCCAGAAATCAA-CAT 930
BSNT_03290___ 931 TTTTGGACACCGTACTATCAGAAGATTCAAGAAGCATCACCTGAAC-AGT 979
||.|||||..|.||.|||.|.||.||....||.||.||||||||.| |.|
RBAM_020270__ 931 TTCTGGACCGCCTATTATGAAAAAATGGTTGAGGCTTCACCTGATCAATT 980
BSNT_03290___ 980 TCAAG---------GACATCTCCCTGGATGATTTTGTCCGGGCAATCAAT 1020
||||| || ||.||.|||||.||.||..|.|||
RBAM_020270__ 981 TCAAGATGTGAAAAGA----------GAGGACTTTGTACGCGCCGTAAAT 1020
BSNT_03290___ 1021 GAATCAAAACCTTCATTTATCAGGGTCGAAGCGGATGAATTAACGTATCC 1070
||..|.|||||..|.||||||.|..|.|||||.|||||..|.||.|||||
RBAM_020270__ 1021 GAGGCGAAACCAACCTTTATCCGAATTGAAGCCGATGAGCTGACATATCC 1070
BSNT_03290___ 1071 TCTTCATATCATCATCCGTTATGAAATTGAAAAAGCGATTTTTAGCAATG 1120
.|||||.||.||.|||||||||||||||||||||||||||||.|||||||
RBAM_020270__ 1071 GCTTCACATTATTATCCGTTATGAAATTGAAAAAGCGATTTTCAGCAATG 1120
BSNT_03290___ 1121 AAGTGTCTGTGGAAGATCTGCCGTCGCTCTGGAATCAAAAATACCAGGAT 1170
|||||.|.||||||||.|||||..|..|.||||||||||||||.||.|||
RBAM_020270__ 1121 AAGTGACAGTGGAAGAACTGCCTGCATTGTGGAATCAAAAATATCATGAT 1170
BSNT_03290___ 1171 TATTTAGGGATTACACCGCAGACCGACGCAGAGGGGATTTTACAGGACGT 1220
||||||||.|||||.||||...|.||||||.|.||.|||||.||||||||
RBAM_020270__ 1171 TATTTAGGCATTACGCCGCCATCTGACGCAAAAGGCATTTTGCAGGACGT 1220
BSNT_03290___ 1221 CCATTGGGCAGGTGGAGATTTCGGCTACTTCCCATCCTATGCGCTCGGCT 1270
.||||||||.||.||.|||||||||||.|||||.||||||||||||||.|
RBAM_020270__ 1221 ACATTGGGCGGGCGGCGATTTCGGCTATTTCCCTTCCTATGCGCTCGGAT 1270
BSNT_03290___ 1271 ACATGTATGCGGCTCAGCTGAAACAAAAAATGCTTGAGGATCTCCCTGAA 1320
|.|||||||||||.||||||||.||.|..||||||||.|||||.||||||
RBAM_020270__ 1271 ATATGTATGCGGCACAGCTGAAGCATACCATGCTTGACGATCTGCCTGAA 1320
BSNT_03290___ 1321 TTTGACGCTCTCTTGGAAAGAGGAGAGTTCCATCCGATAAAGCAATGGCT 1370
||||||....|..|.|||.|.||.||.||..|.|||||.||.||||||||
RBAM_020270__ 1321 TTTGACCAATTAATAGAACGGGGCGATTTTGAGCCGATTAAACAATGGCT 1370
BSNT_03290___ 1371 GACGGAAAAGGTGCA-CATTCACGGAAAACGGAAAAAGCCGTTAGACATT 1419
|||.||||||||.|| || .|||||||.|||.||||.||||.|.|||||.
RBAM_020270__ 1371 GACAGAAAAGGTTCATCA-GCACGGAAGACGCAAAATGCCGCTTGACATC 1419
BSNT_03290___ 1420 ATTAAAGATGCAACAGGAGAAGAGCTGAATGTTCGCTATTTAATTGATTA 1469
||.|||||||||||.||||||||||||||.||||..|||.|.|||||.||
RBAM_020270__ 1420 ATAAAAGATGCAACGGGAGAAGAGCTGAACGTTCAATATCTCATTGAGTA 1469
BSNT_03290___ 1470 T-TTATCAAACAAATATTCAAATCTCTATCTGTCATAA 1506
| |..|| ..|||||||||||||.|.||| |.||||
RBAM_020270__ 1470 TCTCGTC-GGCAAATATTCAAATTTATAT---TTATAA 1503
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