Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03288 and RBAM_020250
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:27
# Commandline: needle
# -asequence dna-align/BSNT_03288___pbuX.1.9828.seq
# -bsequence dna-align/RBAM_020250___pbuX.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03288___pbuX-RBAM_020250___pbuX.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03288___pbuX-RBAM_020250___pbuX.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03288___pbuX
# 2: RBAM_020250___pbuX
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1333
# Identity: 975/1333 (73.1%)
# Similarity: 975/1333 (73.1%)
# Gaps: 44/1333 ( 3.3%)
# Score: 3487.0
#
#
#=======================================
BSNT_03288___ 1 ATGAGAAATGGATTCGGCAAAACGCTGTCTTTAGGGATTCAGCATGTTCT 50
||||.|||.||.|..|.||||||.||.||..|.||.||.|||||.||.||
RBAM_020250__ 1 ATGAAAAACGGCTATGCCAAAACACTTTCCCTCGGTATCCAGCACGTGCT 50
BSNT_03288___ 51 CGCCATGTATGCCGGCGCCATTGTCGTTCCTCTGATTGTCGGAAAAGCAA 100
.||||||||||||||||||.|.||||||||..|.|||||.|||...|||.
RBAM_020250__ 51 TGCCATGTATGCCGGCGCCGTCGTCGTTCCCTTAATTGTAGGAGCGGCAT 100
BSNT_03288___ 101 TGGGACTGACCGTCGAGCAGCTGACTTACTTAGTATCAATTGATATTTTT 150
|||||||||.||..||.||||||||.||..|.|||||||||||.||||||
RBAM_020250__ 101 TGGGACTGAACGCAGAACAGCTGACATATCTCGTATCAATTGACATTTTT 150
BSNT_03288___ 151 ATGTGCGGTGTGGCTACACTTCTGCAAGTGTGGAGCAACCGATTTTTTGG 200
||||||||.|.||||||.||.||.|||||.|||||.||...||.|||.||
RBAM_020250__ 151 ATGTGCGGGGCGGCTACGCTGCTTCAAGTATGGAGGAATAAATGTTTCGG 200
BSNT_03288___ 201 GATCGGGCTT-CCGGTAGTGCTTGGATGTACCTTTACAGCTGTATCGCCA 249
.||| ||||| ||.||.|||||.||.|||||.||.||.||.|||.||||.
RBAM_020250__ 201 CATC-GGCTTGCCCGTTGTGCTCGGCTGTACGTTCACCGCGGTAGCGCCG 249
BSNT_03288___ 250 ATGATTGCGATTGGATCTGAATATGGGGTTTCAACAGTTTACGGCAGCAT 299
||.|||.|.||.||....||.||.|||.|||||.|..|||||||.|||||
RBAM_020250__ 250 ATTATTTCCATCGGTAAGGAGTACGGGATTTCAGCCATTTACGGAAGCAT 299
BSNT_03288___ 300 TATCGCTTCAGGCATTCTTGTCATTCTTATTTCATTTTTCTTTGGAAAGC 349
|.|.||.||.||..|.|||||||||||..|.||.||||||||.||.||||
RBAM_020250__ 300 TTTGGCATCGGGTCTGCTTGTCATTCTGCTGTCGTTTTTCTTCGGCAAGC 349
BSNT_03288___ 350 TCGTATCGTTTTTTCCGCCGGTCGTGACAGGCTCTGTTGTTACGATTATC 399
|||||||.|||||.|||||.|||||.||.||.|||||.||.|||||||||
RBAM_020250__ 350 TCGTATCCTTTTTCCCGCCTGTCGTAACCGGATCTGTCGTGACGATTATC 399
BSNT_03288___ 400 GGTATTACACTGATGCCGGTTGCCATGAATAACATGGCCGGCGGAGAAGG 449
||.||.||..|.||||||||.||.||||||.|.||.||||||||.|||||
RBAM_020250__ 400 GGGATGACCTTAATGCCGGTCGCGATGAATCATATTGCCGGCGGGGAAGG 449
BSNT_03288___ 450 AAGTGCA--GATTTCGGAGATCTCTCCAACCTTGTTCTTGCTTTTACCGT 497
.| ||| ||||||||.||||...|.|||||||..||.|..|||||.||
RBAM_020250__ 450 CA--GCAAGGATTTCGGTGATCCGGCTAACCTTGCCCTCGGATTTACGGT 497
BSNT_03288___ 498 GTTGAGT-ATCATTGTACTTCTGTACCGTTTTACAAAAGGCTTTATCAAG 546
|.| .|| |||||.||.||.||.||.||.|||||||||||.|||.|.||.
RBAM_020250__ 498 GCT-CGTCATCATCGTGCTGCTTTATCGGTTTACAAAAGGATTTTTGAAA 546
BSNT_03288___ 547 TCCGTCTCGATTTTGATCGGTATTTTGATTGGCACCTTCATCGCTTATTT 596
|||.|.||||||||.|||||.|||.|.||.||.||...||||||.|||||
RBAM_020250__ 547 TCCATTTCGATTTTAATCGGCATTGTCATCGGGACGGCCATCGCATATTT 596
BSNT_03288___ 597 TATGGGAAAAGTTCAATTTGATAATGTTTCGGACGCGGCAGTTGTTCAAA 646
||||||||||||.||||||||.|||||..||.|.||.|..|...||||||
RBAM_020250__ 597 TATGGGAAAAGTGCAATTTGACAATGTGGCGAATGCTGACGCAATTCAAA 646
BSNT_03288___ 647 TGATTCAGCCATTTTACTTCGGCGCGCCGTCTTTTCATGCAGCGCCTATC 696
|||||.|.||.|||||||||||..|||||.|.||||||||.||.||.||.
RBAM_020250__ 647 TGATTAAACCGTTTTACTTCGGGACGCCGACATTTCATGCGGCACCGATT 696
BSNT_03288___ 697 ATTACGATGTCCATCGTTGCAATTGTCAGCCTTGTGGAGTCAACTGGTGT 746
||||||||||||||||||||.||||||||||||||.||||||||.||.||
RBAM_020250__ 697 ATTACGATGTCCATCGTTGCCATTGTCAGCCTTGTTGAGTCAACCGGCGT 746
BSNT_03288___ 747 TTACTTTGCTTTAGGTGACCTGACAAACCGCCGTTTGACAGAGAAAGATT 796
.||.||.|||.|.|||||||||||||||||.||..||.|.||....||||
RBAM_020250__ 747 CTATTTCGCTCTCGGTGACCTGACAAACCGGCGCCTGTCTGAACGTGATT 796
BSNT_03288___ 797 TGTCTAAAGGCTATCGAGCTGAAGGACTGGCTGTGCTTC-TGGGAGGTAT 845
|..|.||||||||.||.||.|||||.|||||.|| .||| |..|.||.||
RBAM_020250__ 797 TAGCAAAAGGCTACCGCGCGGAAGGCCTGGCGGT-ATTCATCAGCGGCAT 845
BSNT_03288___ 846 TTTTAACGCTTTTCCTTACACGGCATTCTCTCAAAATGTCGGGCTTGTTC 895
||||||.||||||||.||||||||.|..||.|||||.|||||.||.||.|
RBAM_020250__ 846 TTTTAATGCTTTTCCGTACACGGCTTATTCCCAAAACGTCGGCCTCGTGC 895
BSNT_03288___ 896 AGCTCACAGGGATCAAAAAAAATACAGTCATTGTGGTCACAGGTGTGATC 945
||||.|||||.||.||.|||||..|.||.||.|..|||||.||.|...|.
RBAM_020250__ 896 AGCTGACAGGAATTAAGAAAAACGCGGTTATCGGTGTCACGGGCGCACTT 945
BSNT_03288___ 946 CTAATGGCATTTGGGCTGTTTCCAAAGATCGCTGCTTTCACGACCATTAT 995
.|||||...||.||.||.|||||.||.|||||.||.|||||||||||.||
RBAM_020250__ 946 TTAATGCTCTTCGGCCTTTTTCCGAAAATCGCAGCCTTCACGACCATCAT 995
BSNT_03288___ 996 TCCATCCGCTGTTTTGGGCGGTGCAATGGTGGCGATGTTTGGAATGGTGA 1045
.||.||..|.||..||||.||.||.||||||||.|||||.||.|||||.|
RBAM_020250__ 996 CCCGTCTTCCGTACTGGGAGGCGCGATGGTGGCCATGTTCGGCATGGTCA 1045
BSNT_03288___ 1046 TTGCTTACGGAATTAAAATGCTCAGCCGCATTGATTTTGCGAAACAGGAA 1095
|..|.|||||.||||||||||||||.|..|||||.|||...||.||||||
RBAM_020250__ 1046 TCTCCTACGGCATTAAAATGCTCAGTCAAATTGACTTTAAAAAGCAGGAA 1095
BSNT_03288___ 1096 AATCTGCTGATTGTTGCCTGCTCAGTGGGATTGGGGCTGGGTGTGACCGT 1145
||.||.||||||||.||.||.||.||.||||||||.||.|||||.|||||
RBAM_020250__ 1096 AACCTTCTGATTGTCGCGTGTTCGGTCGGATTGGGACTCGGTGTAACCGT 1145
BSNT_03288___ 1146 TGTGCCGGATATTTTCAAACAGCTTCCGAGTGCCTTAACGCTGCTTACAA 1195
.||.||.|||||.||.||.||.||.|||..|..|||||..|||||.||.|
RBAM_020250__ 1146 CGTTCCCGATATGTTTAAGCACCTGCCGTCTTACTTAAATCTGCTGACCA 1195
BSNT_03288___ 1196 CGAATGGCATTGTGGCGGGCAGCTTTACTGCAGTCGTCTTAAATATTGTA 1245
|.||.||.||.||.||.||.||||||||.||.||..|.||.||.|||.|.
RBAM_020250__ 1196 CAAACGGAATCGTCGCCGGAAGCTTTACCGCCGTGCTTTTGAACATTATT 1245
BSNT_03288___ 1246 TATAACGTTTTTTCTAAAGCTAAAAAATCAGAACAAGAAGCTGACCTCGC 1295
|||||..|..||.|||||.|.||||||.| |||.|.
RBAM_020250__ 1246 TATAATATGATTCCTAAAACGAAAAAAAC---------------CCTTGA 1280
BSNT_03288___ 1296 TG-AACAA------AAAA----CAGCAGTCTAA 1317
|| ||||| ||.| .||
RBAM_020250__ 1281 TGTAACAAGGGTTCAAGAGGGTTAG-------- 1305
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