Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03288 and RBAM_020250

See Amino acid alignment / Visit BSNT_03288 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:27
# Commandline: needle
#    -asequence dna-align/BSNT_03288___pbuX.1.9828.seq
#    -bsequence dna-align/RBAM_020250___pbuX.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03288___pbuX-RBAM_020250___pbuX.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03288___pbuX-RBAM_020250___pbuX.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03288___pbuX
# 2: RBAM_020250___pbuX
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1333
# Identity:     975/1333 (73.1%)
# Similarity:   975/1333 (73.1%)
# Gaps:          44/1333 ( 3.3%)
# Score: 3487.0
# 
#
#=======================================

BSNT_03288___      1 ATGAGAAATGGATTCGGCAAAACGCTGTCTTTAGGGATTCAGCATGTTCT     50
                     ||||.|||.||.|..|.||||||.||.||..|.||.||.|||||.||.||
RBAM_020250__      1 ATGAAAAACGGCTATGCCAAAACACTTTCCCTCGGTATCCAGCACGTGCT     50

BSNT_03288___     51 CGCCATGTATGCCGGCGCCATTGTCGTTCCTCTGATTGTCGGAAAAGCAA    100
                     .||||||||||||||||||.|.||||||||..|.|||||.|||...|||.
RBAM_020250__     51 TGCCATGTATGCCGGCGCCGTCGTCGTTCCCTTAATTGTAGGAGCGGCAT    100

BSNT_03288___    101 TGGGACTGACCGTCGAGCAGCTGACTTACTTAGTATCAATTGATATTTTT    150
                     |||||||||.||..||.||||||||.||..|.|||||||||||.||||||
RBAM_020250__    101 TGGGACTGAACGCAGAACAGCTGACATATCTCGTATCAATTGACATTTTT    150

BSNT_03288___    151 ATGTGCGGTGTGGCTACACTTCTGCAAGTGTGGAGCAACCGATTTTTTGG    200
                     ||||||||.|.||||||.||.||.|||||.|||||.||...||.|||.||
RBAM_020250__    151 ATGTGCGGGGCGGCTACGCTGCTTCAAGTATGGAGGAATAAATGTTTCGG    200

BSNT_03288___    201 GATCGGGCTT-CCGGTAGTGCTTGGATGTACCTTTACAGCTGTATCGCCA    249
                     .||| ||||| ||.||.|||||.||.|||||.||.||.||.|||.||||.
RBAM_020250__    201 CATC-GGCTTGCCCGTTGTGCTCGGCTGTACGTTCACCGCGGTAGCGCCG    249

BSNT_03288___    250 ATGATTGCGATTGGATCTGAATATGGGGTTTCAACAGTTTACGGCAGCAT    299
                     ||.|||.|.||.||....||.||.|||.|||||.|..|||||||.|||||
RBAM_020250__    250 ATTATTTCCATCGGTAAGGAGTACGGGATTTCAGCCATTTACGGAAGCAT    299

BSNT_03288___    300 TATCGCTTCAGGCATTCTTGTCATTCTTATTTCATTTTTCTTTGGAAAGC    349
                     |.|.||.||.||..|.|||||||||||..|.||.||||||||.||.||||
RBAM_020250__    300 TTTGGCATCGGGTCTGCTTGTCATTCTGCTGTCGTTTTTCTTCGGCAAGC    349

BSNT_03288___    350 TCGTATCGTTTTTTCCGCCGGTCGTGACAGGCTCTGTTGTTACGATTATC    399
                     |||||||.|||||.|||||.|||||.||.||.|||||.||.|||||||||
RBAM_020250__    350 TCGTATCCTTTTTCCCGCCTGTCGTAACCGGATCTGTCGTGACGATTATC    399

BSNT_03288___    400 GGTATTACACTGATGCCGGTTGCCATGAATAACATGGCCGGCGGAGAAGG    449
                     ||.||.||..|.||||||||.||.||||||.|.||.||||||||.|||||
RBAM_020250__    400 GGGATGACCTTAATGCCGGTCGCGATGAATCATATTGCCGGCGGGGAAGG    449

BSNT_03288___    450 AAGTGCA--GATTTCGGAGATCTCTCCAACCTTGTTCTTGCTTTTACCGT    497
                     .|  |||  ||||||||.||||...|.|||||||..||.|..|||||.||
RBAM_020250__    450 CA--GCAAGGATTTCGGTGATCCGGCTAACCTTGCCCTCGGATTTACGGT    497

BSNT_03288___    498 GTTGAGT-ATCATTGTACTTCTGTACCGTTTTACAAAAGGCTTTATCAAG    546
                     |.| .|| |||||.||.||.||.||.||.|||||||||||.|||.|.||.
RBAM_020250__    498 GCT-CGTCATCATCGTGCTGCTTTATCGGTTTACAAAAGGATTTTTGAAA    546

BSNT_03288___    547 TCCGTCTCGATTTTGATCGGTATTTTGATTGGCACCTTCATCGCTTATTT    596
                     |||.|.||||||||.|||||.|||.|.||.||.||...||||||.|||||
RBAM_020250__    547 TCCATTTCGATTTTAATCGGCATTGTCATCGGGACGGCCATCGCATATTT    596

BSNT_03288___    597 TATGGGAAAAGTTCAATTTGATAATGTTTCGGACGCGGCAGTTGTTCAAA    646
                     ||||||||||||.||||||||.|||||..||.|.||.|..|...||||||
RBAM_020250__    597 TATGGGAAAAGTGCAATTTGACAATGTGGCGAATGCTGACGCAATTCAAA    646

BSNT_03288___    647 TGATTCAGCCATTTTACTTCGGCGCGCCGTCTTTTCATGCAGCGCCTATC    696
                     |||||.|.||.|||||||||||..|||||.|.||||||||.||.||.||.
RBAM_020250__    647 TGATTAAACCGTTTTACTTCGGGACGCCGACATTTCATGCGGCACCGATT    696

BSNT_03288___    697 ATTACGATGTCCATCGTTGCAATTGTCAGCCTTGTGGAGTCAACTGGTGT    746
                     ||||||||||||||||||||.||||||||||||||.||||||||.||.||
RBAM_020250__    697 ATTACGATGTCCATCGTTGCCATTGTCAGCCTTGTTGAGTCAACCGGCGT    746

BSNT_03288___    747 TTACTTTGCTTTAGGTGACCTGACAAACCGCCGTTTGACAGAGAAAGATT    796
                     .||.||.|||.|.|||||||||||||||||.||..||.|.||....||||
RBAM_020250__    747 CTATTTCGCTCTCGGTGACCTGACAAACCGGCGCCTGTCTGAACGTGATT    796

BSNT_03288___    797 TGTCTAAAGGCTATCGAGCTGAAGGACTGGCTGTGCTTC-TGGGAGGTAT    845
                     |..|.||||||||.||.||.|||||.|||||.|| .||| |..|.||.||
RBAM_020250__    797 TAGCAAAAGGCTACCGCGCGGAAGGCCTGGCGGT-ATTCATCAGCGGCAT    845

BSNT_03288___    846 TTTTAACGCTTTTCCTTACACGGCATTCTCTCAAAATGTCGGGCTTGTTC    895
                     ||||||.||||||||.||||||||.|..||.|||||.|||||.||.||.|
RBAM_020250__    846 TTTTAATGCTTTTCCGTACACGGCTTATTCCCAAAACGTCGGCCTCGTGC    895

BSNT_03288___    896 AGCTCACAGGGATCAAAAAAAATACAGTCATTGTGGTCACAGGTGTGATC    945
                     ||||.|||||.||.||.|||||..|.||.||.|..|||||.||.|...|.
RBAM_020250__    896 AGCTGACAGGAATTAAGAAAAACGCGGTTATCGGTGTCACGGGCGCACTT    945

BSNT_03288___    946 CTAATGGCATTTGGGCTGTTTCCAAAGATCGCTGCTTTCACGACCATTAT    995
                     .|||||...||.||.||.|||||.||.|||||.||.|||||||||||.||
RBAM_020250__    946 TTAATGCTCTTCGGCCTTTTTCCGAAAATCGCAGCCTTCACGACCATCAT    995

BSNT_03288___    996 TCCATCCGCTGTTTTGGGCGGTGCAATGGTGGCGATGTTTGGAATGGTGA   1045
                     .||.||..|.||..||||.||.||.||||||||.|||||.||.|||||.|
RBAM_020250__    996 CCCGTCTTCCGTACTGGGAGGCGCGATGGTGGCCATGTTCGGCATGGTCA   1045

BSNT_03288___   1046 TTGCTTACGGAATTAAAATGCTCAGCCGCATTGATTTTGCGAAACAGGAA   1095
                     |..|.|||||.||||||||||||||.|..|||||.|||...||.||||||
RBAM_020250__   1046 TCTCCTACGGCATTAAAATGCTCAGTCAAATTGACTTTAAAAAGCAGGAA   1095

BSNT_03288___   1096 AATCTGCTGATTGTTGCCTGCTCAGTGGGATTGGGGCTGGGTGTGACCGT   1145
                     ||.||.||||||||.||.||.||.||.||||||||.||.|||||.|||||
RBAM_020250__   1096 AACCTTCTGATTGTCGCGTGTTCGGTCGGATTGGGACTCGGTGTAACCGT   1145

BSNT_03288___   1146 TGTGCCGGATATTTTCAAACAGCTTCCGAGTGCCTTAACGCTGCTTACAA   1195
                     .||.||.|||||.||.||.||.||.|||..|..|||||..|||||.||.|
RBAM_020250__   1146 CGTTCCCGATATGTTTAAGCACCTGCCGTCTTACTTAAATCTGCTGACCA   1195

BSNT_03288___   1196 CGAATGGCATTGTGGCGGGCAGCTTTACTGCAGTCGTCTTAAATATTGTA   1245
                     |.||.||.||.||.||.||.||||||||.||.||..|.||.||.|||.|.
RBAM_020250__   1196 CAAACGGAATCGTCGCCGGAAGCTTTACCGCCGTGCTTTTGAACATTATT   1245

BSNT_03288___   1246 TATAACGTTTTTTCTAAAGCTAAAAAATCAGAACAAGAAGCTGACCTCGC   1295
                     |||||..|..||.|||||.|.||||||.|               |||.|.
RBAM_020250__   1246 TATAATATGATTCCTAAAACGAAAAAAAC---------------CCTTGA   1280

BSNT_03288___   1296 TG-AACAA------AAAA----CAGCAGTCTAA   1317
                     || |||||      ||.|    .||        
RBAM_020250__   1281 TGTAACAAGGGTTCAAGAGGGTTAG--------   1305


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