Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03885 and RBAM_020240

See Amino acid alignment / Visit BSNT_03885 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:11
# Commandline: needle
#    -asequence dna-align/BSNT_03885___yrdC.1.9828.seq
#    -bsequence dna-align/RBAM_020240___yrdC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03885___yrdC-RBAM_020240___yrdC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03885___yrdC-RBAM_020240___yrdC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03885___yrdC
# 2: RBAM_020240___yrdC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 567
# Identity:     508/567 (89.6%)
# Similarity:   508/567 (89.6%)
# Gaps:           0/567 ( 0.0%)
# Score: 2304.0
# 
#
#=======================================

BSNT_03885___      1 GTGGAAGAAAAGAAAAAAGCTTTAATCATTGTGGATGTACAAAAAGCCTT     50
                     .|||.|||||||||||||||||||||||||||||||||||||||||||||
RBAM_020240__      1 ATGGCAGAAAAGAAAAAAGCTTTAATCATTGTGGATGTACAAAAAGCCTT     50

BSNT_03885___     51 TGATGATAAAAAATGGGGGGAACGGAATAACGTAAAGGCGGAAGAAAACA    100
                     ||||||||||||.|||||.|||||.|||||||||||||||||||||||.|
RBAM_020240__     51 TGATGATAAAAAGTGGGGAGAACGAAATAACGTAAAGGCGGAAGAAAATA    100

BSNT_03885___    101 TTAGTAAAATACTAAAATTATGGAGAGAAAAAGGATGGACAGTCATATAC    150
                     |.||.||||||||.||||||||||||||||||||||||||||||||||||
RBAM_020240__    101 TCAGCAAAATACTGAAATTATGGAGAGAAAAAGGATGGACAGTCATATAC    150

BSNT_03885___    151 ATACAACACACTTCTGATAAACCTCATTCTTTATTCCATCCAAAGAATGA    200
                     ||||||||.|||||||||||||||..|||||||||..|||||||.|||||
RBAM_020240__    151 ATACAACATACTTCTGATAAACCTGGTTCTTTATTTTATCCAAAAAATGA    200

BSNT_03885___    201 AGGGTTTGCGATAAAGGAAATAGTTAAGCCTATGGATGAAGAAGTCATTA    250
                     .|||.||||.|||||||||||.|||||.||||||||..||||||||||||
RBAM_020240__    201 GGGGGTTGCTATAAAGGAAATCGTTAAACCTATGGAAAAAGAAGTCATTA    250

BSNT_03885___    251 TAACCAAGACAGTAAATAGCAGCTTTATTGGTACGAATTTAGAAGAATTC    300
                     |||||||.|.||||||.||||||||||||||.||.|||.|||||||..|.
RBAM_020240__    251 TAACCAAAAAAGTAAACAGCAGCTTTATTGGGACTAATCTAGAAGAGCTT    300

BSNT_03885___    301 TTAAAATTAAATGAAATAACCACTGTAGTCATAACTGGTTTAACCACGCC    350
                     ||||||..||||||.|||||.|||||.||.||.|||||.||.||.|||||
RBAM_020240__    301 TTAAAAGCAAATGATATAACAACTGTCGTAATCACTGGCTTGACTACGCC    350

BSNT_03885___    351 TCACTGTGTATCAACCACCACAAGAATGAGTGGTAATTTAGGGTTTGATA    400
                     .||||||||.|||||.||||||||.|||||.|||||||||||.|||||||
RBAM_020240__    351 GCACTGTGTTTCAACAACCACAAGGATGAGCGGTAATTTAGGATTTGATA    400

BSNT_03885___    401 CATACCTGATTTCAGATGCAACAGCAGCCTTCGGAATGAGAGACCAAAAT    450
                     ||||.|||||||||||||||||||||||||||||||||||||||||||||
RBAM_020240__    401 CATATCTGATTTCAGATGCAACAGCAGCCTTCGGAATGAGAGACCAAAAT    450

BSNT_03885___    451 GATACATATTATGATGCGGCGACTATTCATAATATATCTCTAGCTACATT    500
                     |||||||||||||||||.|.|||||||||.|||||||||||.|||||.||
RBAM_020240__    451 GATACATATTATGATGCAGAGACTATTCACAATATATCTCTGGCTACGTT    500

BSNT_03885___    501 GCATGATGAATTTGCCACAATATTGACAACTGATCAATTAATAAATGATT    550
                     ||||||||||||||||||||||||.||.||||||||||||||.||.||||
RBAM_020240__    501 GCATGATGAATTTGCCACAATATTAACGACTGATCAATTAATCAACGATT    550

BSNT_03885___    551 TTATAAAAACTCACTGA    567
                     ||||||||||..|||||
RBAM_020240__    551 TTATAAAAACAAACTGA    567


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