Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03287 and RBAM_020200

See Amino acid alignment / Visit BSNT_03287 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:27
# Commandline: needle
#    -asequence dna-align/BSNT_03287___bcsA.1.9828.seq
#    -bsequence dna-align/RBAM_020200___bcsA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03287___bcsA-RBAM_020200___bcsA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03287___bcsA-RBAM_020200___bcsA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03287___bcsA
# 2: RBAM_020200___bcsA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1148
# Identity:     776/1148 (67.6%)
# Similarity:   776/1148 (67.6%)
# Gaps:          97/1148 ( 8.4%)
# Score: 2428.0
# 
#
#=======================================

BSNT_03287___      1 ATGGCGTTTATTTTATCCATTGGAACAAGTCTTCCTGCGTATAATGTAAA     50
                     |||||.|.|.|.|||||..|.|||||.||..||||...||||.||||...
RBAM_020200__      1 ATGGCATATGTGTTATCTGTCGGAACCAGCATTCCGAAGTATCATGTCTC     50

BSNT_03287___     51 CCAAGAGAAAGCGGCCGAGTTCGCCCGCTATATGTTTCAGC--ATTCTTT     98
                     .|||||.|..|||||.||.||.||..|....||||||  ||  ||||.||
RBAM_020200__     51 GCAAGAAACGGCGGCGGATTTTGCGAGAGGGATGTTT--GCCGATTCATT     98

BSNT_03287___     99 TAAGGATATTGACCGGCTGTTATCCTCCTTTAAAAACGGGCAAATCCATT    148
                     ||||||||||||||||||||||....|||||.|||||||..||||..|.|
RBAM_020200__     99 TAAGGATATTGACCGGCTGTTAAAAGCCTTTCAAAACGGCGAAATTGAAT    148

BSNT_03287___    149 CGAGACAGTTTGTTAAGCCGATTGAATGGTATAAAGAGGGGCAC--AGCT    196
                     |.||.||||||||...||||||||||||||||||  |..|||||  .|.|
RBAM_020200__    149 CAAGGCAGTTTGTCCGGCCGATTGAATGGTATAA--AACGGCACGGGGTT    196

BSNT_03287___    197 TTGAAGAAAAAAATCAAATATACATAGAAGAAACACTGAAACACA--GCA    244
                     ||..|||||||||.|...|.||.|..||||||||..|.||.||||  ||.
RBAM_020200__    197 TTTCAGAAAAAAACCGGCTGTATACGGAAGAAACCGTCAAGCACAGTGCG    246

BSNT_03287___    245 GA-GCGGCTGTTCGTGAGTGCCTCTCTCATCCGGAATTTTTTCAAGAA--    291
                     || |||||   .|.|||.||..|..|..|.|||||  ||.||.||.||  
RBAM_020200__    247 GATGCGGC---ACTTGATTGTTTAACAAACCCGGA--TTGTTTAACAAAT    291

BSNT_03287___    292 GCCATTCCTTATGAGAAAGTGGAAGCTGTTTTTTTCGTCTCCAGCACAGG    341
                     .||.||||.|||||.|||||.||.||..|.|||||..|.||||||||.||
RBAM_020200__    292 CCCTTTCCATATGAAAAAGTCGATGCGATCTTTTTTATTTCCAGCACCGG    341

BSNT_03287___    342 CCTTTTCACACCGAGTATCGAGGCGCGGCTTATGAATGAACTTCCGTTTT    391
                     .||||..|||||.||.||.||.|||....|.||||||.|.||||||||||
RBAM_020200__    342 GCTTTCGACACCCAGCATTGAAGCGAAAGTGATGAATCAGCTTCCGTTTT    391

BSNT_03287___    392 CTCCATATACGAAGCGGATTCCGATTTGGGGGCTTGGCTGTGCAGGAGGA    441
                     ||.|..|.||.||.|||||.|||||.|||||..|.||.||.||.||.|||
RBAM_020200__    392 CTGCGAAAACAAAACGGATACCGATCTGGGGTTTAGGATGCGCGGGCGGA    441

BSNT_03287___    442 GCCAGCGGACTTGCGCGTGCAG-----CCGAATACTGCAAAGCGTATCCT    486
                     ||...|||.||     ||.|||     .||||||||||...|||||||||
RBAM_020200__    442 GCGGCCGGCCT-----GTCCAGGGCGTACGAATACTGCCGCGCGTATCCT    486

BSNT_03287___    487 ACGGCTTTTGTGCTTGTCATTGCTGCCGAGCTGTGCAGCCTGACATTCCA    536
                     ...||.|..|||||||||||.||.||.||.||.||||||.|.||.||.||
RBAM_020200__    487 GAAGCATACGTGCTTGTCATCGCGGCTGAACTCTGCAGCTTAACGTTTCA    536

BSNT_03287___    537 GCCGGAAGATAAAACAAAAAGCAATCTGATCGGCACCTCGCTTTTTGGTG    586
                     ||||.|.||.||..||||||||||..|.|||||.||.||.||.||||..|
RBAM_020200__    537 GCCGAACGACAAGTCAAAAAGCAACTTAATCGGAACTTCCCTGTTTGCGG    586

BSNT_03287___    587 ACGGCATTGCCGCAGCTTTATTATGCGGAGAGAAGGCGGACCG-CAGGAT    635
                     ||||.||||||||||...||.|..|.|||||.||||||.|||| .|.|||
RBAM_020200__    587 ACGGAATTGCCGCAGTACTAATCGGAGGAGAAAAGGCGAACCGAAACGAT    636

BSNT_03287___    636 GTCAA--AGCTGCAACTTGCGCCGAAGATAATGGACGCCCAATCTGTTTT    683
                     |||||  |||.||..|||   |||..||||.|.|.|.|||||||.||..|
RBAM_020200__    637 GTCAAACAGCCGCTTCTT---CCGCGGATATTCGCCACCCAATCGGTGAT    683

BSNT_03287___    684 GATGAAACAATCAGAAGATGTCATGGGCTGGGACTTTACCGATCA-AGGA    732
                     ||||....|..|.||||||||.|||||||||||.||.||.|| || .||.
RBAM_020200__    684 GATGCCGGATGCGGAAGATGTGATGGGCTGGGAATTCACGGA-CAGCGGT    732

BSNT_03287___    733 TTCAAAGTCATTTTCTCACGAGACATTCCGACCTTGGTGGAAAAATGGCT    782
                     ||..||||||||||.|||.||||.|||||.|||.||||...|.|.|||||
RBAM_020200__    733 TTTCAAGTCATTTTTTCAAGAGATATTCCCACCCTGGTTTCACAGTGGCT    782

BSNT_03287___    783 CAA-AACAAATGTACA-GA---TTTTTTTGGACAAACATAAGCTGTCATT    827
                     .|| .|| |||||..| ||   |||.||||      ||||.|.|.|||.|
RBAM_020200__    783 GAAGGAC-AATGTTGATGAATTTTTATTTG------CATATGGTATCAGT    825

BSNT_03287___    828 C--CATGATATCAGTGTTTTTTTGGCGCATCCAGGCGGAAAAAAAGTGAT    875
                     |  ||.||.||.|.....|||.|.||.|||||||||||.|||||.||.||
RBAM_020200__    826 CCTCACGACATTAAAACCTTTCTTGCCCATCCAGGCGGGAAAAAGGTCAT    875

BSNT_03287___    876 CGATGCATACATCAAAAGTCT------------CGGGCTGTCGTCAGAAA    913
                     .||.||.||..|.|..|||||            |||.|            
RBAM_020200__    876 TGACGCCTATTTAACGAGTCTTTCAATGGACACCGGTC------------    913

BSNT_03287___    914 AGCTT---TCATCTGCGCAAAGCATTTTGCAAAAGCACGGAAATATGTCT    960
                     |||||   .||||| ||.||.|  |..|||||||.|||||.||.||||||
RBAM_020200__    914 AGCTTGCGGCATCT-CGGAAGG--TGCTGCAAAAACACGGGAACATGTCT    960

BSNT_03287___    961 TCAGCTACAATCTTGTATGTGATCAAAGACCATCTGCAGAACGGACATAA   1010
                     ||.||.||.||.||..|||||||.|||||.||..|||...||||||...|
RBAM_020200__    961 TCCGCAACTATTTTTCATGTGATAAAAGAACAGTTGCTCCACGGACGGCA   1010

BSNT_03287___   1011 AAAGGAAGCTGAACG----AGGACTGATTGGCGCATTAGGGCCGGGTTTC   1056
                     .||||||    ||||    |||.|||||.|||||..|.||||||||.||.
RBAM_020200__   1011 GAAGGAA----AACGAAAAAGGGCTGATCGGCGCTCTCGGGCCGGGATTT   1056

BSNT_03287___   1057 TCATCAGA---ATTGCTGTTATTCAGCTGGGAAAAGGGGGC--CTGA-   1098
                     ||.||.||   .||||||   ||||||||||||||||||||  ||.| 
RBAM_020200__   1057 TCGTCTGAGCTTTTGCTG---TTCAGCTGGGAAAAGGGGGCTTCTTAA   1101


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