Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03287 and RBAM_020200
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:27
# Commandline: needle
# -asequence dna-align/BSNT_03287___bcsA.1.9828.seq
# -bsequence dna-align/RBAM_020200___bcsA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03287___bcsA-RBAM_020200___bcsA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03287___bcsA-RBAM_020200___bcsA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03287___bcsA
# 2: RBAM_020200___bcsA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1148
# Identity: 776/1148 (67.6%)
# Similarity: 776/1148 (67.6%)
# Gaps: 97/1148 ( 8.4%)
# Score: 2428.0
#
#
#=======================================
BSNT_03287___ 1 ATGGCGTTTATTTTATCCATTGGAACAAGTCTTCCTGCGTATAATGTAAA 50
|||||.|.|.|.|||||..|.|||||.||..||||...||||.||||...
RBAM_020200__ 1 ATGGCATATGTGTTATCTGTCGGAACCAGCATTCCGAAGTATCATGTCTC 50
BSNT_03287___ 51 CCAAGAGAAAGCGGCCGAGTTCGCCCGCTATATGTTTCAGC--ATTCTTT 98
.|||||.|..|||||.||.||.||..|....|||||| || ||||.||
RBAM_020200__ 51 GCAAGAAACGGCGGCGGATTTTGCGAGAGGGATGTTT--GCCGATTCATT 98
BSNT_03287___ 99 TAAGGATATTGACCGGCTGTTATCCTCCTTTAAAAACGGGCAAATCCATT 148
||||||||||||||||||||||....|||||.|||||||..||||..|.|
RBAM_020200__ 99 TAAGGATATTGACCGGCTGTTAAAAGCCTTTCAAAACGGCGAAATTGAAT 148
BSNT_03287___ 149 CGAGACAGTTTGTTAAGCCGATTGAATGGTATAAAGAGGGGCAC--AGCT 196
|.||.||||||||...|||||||||||||||||| |..||||| .|.|
RBAM_020200__ 149 CAAGGCAGTTTGTCCGGCCGATTGAATGGTATAA--AACGGCACGGGGTT 196
BSNT_03287___ 197 TTGAAGAAAAAAATCAAATATACATAGAAGAAACACTGAAACACA--GCA 244
||..|||||||||.|...|.||.|..||||||||..|.||.|||| ||.
RBAM_020200__ 197 TTTCAGAAAAAAACCGGCTGTATACGGAAGAAACCGTCAAGCACAGTGCG 246
BSNT_03287___ 245 GA-GCGGCTGTTCGTGAGTGCCTCTCTCATCCGGAATTTTTTCAAGAA-- 291
|| ||||| .|.|||.||..|..|..|.||||| ||.||.||.||
RBAM_020200__ 247 GATGCGGC---ACTTGATTGTTTAACAAACCCGGA--TTGTTTAACAAAT 291
BSNT_03287___ 292 GCCATTCCTTATGAGAAAGTGGAAGCTGTTTTTTTCGTCTCCAGCACAGG 341
.||.||||.|||||.|||||.||.||..|.|||||..|.||||||||.||
RBAM_020200__ 292 CCCTTTCCATATGAAAAAGTCGATGCGATCTTTTTTATTTCCAGCACCGG 341
BSNT_03287___ 342 CCTTTTCACACCGAGTATCGAGGCGCGGCTTATGAATGAACTTCCGTTTT 391
.||||..|||||.||.||.||.|||....|.||||||.|.||||||||||
RBAM_020200__ 342 GCTTTCGACACCCAGCATTGAAGCGAAAGTGATGAATCAGCTTCCGTTTT 391
BSNT_03287___ 392 CTCCATATACGAAGCGGATTCCGATTTGGGGGCTTGGCTGTGCAGGAGGA 441
||.|..|.||.||.|||||.|||||.|||||..|.||.||.||.||.|||
RBAM_020200__ 392 CTGCGAAAACAAAACGGATACCGATCTGGGGTTTAGGATGCGCGGGCGGA 441
BSNT_03287___ 442 GCCAGCGGACTTGCGCGTGCAG-----CCGAATACTGCAAAGCGTATCCT 486
||...|||.|| ||.||| .||||||||||...|||||||||
RBAM_020200__ 442 GCGGCCGGCCT-----GTCCAGGGCGTACGAATACTGCCGCGCGTATCCT 486
BSNT_03287___ 487 ACGGCTTTTGTGCTTGTCATTGCTGCCGAGCTGTGCAGCCTGACATTCCA 536
...||.|..|||||||||||.||.||.||.||.||||||.|.||.||.||
RBAM_020200__ 487 GAAGCATACGTGCTTGTCATCGCGGCTGAACTCTGCAGCTTAACGTTTCA 536
BSNT_03287___ 537 GCCGGAAGATAAAACAAAAAGCAATCTGATCGGCACCTCGCTTTTTGGTG 586
||||.|.||.||..||||||||||..|.|||||.||.||.||.||||..|
RBAM_020200__ 537 GCCGAACGACAAGTCAAAAAGCAACTTAATCGGAACTTCCCTGTTTGCGG 586
BSNT_03287___ 587 ACGGCATTGCCGCAGCTTTATTATGCGGAGAGAAGGCGGACCG-CAGGAT 635
||||.||||||||||...||.|..|.|||||.||||||.|||| .|.|||
RBAM_020200__ 587 ACGGAATTGCCGCAGTACTAATCGGAGGAGAAAAGGCGAACCGAAACGAT 636
BSNT_03287___ 636 GTCAA--AGCTGCAACTTGCGCCGAAGATAATGGACGCCCAATCTGTTTT 683
||||| |||.||..||| |||..||||.|.|.|.|||||||.||..|
RBAM_020200__ 637 GTCAAACAGCCGCTTCTT---CCGCGGATATTCGCCACCCAATCGGTGAT 683
BSNT_03287___ 684 GATGAAACAATCAGAAGATGTCATGGGCTGGGACTTTACCGATCA-AGGA 732
||||....|..|.||||||||.|||||||||||.||.||.|| || .||.
RBAM_020200__ 684 GATGCCGGATGCGGAAGATGTGATGGGCTGGGAATTCACGGA-CAGCGGT 732
BSNT_03287___ 733 TTCAAAGTCATTTTCTCACGAGACATTCCGACCTTGGTGGAAAAATGGCT 782
||..||||||||||.|||.||||.|||||.|||.||||...|.|.|||||
RBAM_020200__ 733 TTTCAAGTCATTTTTTCAAGAGATATTCCCACCCTGGTTTCACAGTGGCT 782
BSNT_03287___ 783 CAA-AACAAATGTACA-GA---TTTTTTTGGACAAACATAAGCTGTCATT 827
.|| .|| |||||..| || |||.|||| ||||.|.|.|||.|
RBAM_020200__ 783 GAAGGAC-AATGTTGATGAATTTTTATTTG------CATATGGTATCAGT 825
BSNT_03287___ 828 C--CATGATATCAGTGTTTTTTTGGCGCATCCAGGCGGAAAAAAAGTGAT 875
| ||.||.||.|.....|||.|.||.|||||||||||.|||||.||.||
RBAM_020200__ 826 CCTCACGACATTAAAACCTTTCTTGCCCATCCAGGCGGGAAAAAGGTCAT 875
BSNT_03287___ 876 CGATGCATACATCAAAAGTCT------------CGGGCTGTCGTCAGAAA 913
.||.||.||..|.|..||||| |||.|
RBAM_020200__ 876 TGACGCCTATTTAACGAGTCTTTCAATGGACACCGGTC------------ 913
BSNT_03287___ 914 AGCTT---TCATCTGCGCAAAGCATTTTGCAAAAGCACGGAAATATGTCT 960
||||| .||||| ||.||.| |..|||||||.|||||.||.||||||
RBAM_020200__ 914 AGCTTGCGGCATCT-CGGAAGG--TGCTGCAAAAACACGGGAACATGTCT 960
BSNT_03287___ 961 TCAGCTACAATCTTGTATGTGATCAAAGACCATCTGCAGAACGGACATAA 1010
||.||.||.||.||..|||||||.|||||.||..|||...||||||...|
RBAM_020200__ 961 TCCGCAACTATTTTTCATGTGATAAAAGAACAGTTGCTCCACGGACGGCA 1010
BSNT_03287___ 1011 AAAGGAAGCTGAACG----AGGACTGATTGGCGCATTAGGGCCGGGTTTC 1056
.|||||| |||| |||.|||||.|||||..|.||||||||.||.
RBAM_020200__ 1011 GAAGGAA----AACGAAAAAGGGCTGATCGGCGCTCTCGGGCCGGGATTT 1056
BSNT_03287___ 1057 TCATCAGA---ATTGCTGTTATTCAGCTGGGAAAAGGGGGC--CTGA- 1098
||.||.|| .|||||| |||||||||||||||||||| ||.|
RBAM_020200__ 1057 TCGTCTGAGCTTTTGCTG---TTCAGCTGGGAAAAGGGGGCTTCTTAA 1101
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