Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03286 and RBAM_020190

See Amino acid alignment / Visit BSNT_03286 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:27
# Commandline: needle
#    -asequence dna-align/BSNT_03286___ypbQ.1.9828.seq
#    -bsequence dna-align/RBAM_020190___ypbQ.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03286___ypbQ-RBAM_020190___ypbQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03286___ypbQ-RBAM_020190___ypbQ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03286___ypbQ
# 2: RBAM_020190___ypbQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 533
# Identity:     355/533 (66.6%)
# Similarity:   355/533 (66.6%)
# Gaps:          52/533 ( 9.8%)
# Score: 1055.0
# 
#
#=======================================

BSNT_03286___      1 ATGTTTTGGTTGTTGATCGCCATTCTCATTG-TTCAAAGAGCA--GCAGA     47
                     |||||||||.||||.||   |||.||..||| ..|..||.|.|  ||.||
RBAM_020190__      1 ATGTTTTGGCTGTTTAT---CATGCTGCTTGCGGCCCAGCGGATTGCGGA     47

BSNT_03286___     48 AATGGCAGTGGCCAGGCAAAACGAACAAAAGGTAAAGAAGCAAGGAGCAA     97
                     .|||...||||||.|||..||.||.||||||||.||.||||||||.|||.
RBAM_020190__     48 GATGATCGTGGCCCGGCGCAATGAGCAAAAGGTGAAAAAGCAAGGCGCAG     97

BSNT_03286___     98 TTGAATTTGGCGAGAGCCACTATCCGTATATCATTACGATGCATATCCTT    147
                     |.||||..||.||..|.||.|||||.|.|.||.|...||||||..|.||.
RBAM_020190__     98 TCGAATACGGAGAAGGACATTATCCCTTTCTCGTCCTGATGCACGTGCTC    147

BSNT_03286___    148 TTTTTCCTGTC---CTTA-ATTGCCGAGGT-GCTGCTGATGAATAAACAG    192
                     |||||  ||||   |||| |  ||.||||| ||.||...|.||.|||| |
RBAM_020190__    148 TTTTT--TGTCTCTCTTACA--GCTGAGGTGGCGGCGTTTCAAAAAAC-G    192

BSNT_03286___    193 C---CGTCCAGCTGGTGGCTCG---------GTATCGCTGCAGTTATTTT    230
                     |   | ||||  .|||||..||         |||         |||||||
RBAM_020190__    193 CTTTC-TCCA--AGGTGGGCCGCCATTATATGTA---------TTATTTT    230

BSNT_03286___    231 AAGCGCACA---GATCGTACGGTATTGGGCGCTTTGTTCCTTAGGGGCAT    277
                     |...|.|||   ||||   .|||||||||||||.|..||.||||||...|
RBAM_020190__    231 ATTTGTACAGGGGATC---AGGTATTGGGCGCTATTATCATTAGGGCGGT    277

BSNT_03286___    278 ATTGGAATACGAAAATCCTTGTTGTTCCAGGTGTAGAGCTTGTAAAAAAA    327
                     ||||||||||||||||.|||||.||.||.|.||..||||||||.|.|||.
RBAM_020190__    278 ATTGGAATACGAAAATTCTTGTCGTGCCGGATGCGGAGCTTGTCAGAAAG    327

BSNT_03286___    328 GGTCCATATAAATGGATGAAACATCCAAACTATGCCGTTGTTATACTCGA    377
                     ||.||.||.|..||||||||.||.||.|||||.||.||.||.||..|.||
RBAM_020190__    328 GGGCCGTACAGGTGGATGAAGCACCCGAACTACGCGGTCGTCATCTTAGA    377

BSNT_03286___    378 AATTTTGTTGATTCCGCTGCTTTATCAAGC--ATACGTCACCATGTGTCT    425
                     |.||.|.||..|.||||||.|.||...|||  ||..|.|||  |||.|||
RBAM_020190__    378 ATTTATTTTTCTGCCGCTGTTATACGGAGCGTATTGGACAC--TGTTTCT    425

BSNT_03286___    426 GTTTTCCATTTTCAATGCAGTG-TTGTTAAGCGTCAGAATTCGCGCAGAA    474
                     .|||||.|||.||||||| .|| .||.|.|..||.||.||||||||.|||
RBAM_020190__    426 CTTTTCGATTCTCAATGC-CTGCATGCTCACTGTGAGGATTCGCGCCGAA    474

BSNT_03286___    475 GACAAAGCATTACAGGAATACAGCGTAAAATAG    507
                     ||.|||||..||.|.|||.|||.||.|||||||
RBAM_020190__    475 GAGAAAGCGCTAGAAGAAAACACCGCAAAATAG    507


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