Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03272 and RBAM_020090

See Amino acid alignment / Visit BSNT_03272 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:25
# Commandline: needle
#    -asequence dna-align/BSNT_03272___ypzA.1.9828.seq
#    -bsequence dna-align/RBAM_020090___ypzA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03272___ypzA-RBAM_020090___ypzA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03272___ypzA-RBAM_020090___ypzA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03272___ypzA
# 2: RBAM_020090___ypzA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 285
# Identity:     198/285 (69.5%)
# Similarity:   198/285 (69.5%)
# Gaps:          42/285 (14.7%)
# Score: 675.5
# 
#
#=======================================

BSNT_03272___      1 -GTGACTTCAGAATTT----CATAATGAGGATCAGACTGGCTTTACGGAT     45
                      ..||| ||.||||||    ||        |.|.|||||     ||||||
RBAM_020090__      1 ATGGAC-TCTGAATTTTTTCCA--------AACGGACTG-----ACGGAT     36

BSNT_03272___     46 AAGCGGCAGCTGGAACTAGCGGTGGAAACAGCGCAGAAAACAACAGGAGC     95
                     ||.||.|||||.|||.||||.|||||||||||.|||||||||||.|||||
RBAM_020090__     37 AAACGCCAGCTTGAATTAGCAGTGGAAACAGCCCAGAAAACAACGGGAGC     86

BSNT_03272___     96 CGCGACGAGAGGCCAAAGCAAAACATTAGTTGACTCTGCATACCAAGCCA    145
                     .||.||..||.||||||....|||.||.||.||.|||||||||||.||.|
RBAM_020090__     87 GGCTACCCGAAGCCAAAATTCAACTTTGGTGGAATCTGCATACCAGGCGA    136

BSNT_03272___    146 TTGAGGATGCTAGAGAAC--TGTCACAATC---TGAAGAGCTGGCAGCTC    190
                     ||.|||||||  .|||||  ||||||||||   ||||   |||..|||||
RBAM_020090__    137 TTCAGGATGC--CAGAACGATGTCACAATCCAGTGAA---CTGCAAGCTC    181

BSNT_03272___    191 TCGATGATCCTGAATTTGT-----AAAGCAGCAACAGCAACTGCTAGATG    235
                     ||||    ||.|.|||| |     ||||||||.|..|   ||.||.||.|
RBAM_020090__    182 TCGA----CCAGGATTT-TCTGCAAAAGCAGCGAATG---CTTCTCGACG    223

BSNT_03272___    236 ACAGCGAGCATCAGCTGGATGAATTCAAAGAATAA    270
                     |..||.||||||||||.|||||||||.||.|||||
RBAM_020090__    224 ATTGCCAGCATCAGCTTGATGAATTCGAAAAATAA    258


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