Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03258 and RBAM_020010
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:22
# Commandline: needle
# -asequence dna-align/BSNT_03258___ilvD.1.9828.seq
# -bsequence dna-align/RBAM_020010___ilvD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03258___ilvD-RBAM_020010___ilvD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03258___ilvD-RBAM_020010___ilvD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03258___ilvD
# 2: RBAM_020010___ilvD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1685
# Identity: 1380/1685 (81.9%)
# Similarity: 1380/1685 (81.9%)
# Gaps: 16/1685 ( 0.9%)
# Score: 5660.0
#
#
#=======================================
BSNT_03258___ 1 ATGGCAGAATTACGCAGTAATATGATCACACAAGGAATCGATAGAGCTCC 50
|||||||||||||||||.||.|||||||||||.|||||.||.|||||.||
RBAM_020010__ 1 ATGGCAGAATTACGCAGCAACATGATCACACAGGGAATTGACAGAGCGCC 50
BSNT_03258___ 51 GCACCGCAGTTTGCTTCGTGCAGCAGGAGTAAAAGAAGAGGATTTCGGCA 100
|||||||||..|.|||||.||.||.||.|||||||||||.||.|||||||
RBAM_020010__ 51 GCACCGCAGCCTTCTTCGCGCTGCCGGCGTAAAAGAAGAAGACTTCGGCA 100
BSNT_03258___ 101 AGCCGTTTATTGCGGTGTGTAATTCATACATTGATATCGTTCCCGGTCAT 150
||||||||||.|||||.||||||||||||||.||||||||||||||.|||
RBAM_020010__ 101 AGCCGTTTATCGCGGTCTGTAATTCATACATCGATATCGTTCCCGGGCAT 150
BSNT_03258___ 151 GTTCACTTGCAGGAGTTTGGGAAAATCGTAAAAGAAGCAATCAGAGAAGC 200
||||||.|||||||.|||||.|||||||||||||||||||||||.|||||
RBAM_020010__ 151 GTTCACCTGCAGGAATTTGGAAAAATCGTAAAAGAAGCAATCAGGGAAGC 200
BSNT_03258___ 201 AGGGGGCGTTCCGTTTGAATTTAATACCATTGGGGTAGATGATGGTATCG 250
.||.||.||.||.|||||||||||.||.||.||.||||||||.||.||||
RBAM_020010__ 201 GGGCGGTGTGCCTTTTGAATTTAACACGATCGGAGTAGATGACGGAATCG 250
BSNT_03258___ 251 CAATGGGGCATATCGGTATGAGATATTCGCTGCCAAGCCGTGAAATTATC 300
|.||||||||||||||.|||||||||||||||||.|||||.|||||.||.
RBAM_020010__ 251 CGATGGGGCATATCGGCATGAGATATTCGCTGCCGAGCCGCGAAATCATT 300
BSNT_03258___ 301 GCAGACTCTGTGGAAACGGTTGTATCCGCACATTGGTTTGACGGAATGGT 350
||.||.||.||.||||||||.||.||.||.||.|||||||||||||||||
RBAM_020010__ 301 GCCGATTCAGTTGAAACGGTCGTCTCGGCGCACTGGTTTGACGGAATGGT 350
BSNT_03258___ 351 CTGTATTCCGAACTGCGACAAAATCACACCGGGAATGCTTATGGCGGCAA 400
|||.||||||||||||||||||||.||.|||||||||||.||||||||.|
RBAM_020010__ 351 CTGCATTCCGAACTGCGACAAAATTACGCCGGGAATGCTGATGGCGGCTA 400
BSNT_03258___ 401 TGCGCATCAACATTCCGACGATTTTTGTCAGCGGCGGACCGATGGCGGCA 450
||||.||.||.||||||||.||||||||||||||.||.||||||||.||.
RBAM_020010__ 401 TGCGGATTAATATTCCGACCATTTTTGTCAGCGGGGGGCCGATGGCAGCC 450
BSNT_03258___ 451 GGAAGAACAAGTGACGGGCGAAAAATCTCCCTTTCCTCAGTATTCGAAGG 500
||..|.|||||.|||||.||.|||||.||.|||||.||||||||.|||||
RBAM_020010__ 451 GGCCGTACAAGCGACGGCCGCAAAATTTCGCTTTCTTCAGTATTTGAAGG 500
BSNT_03258___ 501 GGTAGGCGCCTACCAAGCAGGGAAAATCAACGAAAACGAGCTTCAAGAAC 550
.||.|||||.||.|||||.|||||||||...||||.|||.||.||.||.|
RBAM_020010__ 501 CGTCGGCGCATATCAAGCCGGGAAAATCGGTGAAAGCGACCTGCAGGAGC 550
BSNT_03258___ 551 TAGAGCAGTTCGGATGCCCAACGTGCGGGTCTTGCTCAGGCATGTTTACG 600
|.||.||||||||.|||||.||||||||.|||||.||.||||||||||||
RBAM_020010__ 551 TGGAACAGTTCGGCTGCCCGACGTGCGGATCTTGTTCGGGCATGTTTACG 600
BSNT_03258___ 601 GCGAACTCAATGAACTGTCTGTCAGAAGCACTTGGTCTTGC-CTTGCCGG 649
||.|||||.||||||||||||||.|||||.||.|||||.|| ||| ||||
RBAM_020010__ 601 GCAAACTCCATGAACTGTCTGTCTGAAGCGCTCGGTCTGGCGCTT-CCGG 649
BSNT_03258___ 650 GTAATGGAACCATTCTGGCGACATCTCCGGAACGCAAAGAGTTTGTGAGA 699
|.||.|||||.|||||.||.||.||.||||||.|.|.|||||||||||||
RBAM_020010__ 650 GCAACGGAACAATTCTTGCAACTTCACCGGAAAGAAGAGAGTTTGTGAGA 699
BSNT_03258___ 700 AAATCGGCTGCGCAATTAATGGAAACGATTCGCAAAGATATCAAACCGCG 749
|||||.||.||.|||||.|||||.||.||....|||||.||.||.|||||
RBAM_020010__ 700 AAATCAGCGGCCCAATTGATGGAGACCATCAAAAAAGACATTAAGCCGCG 749
BSNT_03258___ 750 TGATATCGTTACAGTAAAAGCGATTGATAACGCGTTTGCACTCGATATGG 799
.||||||||.||.|.||||||||||||.|||||.|||||..|.||.||||
RBAM_020010__ 750 CGATATCGTCACCGAAAAAGCGATTGACAACGCATTTGCGTTAGACATGG 799
BSNT_03258___ 800 CGCTCGGAGGTTCTACAAATACCGTTCTTCATACGCTTGCCCTTGCAAAC 849
|.|||||.||.||.||.||.||.||.||.|||||||||||.|||||.||.
RBAM_020010__ 800 CTCTCGGCGGCTCAACCAACACAGTGCTACATACGCTTGCGCTTGCCAAT 849
BSNT_03258___ 850 GAAGCCGGCGTTGAATACTCTTTAGAACGCATTAACGAAGTCGCTGAGCG 899
|||||.||.|||||.||||||||||||||||||||||||||.|||||.||
RBAM_020010__ 850 GAAGCTGGGGTTGAGTACTCTTTAGAACGCATTAACGAAGTGGCTGAACG 899
BSNT_03258___ 900 CGTGCCGCACTTGGCCAAGCTGGCGCCTGCATCGGATGTGTTTATTGAAG 949
.|||||.|||||..|.||..|||||||.||.|||||.||.||.|||||||
RBAM_020010__ 900 AGTGCCTCACTTATCGAAATTGGCGCCGGCCTCGGACGTCTTCATTGAAG 949
BSNT_03258___ 950 ATCTTCATGAAGCGGGCGGCGTGTCAGCGGCTCTGAATGAGCTTTCCAAG 999
||||.||.|||||||||||.||.||.|||||.||.|||||..|..|.||.
RBAM_020010__ 950 ATCTGCACGAAGCGGGCGGAGTCTCGGCGGCCCTTAATGAATTAGCGAAA 999
BSNT_03258___ 1000 AAAGAAGGAGCGCTTCATTTAGATGCGCTGACTGTTACAGGAAAAACTCT 1049
||||||||.|||||||||.|.||.|||||||||||.|||||....||.||
RBAM_020010__ 1000 AAAGAAGGGGCGCTTCATCTTGACGCGCTGACTGTAACAGGCCGCACACT 1049
BSNT_03258___ 1050 TGGAGAAACCATTGCCGGACATGAAGTAAAGGATTATGACGTCATTCATC 1099
.||||||||.|||||.||.|||||||||||||||||||||||.|||||||
RBAM_020010__ 1050 CGGAGAAACAATTGCGGGTCATGAAGTAAAGGATTATGACGTGATTCATC 1099
BSNT_03258___ 1100 CGCTGGATCAA-CCATTCACTGAAAAGGG-----TGGCCTTGCTGTTTTA 1143
||||.|| ||| ||.||.||.|||||.|| |||||.|.||||||
RBAM_020010__ 1100 CGCTTGA-CAATCCGTTTACCGAAAAAGGCGGTTTGGCCGTCCTGTTT-- 1146
BSNT_03258___ 1144 TTCGGTAATCTAGCTCCGGACGGCGCTATCATTAAAACAGGCGGCGTACA 1193
||.|||||.||||||||||||||.||.||.||||||||||||||.||
RBAM_020010__ 1147 ---GGGAATCTGGCTCCGGACGGCGCCATTATCAAAACAGGCGGCGTGCA 1193
BSNT_03258___ 1194 GAATGGGATTACAAGACACGAAGGGCCGGCTGTCGTATTCGATTCTCAGG 1243
|.|.||||||||||||||.|||||.||.||||||||.||.|||||.||||
RBAM_020010__ 1194 GGACGGGATTACAAGACATGAAGGTCCCGCTGTCGTCTTTGATTCCCAGG 1243
BSNT_03258___ 1244 ACGAGGCGCTTGACGGCATTATCAACCGAAAAGTAAAAGAAGGCGACGTT 1293
|.|..||||||||.||||||||.|||||.||||||||||||||.||.|||
RBAM_020010__ 1244 ATGCCGCGCTTGAAGGCATTATAAACCGCAAAGTAAAAGAAGGAGATGTT 1293
BSNT_03258___ 1294 GTTATCATCAGATATGAAGGGCCAAAAGGCGGACCTGGCATGCCGGAAAT 1343
||.||.|||.|.||||||||||||||.|||||.||.|||||||||||.||
RBAM_020010__ 1294 GTCATTATCCGTTATGAAGGGCCAAAGGGCGGCCCGGGCATGCCGGAGAT 1343
BSNT_03258___ 1344 GCTGGCGCCAACATCCCAAATCGTTGGAATGGGACTCGGACCAAAAGTGG 1393
|||.||.||.||.||.||.||.||.||||||||.||.||.||.|||||||
RBAM_020010__ 1344 GCTCGCTCCGACGTCTCAGATTGTCGGAATGGGGCTTGGCCCGAAAGTGG 1393
BSNT_03258___ 1394 CATTGATTACGGACGGACGTTTTTCCGGAGCCTCCCGTGGCCTCTCAATC 1443
|..|.|||||.|||||.||||||||.|||||.|||||.|||||.||||||
RBAM_020010__ 1394 CGCTTATTACAGACGGCCGTTTTTCAGGAGCGTCCCGGGGCCTTTCAATC 1443
BSNT_03258___ 1444 GGCCACGTATCACCTGAGGCAGCTGAGGGCGGGCCGCTTGCCTTTGTTGA 1493
||.||||||||.|||||.||.|||||.|||||.|||||.||.||.||.||
RBAM_020010__ 1444 GGGCACGTATCGCCTGAAGCGGCTGAAGGCGGCCCGCTCGCATTCGTAGA 1493
BSNT_03258___ 1494 AAACGGAGACCATATTATCGTTGATATTGAAAAACGTATCTTGGATGTAC 1543
||||||.||||||.|.||||||||.||.||||||||.||.|||||.||||
RBAM_020010__ 1494 AAACGGCGACCATGTCATCGTTGACATAGAAAAACGGATTTTGGACGTAC 1543
BSNT_03258___ 1544 AAGTGCCAGAAGAAGAGTGGGAAAAACGAAAAG-CGAACTGGAAAGGTTT 1592
|||||||.||||||||.|||||||||||.||.| |||| ||||||||.||
RBAM_020010__ 1544 AAGTGCCTGAAGAAGAATGGGAAAAACGCAAGGCCGAA-TGGAAAGGCTT 1592
BSNT_03258___ 1593 TGAACCGAAAGTGAAAACCGGCTACCTGGCACGTTATTCTAAACTTGTGA 1642
.||.||||||||.|||||.||.||.||.||.||.|||||.|||||.||.|
RBAM_020010__ 1593 CGAGCCGAAAGTAAAAACAGGATATCTAGCCCGGTATTCCAAACTCGTAA 1642
BSNT_03258___ 1643 CGAGTGCCAACACCGGCGGTATTATGAAAATCTAG 1677
|.||.|||||.||.|||||.||.||||||||.||.
RBAM_020010__ 1643 CAAGCGCCAATACGGGCGGAATCATGAAAATATAA 1677
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