Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03256 and RBAM_019990

See Amino acid alignment / Visit BSNT_03256 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:22
# Commandline: needle
#    -asequence dna-align/BSNT_03256.1.9828.seq
#    -bsequence dna-align/RBAM_019990___ypiP.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03256-RBAM_019990___ypiP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03256-RBAM_019990___ypiP.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03256
# 2: RBAM_019990___ypiP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 803
# Identity:     535/803 (66.6%)
# Similarity:   535/803 (66.6%)
# Gaps:          61/803 ( 7.6%)
# Score: 1655.0
# 
#
#=======================================

BSNT_03256         1 ATGATAACAACAAGCTATAGACCGTCTGAACACACCATAAAAACTGCAAA     50
                     |||||.|||||.||.||..||||....|||.|.||.|||.|.||.||   
RBAM_019990__      1 ATGATCACAACGAGTTACCGACCAAGCGAATATACGATACACACAGC---     47

BSNT_03256        51 GCAGCTTTCTAAAGAGCTAAAT---ATGC---------CATACTGCGGAC     88
                     ||||   ||      |||.|.|   |.||         |.||||||.|.|
RBAM_019990__     48 GCAG---TC------GCTCAGTGTCAAGCTGGGTGACACTTACTGCAGCC     88

BSNT_03256        89 GGAATAAACAAACGGTTGAACACCTGTTGAAGTCAGCTGAACGTGATTTG    138
                     |.||||||||..|..|||||.|..||.||.|...|||.|...|.|||.|.
RBAM_019990__     89 GCAATAAACAGCCCATTGAAAAAATGCTGGAACGAGCGGCTAGCGATCTT    138

BSNT_03256       139 CTAGTGGTCGGCAAAGAGCGGTTTGAGCTGTATACGAAACAAGGTGCCAA    188
                     .||||..||||.||.||.|||||.||.||.||.|||||.|||||.|..||
RBAM_019990__    139 TTAGTCATCGGAAAGGAACGGTTCGAACTTTACACGAAGCAAGGGGAGAA    188

BSNT_03256       189 ATTCTTTTTTCATCCAAATACAGCGATGTTCAGAGCCAAACGCTTCTT-A    237
                     .|||||||||||.||.|||||||||||||||.|.||.||.||.||.|| |
RBAM_019990__    189 GTTCTTTTTTCACCCGAATACAGCGATGTTCCGCGCTAAGCGGTTTTTGA    238

BSNT_03256       238 CAGGGAGAGCAAGAGCCTATGCTTCGGGCTGCCGGCTTATCTGAAGGGGA    287
                     .||||..||| .|||||..||.|....||.|||||.|||...||||||||
RBAM_019990__    239 GAGGGGAAGC-CGAGCCGTTGTTAAAAGCAGCCGGATTACGCGAAGGGGA    287

BSNT_03256       288 TGCGTTTTTAGATTGCACACTCGGGCTGGGGTCAGATGCCATTATCGCAA    337
                     |.|.|||||||||||.||.|||||.||||..||.|||||.|||.|.||||
RBAM_019990__    288 TTCCTTTTTAGATTGTACGCTCGGCCTGGCATCCGATGCGATTTTGGCAA    337

BSNT_03256       338 GTATGGCAGTAGGCGAAA-CGG----GT--TCTGTTGTTGGGATTGAAAA    380
                     |..|||||||.||..||| |||    ||  ||       ||..|.||.||
RBAM_019990__    338 GCCTGGCAGTCGGAAAAAGCGGACAAGTCATC-------GGCCTGGAGAA    380

BSNT_03256       381 AAACCATCTTGTGTC--TGTTTTAGTGAGGATG-----GGGCTGCATTCA    423
                     ||||.|.|||||.||  ||.||       |.||     ||.||.||..|.
RBAM_019990__    381 AAACAAGCTTGTCTCATTGCTT-------GTTGAAACAGGACTTCAAACG    423

BSNT_03256       424 TGGGAAACGGGTATAGAAGAGCTTCAAGCTGCGATGAGAAGAATCCAGGT    473
                     ||||||||.||.||.||..||||.|||.|.||.||||.|.|.||.|||||
RBAM_019990__    424 TGGGAAACCGGAATGGAGCAGCTCCAAACCGCCATGAAACGCATTCAGGT    473

BSNT_03256       474 GAAGAATGGTGATTGCTTAGAATACATCAAGCAGCTTCCTGA--CAACTC    521
                     .||..|||.|||.|||...||.||..|...|.||||||||||  ||  ||
RBAM_019990__    474 CAAACATGCTGACTGCGCCGATTATTTGCTGGAGCTTCCTGATTCA--TC    521

BSNT_03256       522 TGTTGATGTGGTTTATTTCGATCCAATGTTTCATGAACCTGTAGAGACCT    571
                     .||.|||||..|||||||.||.||.||||||||.||||||||.||.|..|
RBAM_019990__    522 GGTAGATGTCATTTATTTTGACCCGATGTTTCACGAACCTGTTGAAATGT    571

BSNT_03256       572 CTGACGGCATCGCGCCTTTACGTGATTTGGCAGAGGATTCCGTTTTGCAC    621
                     |.||||||||.||.||..|.||.|...|||||||.||   .|.|||..||
RBAM_019990__    572 CAGACGGCATTGCACCGCTCCGCGCGCTGGCAGAAGA---GGGTTTTAAC    618

BSNT_03256       622 GAAGGATGTATCAATGAAGCGGTACGAGTCGCCAGAAAAAGCGTTGTGCT    671
                     ||||..||.||||...||||.||.||.|..||.|.||||.||||.|||||
RBAM_019990__    619 GAAGAGTGCATCACGCAAGCCGTCCGCGCGGCGAAAAAATGCGTAGTGCT    668

BSNT_03256       672 AAAAGACCACTGGAAAAGCCCGCGATTTGAACAGTTTGGTTTTAACGTCA    721
                     .||||||||.||||||||||||||.|||||||..|..||.||.||.||..
RBAM_019990__    669 TAAAGACCATTGGAAAAGCCCGCGGTTTGAACGATACGGCTTCAAGGTGC    718

BSNT_03256       722 TGAAAAGAAAAACAGCACTGTTCCATTATGGCGTCATTCAAACAAGCCCG    771
                     ||||||||||.||.||.||.|||||.|..||.|||||.||....|||.|.
RBAM_019990__    719 TGAAAAGAAAGACGGCGCTTTTCCACTTCGGTGTCATCCATGTGAGCTCA    768

BSNT_03256       772 TGA    774
                     |||
RBAM_019990__    769 TGA    771


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